Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g02460 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:794499-795413 | ||||||||
| Gene Symbol | RLCK9, OsRLCK9 | ||||||||||
| DNA seq | ATGGCCACAGCACTCTATCTTTCACTGAAGTCAAGGTATGATGAAGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATATGGCACATCGAAGCCCACAAGGTACAGTTTCTCTGATGTCAAGAAGATAACGAGATGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTAAACATTGTCCGCCTTCTGGGATTCTGCTCTGAAGGAACACGACACATTCTTATCTATGAATTCATGCCTAATGAATCATTGGAGAAATACATATTCTTTCATGACCCTAATACTTCTCAAGAACTCCTGGCACCAAAAAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGAATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCTGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCTAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGCTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGACGTATACAGTTTTGGCATGCTTGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCAAGTATTGAGGACCAGAATGAGGTCTACTTTCTGGAGTGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTGGGGAAATGACAGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTCGTGGCACTTTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACAGGAAGGTTGCAGAATATACAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA
More
|
||||||||||
| CDS seq | ATGGCCACAGCACTCTATCTTTCACTGAAGTCAAGGTATGATGAAGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATATGGCACATCGAAGCCCACAAGGTACAGTTTCTCTGATGTCAAGAAGATAACGAGATGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTAAACATTGTCCGCCTTCTGGGATTCTGCTCTGAAGGAACACGACACATTCTTATCTATGAATTCATGCCTAATGAATCATTGGAGAAATACATATTCTTTCATGACCCTAATACTTCTCAAGAACTCCTGGCACCAAAAAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGAATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCTGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCTAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGCTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGACGTATACAGTTTTGGCATGCTTGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCAAGTATTGAGGACCAGAATGAGGTCTACTTTCTGGAGTGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTGGGGAAATGACAGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTCGTGGCACTTTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACAGGAAGGTTGCAGAATATACAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA
More
|
||||||||||
| Protein seq | MATALYLSLKSRYDEEVHLKVEMFLRTYGTSKPTRYSFSDVKKITRCFKEQLGQGGFGSVNIVRLLGFCSEGTRHILIYEFMPNESLEKYIFFHDPNTSQELLAPKKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNLKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSIEDQNEVYFLEWIYEKVITGQDFVLSGEMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIQVPPKPFVSYESHAVP |
||||||||||
| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g02460 | LOC_Os01g02460.1 | Chr01 | 794499 | 795413 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCACAGCACTCTATCTTTCACTGAAGTCAAGGTATGATGAAGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATATGGCACATCGAAGCCCACAAGGTACAGTTTCTCTGATGTCAAGAAGATAACGAGATGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTAAACATTGTCCGCCTTCTGGGATTCTGCTCTGAAGGAACACGACACATTCTTATCTATGAATTCATGCCTAATGAATCATTGGAGAAATACATATTCTTTCATGACCCTAATACTTCTCAAGAACTCCTGGCACCAAAAAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGAATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCTGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCTAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGCTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGACGTATACAGTTTTGGCATGCTTGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCAAGTATTGAGGACCAGAATGAGGTCTACTTTCTGGAGTGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTGGGGAAATGACAGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTCGTGGCACTTTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACAGGAAGGTTGCAGAATATACAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA
More
|
|||||||
| Protein seq | MATALYLSLKSRYDEEVHLKVEMFLRTYGTSKPTRYSFSDVKKITRCFKEQLGQGGFGSVNIVRLLGFCSEGTRHILIYEFMPNESLEKYIFFHDPNTSQELLAPKKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNLKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSIEDQNEVYFLEWIYEKVITGQDFVLSGEMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIQVPPKPFVSYESHAVP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0114900 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02690 | RBH | 0.224978 | 0.0 | 0.079754 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0114900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001220 | SBH | 0.136429 | 1.008476 | 0.429167 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001200 | SBH | 0.280931 | 0.882898 | 0.439823 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001140 | SBH | 0.0 | 0.000000 | 1.800174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001180 | SBH | 0.675559 | 0.081542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001160 | RBH | 0.532316 | 5.781797 | 1.157465 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013800 | RBH | 1.126013 | 2.7424635 | 3.4048895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001070 | SBH | 0.206319 | 0.096424 | 0.315710 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0014500 | SBH | 0.0265545 | 0.0553125 | 0.153599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001170 | SBH | 0.907174 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001350 | SBH | 0.470036 | 0.861946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001180 | RBH | 0.0 | 3.269714 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001110 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001180 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001350 | SBH | 0.584981 | 0.000000 | 0.584613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000980 | RBH | 0.068539 | 1.712051 | 0.473257 |
