Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g38290 | OGI:12060770 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:23512497-23513477 | ||||||||
| Gene Symbol | MT1G, OsMT1g, MT1g, MT1Le, OsMT1Le | ||||||||||
| DNA seq | GCAATTGCACTAAACTCACCTCAAGCTTTCTCAACACTTCATTGCACACAATTTCCTGAAGAGTTAAACAAGAGACCTAAAAAATCAAGATGTCGTGCGGTGGAAGTTGCAACTGCGGTTTAAGCTGCGGCTGCGGGTACTTTTTTCATATGCTGATTTATCAAAATAAACTGAAATAAGCTTTCAGAAATAGCAGTTACTTCGTTTTGTTGATTTTTTTTTCGCTCAAAAAGTTTGGTTGATTTTAACGTACTTTCCATGATAAAAAAAACATGCTATTTCCATTGCTTCAAAGTTCAAAGTTTGTTCAGATAAAGTTACATGTAAGATGAGAAGAGATTATCACTAATTCATTATCAGTTACTTTACATTCATTTTATGTCCTGCTTTTTTTCTTGGTTCAGAAAGATGTACCCTGATCTGGCAGAGAAGAACACCACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGTATAGCCATCTAGCTTATATTTCATCTTAAAGAAACTGAACTGAAGAATCTCATTAGTACCAGCTGAGCTTCAGATTTGAATCAGACCACAACATTCTTTCTATGCCTGAATTTGTCTGCTTCTTTCTTACGCAGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGCCGGCTCCGGTGAGGCCGACCATGGCTGCAGCTGCGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAAGATCAAGGGATTAGTGACCGTAGCATGCACCAGCATGCCTATCTGTGATGAACAAATAAATAAAATAGGCCATCCAGTGTGATGGGTTCAATCACTGTATGTTTGGCTGTGTGAATTACTGGTCATCATCTTGCCAGTGTGCCCTGTGTAATGTTGTTCAGTGAAATATAAGATGGCTTGTTTATGAATTTTCCTCTCTCATTATCTCTTGTTTTTACCATTCTATGGTAGAAATTACAGATTCCCATTGCTTGGTC
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| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTTAAGCTGCGGCTGCGGAAAGATGTACCCTGATCTGGCAGAGAAGAACACCACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGCCGGCTCCGGTGAGGCCGACCATGGCTGCAGCTGCGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAA |
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| Protein seq | MSCGGSCNCGLSCGCGKMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC |
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| Function | Metallothionein-like protein 4A [UniProtKB/Swiss-Prot:Q0IMG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g38290 | LOC_Os12g38290.1 | Chr12 | 23512497 | 23513477 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTTAAGCTGCGGCTGCGGAAAGATGTACCCTGATCTGGCAGAGAAGAACACCACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGCCGGCTCCGGTGAGGCCGACCATGGCTGCAGCTGCGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAA
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| Protein seq | MSCGGSCNCGLSCGCGKMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0571000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38300 | RBH | 0.000000 | 0.0 | 0.471628 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0571000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017750 | SBH | 0.0 | 972.047729 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017860 | SBH | 0.0 | 2.086544 | 0.093533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018440 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017740 | RBH | 0.0 | 1.025041 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017160 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0311800 | RBH | 0.273651 | 28.0809785 | 0.0303345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017200 | RBH | 0.147680 | 87.702766 | 0.377473 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342800 | RBH | 0.715797 | 16.606123 | 0.221199 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017230 | RBH | 0.0 | 3.527248 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017510 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017430 | RBH | 0.0 | 180.332397 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017640 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017640 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017410 | SBH | 0.0 | 1.020206 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017230 | RBH | 0.0 | 113.367744 | 0.0 |
