Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0011450 | OGI:10049110 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:15749118-15752130 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcaccaggggaacaaagcggaagagaggggaggacatccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggactgctcatcaatctggattcggggacggggtcgagcgcctctggcaaatctgacgccagctctgcccctccttgtgacaatgacatcaatgtggccgcccgcttcctaacagccgtttgtgcgacctccccaaaaggcgttcgctctttcgtccgtcgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaaggtaatgcccattgtaatttgtttttgatccattgcatttgtgctttgttaacattgggtggtagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtccgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcggaagaaacctcaccaaggatcaggtgaagtacacatggcgtcaatgtcgtaaaaggtggatgctttggacgtggctggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccaggtatgtcacctacccttatgttgtgttcggtcgaactaggaagatagtgatttccatactgatttgcattaacacaaggacccatgacatttgtttagttcatgaaatctccacagttatctatttttaggtataatcatacatattgttcatagaaagtgttatgtacctttgtaaaaccttgtgtttctaggctacaaaatcagaatgtaatttttttgctataatgaatgggggtacaatttctctgctgcattcactaccttccaataaattgattaggaagcagcaaatgcatggttggtactatttttattattctcttgtaggtcttttcaacaaaactgagccatatcttgagatatttggtattcctatgctattgttgatgccatagtttgacatgacatcaacctctatgtgacatgtcacattgcttacatggcataaagttttttgatttttagtctgctcatcatctgctattattgtcaatgcatatcaatatcatatagtacttcctccattttcttgaattagttagaccgtaaaatctaggtaaaatgttacctgcagtctgcagatgttaaaacatggtgccaccaataatagctatgttgctgcgtacattagttatgtacttgtatgctgctgtcttttttttagttcaaaaagcgtcaacaaaatgcaaaaatgaaaatcgatttaagaaactacttatgttcatttcaatgtaaatttattttgttactcaaccattttcgcagaaaaaggacggagctcgtgtcttcaaagattcccctctcaagcacatcaaccttcactgtgctattttttcggggtgcacagtggtagggaaccactctgctattgcaggcgcagcaccagcacctcctcagcagccaactccaaggcccaacatcaatatctcacagctgctagctcaacaacaaaacattgcgactccaggagtttcaagtgcaggaaaaggcaagaggctagcagatgaagctggcacttcgaggggatcggcttcaaagaagagtcgaagtgactcagccggtgatgccctgcaccggctagctgatttgcgagtggagtcgatggagagctgttcccggaaggtggaagaggacagggctagaagtgcagcagcttgcatccagttggtggtagctgatggacataacccatggagtgatttattctttatggcactggatgtatttgagcgtgcttattggcgtcaatggttcattgattactgccctacacccgagtcacggtcccattacatagtacagacatggcaaaagcaatttggcggaaaaggagctggtggccaaggaggtggacagcctggatacgaaggaggaactgggcagcagcgttatggtgtaggagcacccccgccaactggccagcagggttatggtggaggagtacccccgccaacttgttcaggaggtcatacagggtttggaggttggtaggggggtggccctggtggaggtgggggtcctggtagcgtagatggtaatgggttctattgagttgctcttgcttggtcagttgcctggagctcactgagaggaggagattcatatgagaggcataaaaaataatgctcaccatattgtttgcagtaggattttagcatctgcttaactgtttttttcttgtatgatttgtaccctcttgttgtatgattttagcatcttgttgtatgatttttagcatctgctttactcatttctaatgcttgtagtctgaactagtaattgtggtatgtcactgtgaaattttttatgcagttaatttttttattgaacaccatgcgtgcatttttttacaaataatgttgtaatggttaatgtaagctatatatttttcttgtttcgaaggaatcacacaatgagcgacggttcatcgtggagttcggatggtactgaagggcaatacacgagcgatgaggatgacgctattattgcaatgatgcaagagattttagctgctcctccaagagctcctcgtcgtgtcccaacccaatttggaataacttggatgctagagacaatggcgaatcctgcacagtgccgtgcgattttccgtttaacggaatatcagatatacactctacatggaattttggaaaatgccccttacaacctgcatgggagtaatgatgtaagttctttggaggcactaggaatcttcttgttcacaatggcaggaaataattctgcaagggagtcgaacaatcattgggtccggtcgaactcgacggtgtctatctatttttga
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| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacatccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggactgctcatcaatctggattcggggacggggtcgagcgcctctggcaaatctgacgccagctctgcccctccttgtgacaatgacatcaatgtggccgcccgcttcctaacagccgtttgtgcgacctccccaaaaggcgttcgctctttcgtccgtcgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtccgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcggaagaaacctcaccaaggatcaggtgaagtacacatggcgtcaatgtcgtaaaaggtggatgctttggacgtggctggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccagaaaaaggacggagctcgtgtcttcaaagattcccctctcaagcacatcaaccttcactgtgctattttttcggggtgcacagtggtagggaaccactctgctattgcaggcgcagcaccagcacctcctcagcagccaactccaaggcccaacatcaatatctcacagctgctagctcaacaacaaaacattgcgactccaggagtttcaagtgcaggaaaaggcaagaggctagcagatgaagctggcacttcgaggggatcggcttcaaagaagagtcgaagtgactcagccggtgatgccctgcaccggctagctgatttgcgagtggagtcgatggagagctgttcccggaaggtggaagaggacagggctagaagtgcagcagcttgcatccagttggtggtagctgatggacataacccatggagtgatttattctttatggcactggatgtatttgagcgtgcttattggcgtcaatggttcattgattactgccctacacccgagtcacggtcccattacatagtacagacatggcaaaagcaatttggcggaaaaggagctggtggccaaggaggtggacagcctggatacgaaggaggaactgggcagcagcgttatggtgtaggagcacccccgccaactggccagcagggttatggtggaggagtacccccgccaacttgttcaggaggtcatacagggtttggaggttggaatcacacaatgagcgacggttcatcgtggagttcggatggtactgaagggcaatacacgagcgatgaggatgacgctattattgcaatgatgcaagagattttagctgctcctccaagagctcctcgtcgtgtcccaacccaatttggaataacttggatgctagagacaatggcgaatcctgcacagtgccgtgcgattttccgtttaacggaatatcagatatacactctacatggaattttggaaaatgccccttacaacctgcatgggagtaatgatgtaagttctttggaggcactaggaatcttcttgttcacaatggcaggaaataattctgcaagggagtcgaacaatcattgggtccggtcgaactcgacggtgtctatctatttttga
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| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPKGVRSFVRRVSPATVVRSLDLDLIRPISPQKMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYTWRQCRKRWMLWTWLESKATGIGRDPITQAIVADDDWWEDKDQKKDGARVFKDSPLKHINLHCAIFSGCTVVGNHSAIAGAAPAPPQQPTPRPNINISQLLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSAGDALHRLADLRVESMESCSRKVEEDRARSAAACIQLVVADGHNPWSDLFFMALDVFERAYWRQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTGFGGWNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFRLTEYQIYTLHGILENAPYNLHGSNDVSSLEALGIFLFTMAGNNSARESNNHWVRSNSTVSIYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0011450 | OsCMeo_10g0011450.01 | Chr10 | 15749118 | 15752130 | + | NAM | ||
| CDS seq | atgggcaccaggggaacaaagcggaagagaggggaggacatccatccgtcgactgcagccaaggggcaggctgtgcctttggcgttcgccgcaccggctcctcacggactgctcatcaatctggattcggggacggggtcgagcgcctctggcaaatctgacgccagctctgcccctccttgtgacaatgacatcaatgtggccgcccgcttcctaacagccgtttgtgcgacctccccaaaaggcgttcgctctttcgtccgtcgtgtgtcgccggcgacggttgttcggtccctcgatttggacctgatccggcccatctcgccacaaaagatggcggagggtaaaatccgatggagcgacgatgaaattggcatatttcttgaggcatgcttggaggagttgtccgcaatgaccataacatccacttgtccaaagccgcaaggctacaagaacctcatacagaagatgaaggagagaatcggaagaaacctcaccaaggatcaggtgaagtacacatggcgtcaatgtcgtaaaaggtggatgctttggacgtggctggaatcaaaggctaccggcattggccgtgacccgataactcaagccattgttgctgacgacgattggtgggaagacaaggaccagaaaaaggacggagctcgtgtcttcaaagattcccctctcaagcacatcaaccttcactgtgctattttttcggggtgcacagtggtagggaaccactctgctattgcaggcgcagcaccagcacctcctcagcagccaactccaaggcccaacatcaatatctcacagctgctagctcaacaacaaaacattgcgactccaggagtttcaagtgcaggaaaaggcaagaggctagcagatgaagctggcacttcgaggggatcggcttcaaagaagagtcgaagtgactcagccggtgatgccctgcaccggctagctgatttgcgagtggagtcgatggagagctgttcccggaaggtggaagaggacagggctagaagtgcagcagcttgcatccagttggtggtagctgatggacataacccatggagtgatttattctttatggcactggatgtatttgagcgtgcttattggcgtcaatggttcattgattactgccctacacccgagtcacggtcccattacatagtacagacatggcaaaagcaatttggcggaaaaggagctggtggccaaggaggtggacagcctggatacgaaggaggaactgggcagcagcgttatggtgtaggagcacccccgccaactggccagcagggttatggtggaggagtacccccgccaacttgttcaggaggtcatacagggtttggaggttggaatcacacaatgagcgacggttcatcgtggagttcggatggtactgaagggcaatacacgagcgatgaggatgacgctattattgcaatgatgcaagagattttagctgctcctccaagagctcctcgtcgtgtcccaacccaatttggaataacttggatgctagagacaatggcgaatcctgcacagtgccgtgcgattttccgtttaacggaatatcagatatacactctacatggaattttggaaaatgccccttacaacctgcatgggagtaatgatgtaagttctttggaggcactaggaatcttcttgttcacaatggcaggaaataattctgcaagggagtcgaacaatcattgggtccggtcgaactcgacggtgtctatctatttttga
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| Protein seq | MGTRGTKRKRGEDIHPSTAAKGQAVPLAFAAPAPHGLLINLDSGTGSSASGKSDASSAPPCDNDINVAARFLTAVCATSPKGVRSFVRRVSPATVVRSLDLDLIRPISPQKMAEGKIRWSDDEIGIFLEACLEELSAMTITSTCPKPQGYKNLIQKMKERIGRNLTKDQVKYTWRQCRKRWMLWTWLESKATGIGRDPITQAIVADDDWWEDKDQKKDGARVFKDSPLKHINLHCAIFSGCTVVGNHSAIAGAAPAPPQQPTPRPNINISQLLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSAGDALHRLADLRVESMESCSRKVEEDRARSAAACIQLVVADGHNPWSDLFFMALDVFERAYWRQWFIDYCPTPESRSHYIVQTWQKQFGGKGAGGQGGGQPGYEGGTGQQRYGVGAPPPTGQQGYGGGVPPPTCSGGHTGFGGWNHTMSDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVPTQFGITWMLETMANPAQCRAIFRLTEYQIYTLHGILENAPYNLHGSNDVSSLEALGIFLFTMAGNNSARESNNHWVRSNSTVSIYF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0187701 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0187701 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011510 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011750 | RBH | 0.0 | 0.0 | 0.106350 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015490 | SBH | 0.074953 | 0.065806 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0275000 | SBH | 0 | 0.0357375 | 0.0548985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005860 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0324700 | RBH | 0 | 0.076042 | 0.0111155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015460 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015620 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012350 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012130 | SBH | 1.345772 | 10.986785 | 1.771287 |
