Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_Ung0000490 | OGI:99002300 | 1/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | ChrUN-Ctg70:26071-29112 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | ttatttggtgttcttcactaattggtacctagctcgggcacgcttcaacgcgaagttcgcctctaccttttgtttttgacccgacgcttcaagccattttgcttgcgcttcttgataactttcttctgcttggtctggatcaatagactctggcgattccgcctcatttaccagcacagttacttggttctgcttgacgagtgcgaatcctcccatcaaagccacagaagtccattcggttttagtgcggcttagcataacccccacatctagtgccgtcattaggggggcatggtttgtaagcacacccatttggccagtgttagtgggtaatatgatctcttccacctcttgattgaggaaaattcgatccggcgtcataatgcaaacttgtaatgtcatagatcttaagttctctgtgttttcaatgggcaacacgcctgatcaaaagttgtctcttgccctctttgcagcccgtccgctgtcaaccggctctcaacaagacaaagagaccagtacttccacgtcttcaatatcccattgggcgggcagataccactctgaaaggtcaaaccatcggacgtagcccacaaacagaatagcagtagttggggggggggcaaagccctcccctcgatggccttgcatcccttgcatccggtgcatcccgaagggatgcaagggatgcaccggatgcacgggtggcccacgaaccccacgtcttgcaatgaattctgcgcctccttccgtttcgtgctctgggggctctatatccgtccctcagtggttcaaagcttattagttgggggggtcagagccctcccacgccctacagccacttcgattgcctagccatcgacgcccaacatttgtcattcacacctgatggctaacgataacaattaataaaaataggataaataagtttaaagtcagctaactagtgagaaaatcacggggaacatgaacatttcgaggatcaaaaccactaacccgttaggggtaaggctttagggaggtgtcaaaagggcgtgtttactcctgacgccgcttgccattacatgcccgataggccccaaacctgtacgatacatgcaccgtccgggctttactttcctagccgatttctcgctacggggaaaacctgtccgacggaacgccttggggctcgaaggctacccgtgcatccggtgcatcccttcgggatgcaagggatgcaagagggggttcgttgggatggccaagatcgatcttacaggtgctcccggggttgcattgctttgcaatgcacgcccctgggggcagggggatgggggcagttgctttgcatgggggcccctacccccctcgatggccgggggttcgatggccacccgtccgacggaacgccttgggggggctgggcccccccgggaacacctgtgaagcctggccaaggtcggggttgtgggggccccggcccccatcccaacgaaccccctcgttggccgggggtggccttcgaaccccaaggcccccacacccacacccacacccacagcccccccaagtcgtttcggcgaacgggtaaccatcgagcccccgctaggtctacttgctttgaagtgaagcagctttagaaacagcttcattaatgtcacctacaagatagaaagcttgttctggaagatcgtcaagctcacctgataaaatgaagttgaatccttggatcgtttcggctagactcacgtactttcctggagaaccagtaaacacctccgctacaaagaacggctgagacaagaaacgctctatcttgcgagctcgtgctacaatcaaacggtcttcctcagacaattcgtctaaccctaaaattgcaatgatgtcttgcaactctttgtaacgttgcagagtctctttaacgttttgtgcacattgataatgctcctcccctacaatccaaggttgcagcatggtagatgttgaatcgagagggtctaccgcaggataaatccccttcgacgctaaaccacgtgaaagaaccgttgtcgcgtctaaatgagcaaatgtagtagctggtgccgggtcggttaagtcatccgcaggcacatacacagcttgaatagacgtaattgagccgtcttttgtcgacgtaattctttcttgtaatccacccatttcagtcgcaagggtaggttggtagcctactgcagatggcatacgtcctaaaagagcagaaacctcagatccagcttgaacaaaacggaaaatgttgtcaataaagagcaatacgtcttgcttgttaacatcccggaagtactctgccatggtaagggcagtcaaaccaacacgcatgcgtgcccctggcggctcgttcatttgcccatatactagagcaacttttgatgctgaaaggttgtcttcatcaataacctttgactctttcatctcggcatacaggtcgttcccttcccgggttcgctcgcctacgccaccaaacacagaaacgcccccgtgagcctttgcaatgttgttgatcaactccatgatcaacacagttttgcctactcctgctccaccgaacaaaccaatcttgccaccccgacgataaggtgcaagaaggtctaccaccttgatgcccgtttcaaagattgaaagcttggtgtccaggtcgacaaaggccggcgcggatctatggatcggtaggcctttcttgctgtctacagggccaaggctgtcaaccggttcgccaagtacgttaaagattcggccgagtgtgccttgccccacaggaacggtaagtggcttacctgtatcaactacatccatgccacgcatcaatccatcagttgcgttcattgagattgctcgaacgcaatggtcgcctaaaagctgctgaacctcgcatgtaagagagatttcatcacccgcttcgttcttgccttggatcacaagcgcgttgtagatgtttggcatcttccctgctgagaaagccacatcaagaactgggccgataatttgagtaattcggcctacgtttttggtttttacagaggtgttcat
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| CDS seq | atgaacacctctgtaaaaaccaaaaacgtaggccgaattactcaaattatcggcccagttcttgatgtggctttctcagcagggaagatgccaaacatctacaacgcgcttgtgatccaaggcaagaacgaagcgggtgatgaaatctctcttacatgcgaggttcagcagcttttaggcgaccattgcgttcgagcaatctcaatgaacgcaactgatggattgatgcgtggcatggatgtagttgatacaggtaagccacttaccgttcctgtggggcaaggcacactcggccgaatctttaacgtacttggcgaaccggttgacagccttggccctgtagacagcaagaaaggcctaccgatccatagatccgcgccggcctttgtcgacctggacaccaagctttcaatctttgaaacgggcatcaaggtggtagaccttcttgcaccttatcgtcggggtggcaagattggtttgttcggtggagcaggagtaggcaaaactgtgttgatcatggagttgatcaacaacattgcaaaggctcacgggggcgtttctgtgtttggtggcgtaggcgagcgaacccgggaagggaacgacctgtatgccgagatgaaagagtcaaaggttattgatgaagacaacctttcagcatcaaaagttgctctagtatatgggcaaatgaacgagccgccaggggcacgcatgcgtgttggtttgactgcccttaccatggcagagtacttccgggatgttaacaagcaagacgtattgctctttattgacaacattttccgttttgttcaagctggatctgaggtttctgctcttttaggacgtatgccatctgcagtaggctaccaacctacccttgcgactgaaatgggtggattacaagaaagaattacgtcgacaaaagacggctcaattacgtctattcaagctgtgtatgtgcctgcggatgacttaaccgacccggcaccagctactacatttgctcatttagacgcgacaacggttctttcacgtggtttagcgtcgaaggggatttatcctgcggtagaccctctcgattcaacatctaccatgctgcaaccttggattgtaggggaggagcattatcaatgtgcacaaaacgttaaagagactctgcaacgttacaaagagttgcaagacatcattgcaattttagggttagacgaattgtctgaggaagaccgtttgattgtagcacgagctcgcaagatagagcgtttcttgtctcagccgttctttgtagcggaggtgtttactggttctccaggaaagtacgtgagtctagccgaaacgatccaaggattcaacttcattttatcaggtgagcttgacgatcttccagaacaagctttctatcttgtaggtgacattaatgaagctgtttctaaagctgcttcacttcaaagcaaatctatgacattacaagtttgcattatgacgccggatcgaattttcctcaatcaagaggtggaagagatcatattacccactaacactggccaaatgggtgtgcttacaaaccatgcccccctaatgacggcactagatgtgggggttatgctaagccgcactaaaaccgaatggacttctgtggctttgatgggaggattcgcactcgtcaagcagaaccaagtaactgtgctggtaaatgaggcggaatcgccagagtctattgatccagaccaagcagaagaaagttatcaagaagcgcaagcaaaatggcttgaagcgtcgggtcaaaaacaaaaggtagaggcgaacttcgcgttgaagcgtgcccgagctaggtaccaattagtgaagaacaccaaataa
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| Protein seq | MNTSVKTKNVGRITQIIGPVLDVAFSAGKMPNIYNALVIQGKNEAGDEISLTCEVQQLLGDHCVRAISMNATDGLMRGMDVVDTGKPLTVPVGQGTLGRIFNVLGEPVDSLGPVDSKKGLPIHRSAPAFVDLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEDNLSASKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYQCAQNVKETLQRYKELQDIIAILGLDELSEEDRLIVARARKIERFLSQPFFVAEVFTGSPGKYVSLAETIQGFNFILSGELDDLPEQAFYLVGDINEAVSKAASLQSKSMTLQVCIMTPDRIFLNQEVEEIILPTNTGQMGVLTNHAPLMTALDVGVMLSRTKTEWTSVALMGGFALVKQNQVTVLVNEAESPESIDPDQAEESYQEAQAKWLEASGQKQKVEANFALKRARARYQLVKNTK |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P32978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_Ung0000490 | OsCMeo_Ung0000490.01 | ChrUN-Ctg70 | 26071 | 29112 | - | NAM | ||
| CDS seq | atgaacacctctgtaaaaaccaaaaacgtaggccgaattactcaaattatcggcccagttcttgatgtggctttctcagcagggaagatgccaaacatctacaacgcgcttgtgatccaaggcaagaacgaagcgggtgatgaaatctctcttacatgcgaggttcagcagcttttaggcgaccattgcgttcgagcaatctcaatgaacgcaactgatggattgatgcgtggcatggatgtagttgatacaggtaagccacttaccgttcctgtggggcaaggcacactcggccgaatctttaacgtacttggcgaaccggttgacagccttggccctgtagacagcaagaaaggcctaccgatccatagatccgcgccggcctttgtcgacctggacaccaagctttcaatctttgaaacgggcatcaaggtggtagaccttcttgcaccttatcgtcggggtggcaagattggtttgttcggtggagcaggagtaggcaaaactgtgttgatcatggagttgatcaacaacattgcaaaggctcacgggggcgtttctgtgtttggtggcgtaggcgagcgaacccgggaagggaacgacctgtatgccgagatgaaagagtcaaaggttattgatgaagacaacctttcagcatcaaaagttgctctagtatatgggcaaatgaacgagccgccaggggcacgcatgcgtgttggtttgactgcccttaccatggcagagtacttccgggatgttaacaagcaagacgtattgctctttattgacaacattttccgttttgttcaagctggatctgaggtttctgctcttttaggacgtatgccatctgcagtaggctaccaacctacccttgcgactgaaatgggtggattacaagaaagaattacgtcgacaaaagacggctcaattacgtctattcaagctgtgtatgtgcctgcggatgacttaaccgacccggcaccagctactacatttgctcatttagacgcgacaacggttctttcacgtggtttagcgtcgaaggggatttatcctgcggtagaccctctcgattcaacatctaccatgctgcaaccttggattgtaggggaggagcattatcaatgtgcacaaaacgttaaagagactctgcaacgttacaaagagttgcaagacatcattgcaattttagggttagacgaattgtctgaggaagaccgtttgattgtagcacgagctcgcaagatagagcgtttcttgtctcagccgttctttgtagcggaggtgtttactggttctccaggaaagtacgtgagtctagccgaaacgatccaaggattcaacttcattttatcaggtgagcttgacgatcttccagaacaagctttctatcttgtaggtgacattaatgaagctgtttctaaagctgcttcacttcaaagcaaatctatgacattacaagtttgcattatgacgccggatcgaattttcctcaatcaagaggtggaagagatcatattacccactaacactggccaaatgggtgtgcttacaaaccatgcccccctaatgacggcactagatgtgggggttatgctaagccgcactaaaaccgaatggacttctgtggctttgatgggaggattcgcactcgtcaagcagaaccaagtaactgtgctggtaaatgaggcggaatcgccagagtctattgatccagaccaagcagaagaaagttatcaagaagcgcaagcaaaatggcttgaagcgtcgggtcaaaaacaaaaggtagaggcgaacttcgcgttgaagcgtgcccgagctaggtaccaattagtgaagaacaccaaataa
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| Protein seq | MNTSVKTKNVGRITQIIGPVLDVAFSAGKMPNIYNALVIQGKNEAGDEISLTCEVQQLLGDHCVRAISMNATDGLMRGMDVVDTGKPLTVPVGQGTLGRIFNVLGEPVDSLGPVDSKKGLPIHRSAPAFVDLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYAEMKESKVIDEDNLSASKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYQCAQNVKETLQRYKELQDIIAILGLDELSEEDRLIVARARKIERFLSQPFFVAEVFTGSPGKYVSLAETIQGFNFILSGELDDLPEQAFYLVGDINEAVSKAASLQSKSMTLQVCIMTPDRIFLNQEVEEIILPTNTGQMGVLTNHAPLMTALDVGVMLSRTKTEWTSVALMGGFALVKQNQVTVLVNEAESPESIDPDQAEESYQEAQAKWLEASGQKQKVEANFALKRARARYQLVKNTK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0207500 | SBH | 57.407822 | 53.964123 | 25.773243 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21266 | SBH | 145.910477 | 139.534317 | 22.558170 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036470 | SBH | 123.080765 | 37.183609 | 200.062256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017940 | SBH | 65.617912 | 8.382897 | 67.886055 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_Ung0000710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017800 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018040 | SBH | 2594.177490 | 135.457016 | 1458.653687 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017530 | SBH | 242.378647 | 6.233304 | 101.943016 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001500 | SBH | 103.812248 | 1.650233 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017770 | SBH | 260.262146 | 75.550835 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017900 | SBH | 3112.340576 | 184.527969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | SBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017970 | SBH | 228.366791 | 25.746792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006520 | SBH | 94.360809 | 25.380814 | 174.393448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001500 | SBH | 45.919033 | 19.697384 | 146.525360 |
