Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0024400 | OGI:11083870 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:28565461-28566242 | ||||||||
| Gene Symbol | MTI1A, MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1 | ||||||||||
| DNA seq | gaagcgaggaggacccgaaggctatgcattgtgctcatcatctcaaaagctcttcttcttctccttagttgatttcatcttcagttgcttgagcttaattacagactgagagaagatgtcttgcagctgtggatctagctgcagctgcggctcaaactgctcctgcgggtaattttcactgtaactttgctgacttgttcttgatttatagggcaatcttttcattattaatattctctaaatatgcagagtaatcgttgttgcagagttaattcttgtggtaactgattgatgttgattttgttgcagaaagaagtaccctgacctggaagagaagagcagcagcaccaaggccaccgtcgtgctgggtgtggcgccggagaagaaggcgcagcagtttgaggcggccgcagagtccggcgagaccgcccatggctgcagctgcggttccagctgcaggtgcaacccttgcaactgttaagatgcctgcctgcatctaccatctatgtgaattgtgatgcagaaaaataaagaagcttggccatttgggttggtgcttgaccaatatatatggtgtgtgtgtgtgtgtgatgggttaatcgatgtgctatgttattggtttcactattcacgtactatgcttgtaatggtgtatccacagatgaagtgatgaatatattaaactggtttggctattatttcctatgtatatgtattttgtaccttcaatagtggctcattacgaaattagtccaataattcagtttaatatttacccggtt
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| CDS seq | atgtcttgcagctgtggatctagctgcagctgcggctcaaactgctcctgcggaaagaagtaccctgacctggaagagaagagcagcagcaccaaggccaccgtcgtgctgggtgtggcgccggagaagaaggcgcagcagtttgaggcggccgcagagtccggcgagaccgcccatggctgcagctgcggttccagctgcaggtgcaacccttgcaactgttaa |
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| Protein seq | MSCSCGSSCSCGSNCSCGKKYPDLEEKSSSTKATVVLGVAPEKKAQQFEAAAESGETAHGCSCGSSCRCNPCNC |
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| Function | Metallothionein-like protein 1A [UniProtKB/Swiss-Prot:P0C5B3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0024400 | OsCMeo_11g0024400.01 | Chr11 | 28565461 | 28566242 | + | NAM | ||
| CDS seq | atgtcttgcagctgtggatctagctgcagctgcggctcaaactgctcctgcggaaagaagtaccctgacctggaagagaagagcagcagcaccaaggccaccgtcgtgctgggtgtggcgccggagaagaaggcgcagcagtttgaggcggccgcagagtccggcgagaccgcccatggctgcagctgcggttccagctgcaggtgcaacccttgcaactgttaa
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| Protein seq | MSCSCGSSCSCGSNCSCGKKYPDLEEKSSSTKATVVLGVAPEKKAQQFEAAAESGETAHGCSCGSSCRCNPCNC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0024400 | OsCMeo_11g0024400.02 | Chr11 | 28565488 | 28566157 | + | IsoSeq | ||
| CDS seq | atgcagaaaaataaagaagcttggccatttgggttggtgcttgaccaatatatatggtgtgtgtgtgtgtgtgatgggttaatcgatgtgctatgttattggtttcactattcacgtactatgcttgtaatggtgtatccacagatg |
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| Protein seq | MQKNKEAWPFGLVLDQYIWCVCVCDGLIDVLCYWFHYSRTMLVMVYPQM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 29.331999 | 1428.262329 | 16.764290 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0704500 | RBH | 72.883789 | 81.553520 | 35.898193 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47809 | RBH | 39.290852 | 43.719231 | 7.350700 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0704500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024910 | RBH | 4.922851 | 4007.884277 | 6.417356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024910 | RBH | 1.903057 | 54.961384 | 1.616638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018430 | RBH | 8.020730 | 469.894287 | 4.541850 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024490 | RBH | 8.797770 | 22.310312 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024750 | RBH | 64.870934 | 825.844299 | 32.796341 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0451900 | RBH | 147.5633775 | 4374.530029 | 131.675152 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025280 | RBH | 3.771081 | 137.259415 | 2.996199 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0447600 | RBH | 78.02092 | 228.775131 | 1.4643185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0025070 | RBH | 8.785956 | 21.728670 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025180 | RBH | 9.507493 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024530 | RBH | 52.918049 | 1139.302124 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024240 | RBH | 17.650301 | 0.0 | 7.843737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024690 | RBH | 5.050285 | 265.554840 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024650 | RBH | 9.030710 | 36.953709 | 19.944254 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024850 | RBH | 21.871101 | 2302.292725 | 34.692253 |
