Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0016140 | OGI:12055080 | 12/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:21452150-21452897 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcaccaggggaacaaagcggaagagaggggaggacgtccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggagtgctcatcaatctggattcgggggcggggtcgagtgcctctggcaaatctgacgccagctctgctcctccttgtgacaacgacatcaatgtggccgcccgcttcctaacaaccgtttgtgcgacctccccagaaggcgttcgctctttcgtccgttgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaaggtaatgcccattgtaatttgtttttgatccattgcatttgtgctttgttaacattgggtggtagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtctgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcgggagaaacctcaccaaggatcaggtgaagtacatatggcgtcaatgtcgtaaaaggtggatgctttggacgtggttggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccaggtatgtcacctacccttatgttgtgttcggtcgaactag
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| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacgtccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggagtgctcatcaatctggattcgggggcggggtcgagtgcctctggcaaatctgacgccagctctgctcctccttgtgacaacgacatcaatgtggccgcccgcttcctaacaaccgtttgtgcgacctccccagaaggcgttcgctctttcgtccgttgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtctgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcgggagaaacctcaccaaggatcaggtgaagtacatatggcgtcaatgtcgtaaaaggtggatgctttggacgtggttggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccaggtatgtcacctacccttatgttgtgttcggtcgaactag
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| Protein seq | MGTRGTKRKRGEDVHPSTAAKGQAVPLAFAAPAPHGVLINLDSGAGSSASGKSDASSAPPCDNDINVAARFLTTVCATSPEGVRSFVRCVSPATVVRSLDLDLIRPISPQKMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWRQCRKRWMLWTWLESKATGIGRDPITQAIVADDDWWEDKDQVCHLPLCCVRSN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0016140 | OsCMeo_12g0016140.01 | Chr12 | 21452150 | 21452897 | + | NAM | ||
| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacgtccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggagtgctcatcaatctggattcgggggcggggtcgagtgcctctggcaaatctgacgccagctctgctcctccttgtgacaacgacatcaatgtggccgcccgcttcctaacaaccgtttgtgcgacctccccagaaggcgttcgctctttcgtccgttgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtctgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcgggagaaacctcaccaaggatcaggtgaagtacatatggcgtcaatgtcgtaaaaggtggatgctttggacgtggttggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccaggtatgtcacctacccttatgttgtgttcggtcgaactag
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| Protein seq | MGTRGTKRKRGEDVHPSTAAKGQAVPLAFAAPAPHGVLINLDSGAGSSASGKSDASSAPPCDNDINVAARFLTTVCATSPEGVRSFVRCVSPATVVRSLDLDLIRPISPQKMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYIWRQCRKRWMLWTWLESKATGIGRDPITQAIVADDDWWEDKDQVCHLPLCCVRSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10490 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011450 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015490 | RBH | 0.074953 | 0.065806 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019860 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0275000 | RBH | 0 | 0.0357375 | 0.0548985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0306700 | RBH | 0.0111955 | 0 | 0.4505625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012350 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012130 | SBH | 1.345772 | 10.986785 | 1.771287 |
