Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0023490 | OGI:11080840 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:27216018-27217825 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaagcactgcggtggacctacgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatatcagtgaggagatcttagaattgacagaactgcgaactctgataataaatcatactagacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcccatgttgcgggtactgatactgaaagtagagtggtttcgatctgaaatgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtatccgtgacagatacgtctttgtgggtgttaaaattgccagccacatttgctcagctttaccatctgctggtgttagatgttaaaggtttcctcaatttgtcattccccttaaatgaagatatgagtgacctcaccgagttgcggcatgtaataatcgactcggaagatcctcattttccacacattggaagacatgagtcactccgaacatttaagcatttcactgtaaagatggaagcggggtatgagttatatcagctgaagcgactgaacaagcttcatggtgaactgaatatttacggccttgaaaatgtttcaagcaatgaggatgctcttcaagccgaactgcataagaagaaaaacctcactggagtgaaactgtcctggggtagcccccaagaacaagatatccaatcaaaggtacttagggcccttcgcccaccggtgcggcttcaaacatttcaaatcgttcgctacaagggttcggagtatccagactggatgatgaccgatggtccagaagtcccagagtgcctgcaataccttaagctcaaatactgtagagaactgggaggagaaattcctaagcgtaacaagtttttcaagtatcttcgtacactccatgttgccgactgcagctggacggactttccagacaatatggagcgccttgagtcgctccaggagttattaatcgatgattgccctaatcttctatcacttccaacagtactgccccaatctctttgtatacttcatatttctaactgtggcagatggaaccactggccggataacatggaggaccactggtcgctgctggagttaaatattgaagattgccgtgatattgaatcacttccagcacagctgccgggctctcttgagaaattgaaggtaacggccggatgccgcgaaattagttcgcttccagtaatgccccattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctgcaaaacacctggacatcaacactatgaaaatatcagccacgttccccacaaaataattgaatacggtaaggctttaaatcctcttttattgctgcgtaccaatattcccctgttgattaatgtatttgtgaagaagtgggcttgtcaacagattcagacgaggacgattcagacgaggacgaagaaatggaagacaatcaatga
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| CDS seq | atggaagcactgcggtggacctacgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatatcagtgaggagatcttagaattgacagaactgcgaactctgataataaatcatactagacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcccatgttgcgggtactgatactgaaagtagagtggtttcgatctgaaatgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtatccgtgacagatacgtctttgtgggtgttaaaattgccagccacatttgctcagctttaccatctgctggtgttagatgttaaaggtttcctcaatttgtcattccccttaaatgaagatatgagtgacctcaccgagttgcggcatgtaataatcgactcggaagatcctcattttccacacattggaagacatgagtcactccgaacatttaagcatttcactgtaaagatggaagcggggtatgagttatatcagctgaagcgactgaacaagcttcatggtgaactgaatatttacggccttgaaaatgtttcaagcaatgaggatgctcttcaagccgaactgcataagaagaaaaacctcactggagtgaaactgtcctggggtagcccccaagaacaagatatccaatcaaaggtacttagggcccttcgcccaccggtgcggcttcaaacatttcaaatcgttcgctacaagggttcggagtatccagactggatgatgaccgatggtccagaagtcccagagtgcctgcaataccttaagctcaaatactgtagagaactgggaggagaaattcctaagcgtaacaagtttttcaagtatcttcgtacactccatgttgccgactgcagctggacggactttccagacaatatggagcgccttgagtcgctccaggagttattaatcgatgattgccctaatcttctatcacttccaacagtactgccccaatctctttgtatacttcatatttctaactgtggcagatggaaccactggccggataacatggaggaccactggtcgctgctggagttaaatattgaagattgccgtgatattgaatcacttccagcacagctgccgggctctcttgagaaattgaaggtaacggccggatgccgcgaaattagttcgcttccagtaatgccccattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctgcaaaacacctggacatcaacactatgaaaatatcagccacgttccccacaaaataattgaatacgattcagacgaggacgattcagacgaggacgaagaaatggaagacaatcaatga
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| Protein seq | MEALRWTYEHLDVPVQRCFSYCSIFPRGHHFYSDELINLWVAEGFIDSYGGKYELEAVGQLYFDKLVSCSFLQKENLRDSFTVPDLVHFLAVEVAGSECFSIKNGWEGDLPQNVHHLFIEIDDGNISEEILELTELRTLIINHTRQNWQNLSYEIFERVFMNLPMLRVLILKVEWFRSEMKIFDVPQSINLLRHLRYFGFRVSVTDTSLWVLKLPATFAQLYHLLVLDVKGFLNLSFPLNEDMSDLTELRHVIIDSEDPHFPHIGRHESLRTFKHFTVKMEAGYELYQLKRLNKLHGELNIYGLENVSSNEDALQAELHKKKNLTGVKLSWGSPQEQDIQSKVLRALRPPVRLQTFQIVRYKGSEYPDWMMTDGPEVPECLQYLKLKYCRELGGEIPKRNKFFKYLRTLHVADCSWTDFPDNMERLESLQELLIDDCPNLLSLPTVLPQSLCILHISNCGRWNHWPDNMEDHWSLLELNIEDCRDIESLPAQLPGSLEKLKVTAGCREISSLPVMPHSLLELILGSRNQEFITSCKTPGHQHYENISHVPHKIIEYDSDEDDSDEDEEMEDNQ |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0023490 | OsCMeo_11g0023490.01 | Chr11 | 27216018 | 27217825 | + | NAM | ||
| CDS seq | atggaagcactgcggtggacctacgaacatcttgatgttcctgtccaacgatgcttttcttattgcagtattttccccagaggacatcatttttacagtgatgagttaattaatttgtgggtggcagaagggtttattgattcttatggaggaaaatatgagctggaagcagttggtcagctgtactttgacaaactagtatcatgctcatttctacagaaagaaaatttgagggattcctttacagttccagatcttgtgcattttttagcagtggaggtcgcaggaagtgaatgtttcagtattaaaaatggttgggaaggagatcttcctcaaaatgttcaccacctttttattgagattgacgacggaaatatcagtgaggagatcttagaattgacagaactgcgaactctgataataaatcatactagacagaattggcaaaatttgagctacgaaatctttgagcgtgtgttcatgaacctgcccatgttgcgggtactgatactgaaagtagagtggtttcgatctgaaatgaagatttttgatgtcccacaatctattaatttgttaaggcatctgcgctattttggtttcagggtatccgtgacagatacgtctttgtgggtgttaaaattgccagccacatttgctcagctttaccatctgctggtgttagatgttaaaggtttcctcaatttgtcattccccttaaatgaagatatgagtgacctcaccgagttgcggcatgtaataatcgactcggaagatcctcattttccacacattggaagacatgagtcactccgaacatttaagcatttcactgtaaagatggaagcggggtatgagttatatcagctgaagcgactgaacaagcttcatggtgaactgaatatttacggccttgaaaatgtttcaagcaatgaggatgctcttcaagccgaactgcataagaagaaaaacctcactggagtgaaactgtcctggggtagcccccaagaacaagatatccaatcaaaggtacttagggcccttcgcccaccggtgcggcttcaaacatttcaaatcgttcgctacaagggttcggagtatccagactggatgatgaccgatggtccagaagtcccagagtgcctgcaataccttaagctcaaatactgtagagaactgggaggagaaattcctaagcgtaacaagtttttcaagtatcttcgtacactccatgttgccgactgcagctggacggactttccagacaatatggagcgccttgagtcgctccaggagttattaatcgatgattgccctaatcttctatcacttccaacagtactgccccaatctctttgtatacttcatatttctaactgtggcagatggaaccactggccggataacatggaggaccactggtcgctgctggagttaaatattgaagattgccgtgatattgaatcacttccagcacagctgccgggctctcttgagaaattgaaggtaacggccggatgccgcgaaattagttcgcttccagtaatgccccattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctgcaaaacacctggacatcaacactatgaaaatatcagccacgttccccacaaaataattgaatacgattcagacgaggacgattcagacgaggacgaagaaatggaagacaatcaatga
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| Protein seq | MEALRWTYEHLDVPVQRCFSYCSIFPRGHHFYSDELINLWVAEGFIDSYGGKYELEAVGQLYFDKLVSCSFLQKENLRDSFTVPDLVHFLAVEVAGSECFSIKNGWEGDLPQNVHHLFIEIDDGNISEEILELTELRTLIINHTRQNWQNLSYEIFERVFMNLPMLRVLILKVEWFRSEMKIFDVPQSINLLRHLRYFGFRVSVTDTSLWVLKLPATFAQLYHLLVLDVKGFLNLSFPLNEDMSDLTELRHVIIDSEDPHFPHIGRHESLRTFKHFTVKMEAGYELYQLKRLNKLHGELNIYGLENVSSNEDALQAELHKKKNLTGVKLSWGSPQEQDIQSKVLRALRPPVRLQTFQIVRYKGSEYPDWMMTDGPEVPECLQYLKLKYCRELGGEIPKRNKFFKYLRTLHVADCSWTDFPDNMERLESLQELLIDDCPNLLSLPTVLPQSLCILHISNCGRWNHWPDNMEDHWSLLELNIEDCRDIESLPAQLPGSLEKLKVTAGCREISSLPVMPHSLLELILGSRNQEFITSCKTPGHQHYENISHVPHKIIEYDSDEDDSDEDEEMEDNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0668100 | SBH | 0.545508 | 1.187026 | 0.660127 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44580 | SBH | 0.270107 | 0.700377 | 0.157062 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0668100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024040 | SBH | 0.0 | 0.0 | 18.927458 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023860 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023530 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023370 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023930 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0433100 | RBH | 0.3235845 | 0.9096115 | 0.009182 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024020 | SBH | 0.311849 | 0.106123 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024110 | SBH | 0.420982 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023690 | RBH | 0.0 | 0.0 | 0.463645 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024040 | SBH | 0.0 | 0.0 | 0.0 |
