Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0018440 | OGI:12060770 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:23947856-23954344 | ||||||||
| Gene Symbol | MT1G, OsMT1g, MT1g, MT1Le, OsMT1Le | ||||||||||
| DNA seq | atgtaccgtgacatgccagagaacaacaccaccagcaacccaggagcaatggtccttggtgtttcacctgacaaggggtataaatttcagattacaacaaaatatactacaaatatcaggtgcattcatgtgtaatttgaaactgatttgtgtttttcgcaggcgcgtcgaagtgtctgagaaggctgaagaatccggtgagaccggccatggctgcggctgtggctctggctgcaagtgcaacccctgcaactgctgaagaggactccttgtataacatctactagtagtaaataaggggccatttgatgcaatggctcaagtttgtgtcacgtgcttggttactgtactagcgtggtttgtgttgttagatggatctccctccccttgagcccaacggctcaagggggccttgacccgcgccctgatcgggggcgtccagccgtcacactgcgccatataaaagggggtggaggccagggcggcacacggtatgaggttcgctgccgccgccaactccaccccacaaaccctaatccgatcgagagggggcgcagccagtgacgggaaacgccaccgccgcgccacgcctcatcgccgggacatctacgaccgtcactgctgcagccgtcatcgccgtcgacctcatcggcgccgcatccacaacaaccgagcgccaacgacgacgatggccggcacttcttcatcctccaacacctcaaccggtcggtctatctaaaccctctcccgttttcaatctttatagttcaaacatcaaaccaatagatccacccgactagatctaacctaggtgattctagagcaaagcctaacaatggtatcagagcaccctagcgcttagatcggttcggggaaagaaacccacagaggaaaagaaagaaagaaatgcaaatgatccaacggatcgaaaagaaaaccctaaccctaattcttacctcgtcgccggccgtcgtcgacgccggcaacggaggggggaggggcaaagaggcactgtcgaggagccactcgacggccgtgcgtgcacccgcgggtgcacgcgtgcgccggcgagagggcccgcggcggcgccgccatctccgtcgtcgccgctctctctctcacacttcacgcgggtggagggcgagagacggtggggggagaagagaagagaaaaggcgccggccatggggggtgggcgcgaaggtcgccggcgacggcgacaccgctccgtgcggtcgcgcgagaaagaagagaagctagggtttggcgtgacggctgggggggtcggcggttttgtttgcccgatctccccgcctggccgtccgatcgaaccctagcggatcggacggctggcgacggctgggccaaaaacggcccaagaggggcgcgcgcggcggtttcccggcccaggcccacgttgcggcctgggggaaaaaggggagcgcccgcgcgcgccaaaagggccgtgggccgccggcaaaagttcaaattaggtccctcgggggccgaaaatgatgaaaagagggacagtagcaaattttccttttattttgttaattttcatgcaaatttcaatagattttgaatagatttttgcatgttttacctctgtttaaattcgaaccaacgggagaacttttacagagagtaaattacagagttttgctactgttcatatgatttttatatagattttccgctgcaaatagatgaaattgatgtttctaaaattaaatttcaaaccaacgggagaatttaattttaggaacattaattatgtgctatgatgttgtaattttctgaccaacgttgataattgcaatgttacagttatggttatatgtattatgtctaattctgcccaacggtgatgtaggcttaatgcatattattttaatgttaatttttgttctcaccgtacgtgattatttcaggtggctactccttgatgggttgcattaaagatattcctaccctgaaaggagataactacgcagaatggaaaagaaaactcgaccttgcttttatcttgggagaggtggactgggtgttgactaccccatgtcctatagaacctgctgaacttatcagaggtgaaaatgagtcagatgctgactggcaaaagagacagagggacaatgctcctctcgtcatgtcgtatgacattgaacaaaagaaatggtctttagccaacaagaaatgtttggctgtggtaaagaacacgattgagccaaccatattgggctcaatcccagagtgtgacgcagtctcagagtatcttgaaagaataaagagtcagtttactggctcttcaaagacttatgctacacaactgatcaagcagcttgtgatagaaaggtaccatgtaggtggtgttagagaccacatacttaggatgaccaacatggcttccaagttgaagccaatggatttgggcataacagatgactttatggtccatctggttatggcctcattgccaaagcagtttgacaattttattgtcaactacaatataagtccagagaaatggaaatttgaaaagctcattgctaattgtgtgcaagaggaggagagaatcaaagagtcaaatggtggttcaataaactatgttaaagataacaagaaaaagaaccacaagtctcccacctcaaaagctaaacagtctcagcatctgcttcagcaacaatagttcgctgttgagaaagatcagtgtctccacagcaagaagacaggacattacaagaaagactgtcctgacttcttgaaaatgatcatggcaaggaaaggtgagaacattattacatttgtaaatgaatctcattatgttggttactctagatccacatggtggattgattctggagcaactattcatgcttgtaattgtttaaaggcattccgttcgacaaggactacgcaaagaagagaaagctccattagagttgccaatggagttgaagaaaaagttgaagctgttggagatcttcctctagagattgcgaatggcttcacacttttacttcgagatgtcttttatgttccttctttgcaaagaaacttaataagtgtatcaaagttggattttgatggatatgattgccgctttggaagtggcaaatgtgaactatggtataataatgcatgtgttggtcttgctgtgttgcgagacaagctttatttgttatctctttctgagaatgtgaatgttgtgtcctcgttgacaaaagaaaacaagaaaagaaagagaactcccgatgtctcatcgaaattatggcactgtcgtttgggccatattttgagggggtgaattgagagactagttaagaatgaaattcttcctctattggagttctcagacttagaacaatgcatagaatgcattaaaggaaaatttgtaaagagcatcaaaaatggtgcaaaacgaagcgttcgaattttagagatcattcatacaaatatttgtggtccatttcctgtgaaaagtgtggatggctatgactcgttcataacattcacagatgattactcccgctatggttatatttatacaattaaagagcgatcagaagtattggataaatttaagatattcaaagctgaagatgaaaatcagcatgatataaagattaaagtagtaagatctgaccgtggggggagtactatggtcgacatacgccttatgggcaagtccctggaccttttgcaaggttcttgctagagaatggaatagtagcccagtattcaacaccgggcgaacctcaacagaatggggtagctgaaaggcgtaaccgtacccttatggatatggtgcgcagcatgatgagctactccacactaccactgggtttatggatggaggcgttaaaaaccgctattcatattctcaacagagttccaagcaaatcggtgaccaaaacaccgtatgagctatggataggaagagtaccctcgctagctcacctccgtgtgtgggggagtcctgtacaaagtatttaacccaaatattgggaagttggatccaaaacagtcagctgccattttattggctatcctgaaagatcaaagggctatcgtttctactgtccaaatagttatacaaagtttgtagaaacgagacatgccgtcttcttggaaggcgaaatgattagggggagctcggtagttcgagaaattgatcttgaggagaggcgggtgtctgtacccgctccgtcgactcaggaacctttcttctctctacctgctgatggtgtgcctgcaatgcctgtcattgtggtaccagcacctgttgttacctctcctgtggcaacaataaatgaaaatgaggaacctgttatacaagattcaacagaaatggttgccacaccagagaaggagctgcaacagcctcaaacagataatgtgccagtacaggagactcaacaagagcctcaggtataggatgtgccaaatgtggaggcccctagaaggtctgaaagagtcagaagatcggctatccgtgatgactataaagtttataacatagaagagtcacatatggaggatgatcccacctcatatgaagaggccatgagaagcgctcgcttgtctgaatggttggaagccatgaaagatgaaatgaaatcaatgaaactaaacgatgtttgggatttagaagaaattcctaaaggagcgaaaacagtaggctgtaagtgggtctacaaaaccaaatatgactccagagggaatatagaaaagtttaaagcgtgacttgtggcaaaaggcttcacgcaacgagaggggattaattacaatgaaacattttctctagtctcttgtaaagattccttcaggattataatggcactagtggcacattatgatttggaattacatcagatggatgtaaaaacgacatttctaaatggagatttggaggaaaaagtatacatggcgcaaccgaaaggttttgtcatgaaaggaaacgaaaatatgggatgccgtctaaaagatccatttatggattaaagcaagcttcgagacagtggtacttgaagtttgatggaacaataaaaaaatttgggtttcaagagaatgtcgaggacaactgtatttattcaaagtttaagaatgggagatttattttcctaattctgtatgtggatgacattctactggctagtagtgatgtcagtctactgcaggaaacaaagaaattcttgtcctcaaactttgacatgaaagatctcggtgaagcttcatatgttttgggcatagagattcaccgagataaaacaaagtatgcattgggactttctcaaaagacatatagaaaaggtgttgaagaaattcaacatgaacagatgcagtgctacacctgctcctatagtcaaaggggaaaagtatggggcatcgcaatgtcccagaaatcagtatgagctcaatgaaatgaaaacaaagccatatgcgtcagctgtaggaagcctacagtacgcgtaagtgtgcacacgacctgacttggcatttgttatcaggttacttggcagatttcagagtaatccaggcccagagcactggaaattggtaaagaaagtcttgcgttatttgcaaggaacaaaaggcctcatgctgtcttacagaagatcagaatcgctctagatagtggggtattcggattcggcggttcaagatgtcgtgcggtggaagttgcaactgcggttcaagctgcggctgcgggtacttttttcatatgctgatttatcaaaataaactgaaataagctttcagagatagcagttacttcgttttgttgatttttttttcgctcaaaaagtttggttgattttaacgtactttccatgataaaaaaaacatgctatttccattgcttcaaagttcaaagtttgttcagataaagctacatgtaagatgagaagagattatcactaattcattatcagttactttacattcattttatgtcctgctttttttcttggttcagaaagatgtaccctgatctggcagagaagaacaccaccatcaccacctcagataccatgatcctcggtgttgcacctgaaaaggggtatagccatctagcttatatttcatcttaaagaaactgaactgaagaatctcattagtaccagctgagcttcagatttgaatcagaccacaacattctttctatgcctgaatttgtctgcttctttcttacgcaggcgcggcgaagcggtgttcgaggctgctgccggctccggtgaggccgaccatggctgcagctgcggctccagctgcaagtgcaacccctgcaactgctaagatcaagggattagtgaccgtagcatgcaccagcatgcctatctgtgatgaacaaataaataaaataggccatccagtgtgatgggttcaatcactgtatgtttggctgtgtgaattactggtcatcatcttgccagtgtgccctgtgtaatgttgttcagtgaaatataagatggcttgtttatg
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| CDS seq | atgtaccgtgacatgccagagaacaacaccaccagcaacccaggagcaatggtccttggtgtttcacctgacaaggggcgcgtcgaagtgtctgagaaggctgaagaatccggtgagaccggccatggctgcggctgtggctctggctgcaaaaagatgtaccctgatctggcagagaagaacaccaccatcaccacctcagataccatgatcctcggtgttgcacctgaaaaggggcgcggcgaagcggtgttcgaggctgctgccggctccggtgaggccgaccatggctgcagctgcggctccagctgcaagtgcaacccctgcaactgctaa |
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| Protein seq | MYRDMPENNTTSNPGAMVLGVSPDKGRVEVSEKAEESGETGHGCGCGSGCKKMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC |
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| Function | Metallothionein-like protein 4A [UniProtKB/Swiss-Prot:Q0IMG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0018440 | OsCMeo_12g0018440.01 | Chr12 | 23947856 | 23954344 | + | NAM | ||
| CDS seq | atgtaccgtgacatgccagagaacaacaccaccagcaacccaggagcaatggtccttggtgtttcacctgacaaggggcgcgtcgaagtgtctgagaaggctgaagaatccggtgagaccggccatggctgcggctgtggctctggctgcaaaaagatgtaccctgatctggcagagaagaacaccaccatcaccacctcagataccatgatcctcggtgttgcacctgaaaaggggcgcggcgaagcggtgttcgaggctgctgccggctccggtgaggccgaccatggctgcagctgcggctccagctgcaagtgcaacccctgcaactgctaa
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| Protein seq | MYRDMPENNTTSNPGAMVLGVSPDKGRVEVSEKAEESGETGHGCGCGSGCKKMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0571000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0571000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017930 | SBH | 0.537416 | 2624.176270 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018050 | SBH | 0.0 | 290.725464 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024400 | SBH | 29.331999 | 1428.262329 | 16.764290 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017740 | RBH | 0.0 | 1.025041 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017150 | SBH | 0.0 | 222.557663 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0311800 | RBH | 0.273651 | 28.0809785 | 0.0303345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017190 | SBH | 1.500923 | 58.490971 | 3.567671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342800 | RBH | 0.715797 | 16.606123 | 0.221199 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017230 | RBH | 0.0 | 3.527248 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017520 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017430 | RBH | 0.0 | 180.332397 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017630 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017620 | SBH | 0.0 | 0.933889 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017390 | SBH | 0.0 | 5.558923 | 0.554442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017230 | RBH | 0.0 | 113.367744 | 0.0 |
