Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0207500 | OGI:05056570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:5612066-5613106 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | TCATGCTCTTGCTACAGTTAAACGATCCTCCTCCGATAATTCATCCAACCCAAGAATTGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTGCTTAACTCTTTGTGCAGTTTCATAATGTTCGTTGCCAACGATCCGAGGTTGTAACATAGTTGAGGTTGAATCTAAAGGATCTACTGCAGGATAAATCCCTTTGGAAGCTAATCCTCTGGAAAGTACGGTAGTAGCATCCAAATGTGCAAATGTTGTAGCAGGAGCAGGGTCGGTCAAATCGTCCGCATGTACATAAACCGCTTGGATCGAAGTTATAGATCCCTTTTTAGTAGAAGTAATTCTTTCTTGCAAAGAACCCATTTCTGTACTAAGAGTAGGCTGATAACCCACTGCAGAGGGCATTCTCCCTAATAAGGAAGATACCTCCGATCCTGCTTGAACAAAACGAAAGATATTATCGATGAATAGAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTCAAACCAACTCTCATACGAGCTCCTGGCGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAAGATTTTTTTCATTAATTACTCCAGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCTACTCCGCCAAATACGGATACGCCCCCGTGAGCTTTAGCAATATTGTTGATTAATTCCATGATAAGTACTGTTTTACCTACTCCAGCTCCCCCAAATAGTCCGATTTTTCCTCCACGCCGATAAGGAGCTAAAAGATCGACCACCTTAATACCAGTTTGAAAGATGGATAATTTCGTATCTAACTCGATAAAGGCGGGCGCAGATATATGAATAGGGAATGTTGCACTAGTATCTACAGGACCCAAATTGTCAACAGGCTCCCCAAGAACGTTGAAAATTCGTCCAAGAGTAGCTCCACCGACAGGAACACTGAGAGGAGCTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCCATCTGTAGCACTCAT
More
|
||||||||||
| CDS seq | ATGAGTGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATATATCTGCGCCCGCCTTTATCGAGTTAGATACGAAATTATCCATCTTTCAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCGGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTTATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTTCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAGCCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACATGCGGACGATTTGACCGACCCTGCTCCTGCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGCACAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCATGA
More
|
||||||||||
| Protein seq | MSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHISAPAFIELDTKLSIFQTGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSSLLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVHADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARA |
||||||||||
| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0207500 | OsNip_12t0207500-00 | Chr12 | 5612066 | 5613106 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGTGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATATATCTGCGCCCGCCTTTATCGAGTTAGATACGAAATTATCCATCTTTCAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCGGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTTATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTTCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAGCCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACATGCGGACGATTTGACCGACCCTGCTCCTGCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGCACAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCATGA
More
|
|||||||
| Protein seq | MSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHISAPAFIELDTKLSIFQTGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSSLLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVHADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 57.407822 | 53.964123 | 25.773243 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0355800 | RBH | 235.792694 | 227.115631 | 94.854477 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10570 | RBH | 77.741356 | 71.903542 | 12.841491 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006680 | RBH | 16.614193 | 5.437267 | 20.195169 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006760 | RBH | 72.391319 | 5.758027 | 84.931236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006760 | RBH | 60.821098 | 5.132908 | 57.434643 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006660 | RBH | 5.490091 | 0.245439 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018040 | SBH | 2594.177490 | 135.457016 | 1458.653687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0321300 | RBH | 4556.696533 | 300.042511 | 311.625824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017530 | SBH | 242.378647 | 6.233304 | 101.943016 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0332700 | RBH | 3890.892944 | 145.379814 | 236.1027605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017860 | SBH | 150.555099 | 0.800298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017770 | SBH | 260.262146 | 75.550835 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017900 | SBH | 3112.340576 | 184.527969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | RBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017970 | SBH | 228.366791 | 25.746792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006520 | RBH | 94.360809 | 25.380814 | 174.393448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017740 | SBH | 446.197113 | 153.654099 | 868.082825 |
