Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_11g0007880 OGI:11019650 | 6/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr11:6516006-6522510
Gene Symbol -
DNA seq

tcatcgtactgcatatgtatggttagtggagtgactcaccgtggaggcgtggccgtcgttgcgacttctggttcttctaactagtaggtcatccttgtcaaacaccgacggcttctctacctgactacgcttttcttccctcaccttgttaaagatgcctgtgtagttgtctgccgggcggagcggcgagtcccactcgccgaactttggcacggcggacgcgaccgagtgcttcctcggctggctgaggcgatcgcgggagaaagaagaaggctcgattgaccggcgttgccgtcgacgattgtcgattgaatcgcttgtgcgagaggcatctgctaattccgcgtgaggaacttcttcgctttctatctctgcctgtgaatgaagtcattggtactaactagtaaaaatgtgcatcattgcaacatatacagcttctgtttttgcaaatagaacataaaattcgtagaatcattcatgatcccctgccatggtaggaaaaggacataatttattcaacttctcttatggtaggctttcacggtaaataaaatgaggcaaagtgaaaactgaaaaggtaatgatgtgttctttttttttgttccataatgaaatctaaggagcttaatttcattacaattattacaaatgtatactgttgctatctttacgtttgcattaatcagaaaatcgggttgatatcttatgaattacgaacaacatgttatcttattaaattaattgtcacagatgccactacacccttatgcactatcattattgcttcagaaataaagcacatccgaggtgacaataacgtgtattctgtttatcaatttactgtgtttatttctgggcatatataaatgtaaatttacttcaccatagctgttgaggcgttgatgattaaggtgaggaactgaaaatatcccacatgggcaattgcaaatttaccactgttttgaatcattattgcaaacttaccactagcaaatttacaaaaatatcaccacgactatcattcaaatggcattgttacaaaatatttagaattagcggaaaatttgcaaatgcccacagaacctgaaaacttattatgccagggcattgtagcgatatatctaagcggaattcagccaggagattagcggatactgaaatgggatttatctgttattacttttgccacctataaacatataccatccgtcaggtgttgacagctttgcagtagtgtttctataagaatttattcagagtcaaatattttatttagcttggataagtgttatttggattcaggaagcatcttgtatttctcaagaacgtgttaattccttacatctacaataagtttatcagtctaaagtaaatcccccccccccaaaaaaaaaaagtttatcagtctacaataggtttatagaccatggtagtaacatagaatttatattcactacataaaaaacgaaatgattcaattgaaaacttctggaagcattctggtacacacaagtctgttacaactagtaccttgtatgcccgtggaacatcataatttggctcgtgagaaaatggcgactcgtcctcaatcgtaatatctgtcccacttggctcattagccttttgcttttcttcatctaaaaaaattgcattaatagcttatcttcagtgtaaaactgtacgtatttgtaactatatgatcccaatagatcatatttaatactataaatttgtaaaattacaaataatttaacaaaacaaccacagaaattttttaagctgcattactgcaaaactatcaaaactacatattgtaaaagttctgtaaggagtaaggacaaccatgcttgggagggagaatctaacatatgtaattttgagaggaaaatggtaataaatcattagattaagacaaacttaacctgaatatataattttgtgacaattttatcaaagtgtctgtagttttgctaaatttactcctatataataggtttttgtctagtaagttaaatacatgttaacatatcaaaacctaatattctggttctagtgaatgaaaaaagaatgtaataatgatatggatcacaacgatttttctcattatattactacatattatatttgaaatcatataaaagctaaaaaaaatgtgtttgtgctttcaaagaagaaaatgtttacaagggttttgaactaatagtcctgttgtcaacttcctagtattattttcacaaaaaaagaactttcctaatataaaacagtgtttatttatttgttttctttataaatatctaaacttgtatagaagtaaattttggtttaaagcaatttaataagttctctctagacacacgagacaagttagccacatcaatcactatgaattcttgtttttcgattacatgtattaaatggaagattcatgtgtgtaccaccacatacacacacccacaggtatcctctttaaaacacgataaagagatggagaccaatgttaaatccatgaactattaacttatttgtgtgatagttttcttatataacaaaatacatagtggggactaaagtagagtacctgaacttgaagatattccttgtaaatctgaaatcttggaaaccctgacactagcagaccagcaaattcaattaaagccagaggcaacaagaaaaaataacattttcatataacaatttttttttgcattgtgtcctcatataactaagttttccttggaattcccaattttgaactattgatctaataattaaattaatttaattttctagattttacaattactattaaaagaatagttaatttatctgtatttgtaccaatatacaaaaaagtttagaattaaagtttatttgtatgaacatgttcatagggaactaatattattaaaactaggtgaaaagaatccaccacattctttgtgaaagctacagatcaccatatttttttgtaggattagagatcacgacatttatcaaacaaaagagaaatgtatacaccattgattttcagacaggttatagtttagattggtatgatttttaatatatttgtattatatcggtatgataaatccaattgtacttcagaaataaaacttacatattatatagcaaatacgattatatgttcaataagcaaaccattgatctagactgtgattgtttaaccagttctcaataattgtttgtatttaatttatactttgtaaataaattaatttacacaaacgaacttgatatcaatagctgatgcactagtaattataagttgaaacgtccccaattggtaatatgaaattttggtatgttctatattctaatacttattgctactacccagaggactgtaatttatttcaaaactcaaaatcagttattggaggaaaggagaagctcttactcttcttcaacacaattaatccatcgtatgttgaatctagaaatcctggaatgcttcttagtggcatcacttaacgcaaactcagcggctctcttgtcagattcctctgcacccgcagcagctccaatttgtccaatgatctcttgaaggttcaacaggtgttcaatgccggtaagaatatcaccatactgttcccccctgtggacattgaattctatcttgagcttccggagatttggcattgcctccgcctgaaaagcaagacgcagcacaccacatctgaatttgaaatacttgagaactgggaatgccttgtcgttaaagacaattgtttcttcagtggattgctggacatccaatgagagaacagtgagctcctgtaacattgtgaggctatgaacatcactgcatagcagttctctaacaacaattttcagaatgcggagtctctttaactgtccgatccatttgggcagtctggaaaagatgcaaatggtaggtaataactcaagtctctgaagacagaggggcggagatgaaacgatgctcgagcaatccatgtacatgctcgtgcctgaagaaggagccagaataagagttcttagtttacgaagtttccctagagaagaagctagagcggtaagatttctcttcaggcggccagacaattctgcagagcagttgagataaagttcttgcaggttcgtcatctctccaagaccccacacattttgttcagagttattgctgaggtctaatgactctagcgtgcatagagatgccatgcagccaatgttgtcaggcagatttgccacatctcgaagacgtaagtgcaataatttcgggagatgaacaatatccgatggaacattcgctactcttgcatttagttgcagtgtttccaaatattgtaggctctgtacggtggctggtagcttaacgatcatatcagttgtaacctgcacgtatctcagttgtaacaatctgaaaattcctctgagatcaaactcctcttgatcatcccaaaattcaagcattagaactctaagttgcttgaactgcaaagtcgaaggcagacactcagctagtccatagaagttgagtgaccgagcttgtgacagtgatatgtgcaccggttttgttgcatatttggtattgctgacatggagagacaatcgacggatcttgaaattaagtcttgtaataggttgagagtaatctaatgcagtggtgaagttctcttcaacagacatgtccttgacaacatcaaataccatgtgatggactgtacaagacaacaccatgtcactgtaggttctgttattaggttgcatcattcccctgctgacaagctcatcaaaatagctatctgctactgcattggcatcttccctttctgtttccctgataaaatcttcagcagtccattgttttaccaaatcggccttccagattatgcacccctctggatacattgtaagatattgcagacaggtcttcaaacgacagggaagacatctgtagcaaaggcggactatatttctgagcttgtcttctgaagtgtgatttgttgccatactagaagataaatgtttctgcacatggtgccatagctccaagttgtccacttcgctcgccaaaagtctggctatattgataattcctagtggcagcccaccacaatttctgacaatttcagttgaaacttccctcaaccgttcagaacaattttgttcagagccgaatgcactgttcaagaacaagtttagagagtcatctctgctaagaggcttcatcttacagatatcgtcagattgataatcacagcactctagagctacatcctcaatagttgttgtcattaatattctactacagtcctgtcccttgggaaaagcactgttaatgatatcccaagatgttgtttcccataaatcatcaattacaatgaaatacctgccaaataatttcaaaatttatcatgctaacatagtaaagggtccatctagaatccccgacctattaggctggatattgaacccattaaactttgagatgtttcgcagagcatttttgtctgtgtagcatgctaactcggttatttgccatggtgggccggtggcccaatgactaaactacaaaatataagagaaaaatggtgttgcttagtttagcaattattaggccctatttagatccgctggcaaaatttttcaccctgtcatattgaatgtttggacacatgcatggagtattaaatataaacgaaaaaaataactaattacatagattgcgtgtaaattgcgagacgaatcttttaaacttagcgtacctcttatcttgaatatgatcacgaatgttgtcaataaggtcttgcactgtgcagcgatcagccggtagtcgattatggcgtcgaaattgtgagagcatgcttcgaagaagccttttggtatctggcatccttgagacctgcacaaaagctcggcactcgaatcgccctcgaagttcgcagaacacttgtttggcaagcgcagtcttgcccacacctgcacatccaagaatggatactactttcagctgaggcaaggaaccgtcggtgagcttgttggtaagctcgaccttggatttccccatgccgacaaggtttatccccttccagtttggcgctggaatttggggacaggtaaatctcgatgtgcaacggccaagctcatagatctcgtgccgttgccgggcctcctcaatagaagctccaaattccccaattcggccgcagtcgaatgattccaaatctgcacctgaattagagcaggagtccatcgtattgtcgatgtagtcctcaatgtcataagataggtcacgaacctcgttcatccagtgcctcgccatcatggttggagtctccatctctgacagatccaccatggcggcctttacggcttccagatcttgtaggaggagctcgatcccgtccttcactggctctatcagctgctggtattcgggagtgagtagtacatggagcttcctgagaagcgaccccatggcacccatggaagcactcgtcgggacctccatctccat

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CDS seq

atggagatggaggtcccgacgagtgcttccatgggtgccatggggtcgcttctcaggaagctccatgtactactcactcccgaataccagcagctgatagagccagtgaaggacgggatcgagctcctcctacaagatctggaagccgtaaaggccgccatggtggatctgtcagagatggagactccaaccatgatggcgaggcactggatgaacgaggttcgtgacctatcttatgacattgaggactacatcgacaatacgatggactcctgctctaattcaggtgcagatttggaatcattcgactgcggccgaattggggaatttggagcttctattgaggaggcccggcaacggcacgagatctatgagcttggccgttgcacatcgagatttacctgtccccaaattccagcgccaaactggaaggggataaaccttgtcggcatggggaaatccaaggtcgagcttaccaacaagctcaccgacggttccttgcctcagctgaaagtagtatccattcttggatgtgcaggtgtgggcaagactgcgcttgccaaacaagtgttctgcgaacttcgagggcgattcgagtgccgagcttttgtgcaggactgtagtagaatattaatgacaacaactattgaggatgtagctctagagtgctgtgattatcaatctgacgatatctgtaagatgaagcctcttagcagagatgactctctaaacttgttcttgaacagtgcattcggctctgaacaaaattgttctgaacggttgagggaagtttcaactgaaattgtcagaaattgtggtgggctgccactaggaattatcaatatagccagacttttggcgagcgaagtggacaacttggagctatggcaccatgtgcagaaacatttatcttctagtatggcaacaaatcacacttcagaagacaagctcagaaatatagtccgcctttgctacagatgtcttccctgtcgtttgaagacctgtctgcaatatcttacaatgtatccagaggggtgcataatctggaaggccgatttggtaaaacaatggactgctgaagattttatcagggaaacagaaagggaagatgccaatgcagtagcagatagctattttgatgagcttgtcagcaggggaatgatgcaacctaataacagaacctacagtgacatggtgttgtcttgtacagtccatcacatggtatttgatgttgtcaaggacatgtctgttgaagagaacttcaccactgcattagattactctcaacctattacaagacttaatttcaagatccgtcgattgtctctccatgtcagcaataccaaatatgcaacaaaaccggtgcacatatcactgtcacaagctcggtcactcaacttctatggactagctgagtgtctgccttcgactttgcagttcaagcaacttagagttctaatgcttgaattttgggatgatcaagaggagtttgatctcagaggaattttcagattgttacaactgagatacgtgcaggagctcactgttctctcattggatgtccagcaatccactgaagaaacaattgtctttaacgacaaggcattcccagttctcaagtatttcaaattcagatgtggtgtgctgcgtcttgcttttcaggcggaggcaatgccaaatctccggaagctcaagatagaattcaatgtccacaggggggaacagtatggtgatattcttaccggcattgaacacctgttgaaccttcaagagatcattggacaaattggagctgctgcgggtgcagaggaatctgacaagagagccgctgagtttgcgttaagtgatgccactaagaagcattccaggatttctagattcaacatacgatggattaattgtgttgaagaagatgtcagggtttccaagatttcagatttacaaggaatatcttcaagttcagatgaagaaaagcaaaaggctaatgagccaagtgggacagatattacgattgaggacgagtcgccattttctcacgagccaaattatgatgttccacgggcatacaaggcagagatagaaagcgaagaagttcctcacgcggaattagcagatgcctctcgcacaagcgattcaatcgacaatcgtcgacggcaacgccggtcaatcgagccttcttctttctcccgcgatcgcctcagccagccgaggaagcactcggtcgcgtccgccgtgccaaagttcggcgagtgggactcgccgctccgcccggcagacaactacacaggcatctttaacaaggtgagggaagaaaagcgtagtcaggtagagaagccgtcggtgtttgacaaggatgacctactagttagaagaaccagaagtcgcaacgacggccacgcctccacggtgagtcactccactaaccatacatatgcagtacgatga

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Protein seq

MEMEVPTSASMGAMGSLLRKLHVLLTPEYQQLIEPVKDGIELLLQDLEAVKAAMVDLSEMETPTMMARHWMNEVRDLSYDIEDYIDNTMDSCSNSGADLESFDCGRIGEFGASIEEARQRHEIYELGRCTSRFTCPQIPAPNWKGINLVGMGKSKVELTNKLTDGSLPQLKVVSILGCAGVGKTALAKQVFCELRGRFECRAFVQDCSRILMTTTIEDVALECCDYQSDDICKMKPLSRDDSLNLFLNSAFGSEQNCSERLREVSTEIVRNCGGLPLGIINIARLLASEVDNLELWHHVQKHLSSSMATNHTSEDKLRNIVRLCYRCLPCRLKTCLQYLTMYPEGCIIWKADLVKQWTAEDFIRETEREDANAVADSYFDELVSRGMMQPNNRTYSDMVLSCTVHHMVFDVVKDMSVEENFTTALDYSQPITRLNFKIRRLSLHVSNTKYATKPVHISLSQARSLNFYGLAECLPSTLQFKQLRVLMLEFWDDQEEFDLRGIFRLLQLRYVQELTVLSLDVQQSTEETIVFNDKAFPVLKYFKFRCGVLRLAFQAEAMPNLRKLKIEFNVHRGEQYGDILTGIEHLLNLQEIIGQIGAAAGAEESDKRAAEFALSDATKKHSRISRFNIRWINCVEEDVRVSKISDLQGISSSSDEEKQKANEPSGTDITIEDESPFSHEPNYDVPRAYKAEIESEEVPHAELADASRTSDSIDNRRRQRRSIEPSSFSRDRLSQPRKHSVASAVPKFGEWDSPLRPADNYTGIFNKVREEKRSQVEKPSVFDKDDLLVRRTRSRNDGHASTVSHSTNHTYAVR

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_11g0007880 OsCMeo_11g0007880.01 Chr11 6516006 6522510 - NAM
CDS seq

atggagatggaggtcccgacgagtgcttccatgggtgccatggggtcgcttctcaggaagctccatgtactactcactcccgaataccagcagctgatagagccagtgaaggacgggatcgagctcctcctacaagatctggaagccgtaaaggccgccatggtggatctgtcagagatggagactccaaccatgatggcgaggcactggatgaacgaggttcgtgacctatcttatgacattgaggactacatcgacaatacgatggactcctgctctaattcaggtgcagatttggaatcattcgactgcggccgaattggggaatttggagcttctattgaggaggcccggcaacggcacgagatctatgagcttggccgttgcacatcgagatttacctgtccccaaattccagcgccaaactggaaggggataaaccttgtcggcatggggaaatccaaggtcgagcttaccaacaagctcaccgacggttccttgcctcagctgaaagtagtatccattcttggatgtgcaggtgtgggcaagactgcgcttgccaaacaagtgttctgcgaacttcgagggcgattcgagtgccgagcttttgtgcaggactgtagtagaatattaatgacaacaactattgaggatgtagctctagagtgctgtgattatcaatctgacgatatctgtaagatgaagcctcttagcagagatgactctctaaacttgttcttgaacagtgcattcggctctgaacaaaattgttctgaacggttgagggaagtttcaactgaaattgtcagaaattgtggtgggctgccactaggaattatcaatatagccagacttttggcgagcgaagtggacaacttggagctatggcaccatgtgcagaaacatttatcttctagtatggcaacaaatcacacttcagaagacaagctcagaaatatagtccgcctttgctacagatgtcttccctgtcgtttgaagacctgtctgcaatatcttacaatgtatccagaggggtgcataatctggaaggccgatttggtaaaacaatggactgctgaagattttatcagggaaacagaaagggaagatgccaatgcagtagcagatagctattttgatgagcttgtcagcaggggaatgatgcaacctaataacagaacctacagtgacatggtgttgtcttgtacagtccatcacatggtatttgatgttgtcaaggacatgtctgttgaagagaacttcaccactgcattagattactctcaacctattacaagacttaatttcaagatccgtcgattgtctctccatgtcagcaataccaaatatgcaacaaaaccggtgcacatatcactgtcacaagctcggtcactcaacttctatggactagctgagtgtctgccttcgactttgcagttcaagcaacttagagttctaatgcttgaattttgggatgatcaagaggagtttgatctcagaggaattttcagattgttacaactgagatacgtgcaggagctcactgttctctcattggatgtccagcaatccactgaagaaacaattgtctttaacgacaaggcattcccagttctcaagtatttcaaattcagatgtggtgtgctgcgtcttgcttttcaggcggaggcaatgccaaatctccggaagctcaagatagaattcaatgtccacaggggggaacagtatggtgatattcttaccggcattgaacacctgttgaaccttcaagagatcattggacaaattggagctgctgcgggtgcagaggaatctgacaagagagccgctgagtttgcgttaagtgatgccactaagaagcattccaggatttctagattcaacatacgatggattaattgtgttgaagaagatgtcagggtttccaagatttcagatttacaaggaatatcttcaagttcagatgaagaaaagcaaaaggctaatgagccaagtgggacagatattacgattgaggacgagtcgccattttctcacgagccaaattatgatgttccacgggcatacaaggcagagatagaaagcgaagaagttcctcacgcggaattagcagatgcctctcgcacaagcgattcaatcgacaatcgtcgacggcaacgccggtcaatcgagccttcttctttctcccgcgatcgcctcagccagccgaggaagcactcggtcgcgtccgccgtgccaaagttcggcgagtgggactcgccgctccgcccggcagacaactacacaggcatctttaacaaggtgagggaagaaaagcgtagtcaggtagagaagccgtcggtgtttgacaaggatgacctactagttagaagaaccagaagtcgcaacgacggccacgcctccacggtgagtcactccactaaccatacatatgcagtacgatga

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Protein seq

MEMEVPTSASMGAMGSLLRKLHVLLTPEYQQLIEPVKDGIELLLQDLEAVKAAMVDLSEMETPTMMARHWMNEVRDLSYDIEDYIDNTMDSCSNSGADLESFDCGRIGEFGASIEEARQRHEIYELGRCTSRFTCPQIPAPNWKGINLVGMGKSKVELTNKLTDGSLPQLKVVSILGCAGVGKTALAKQVFCELRGRFECRAFVQDCSRILMTTTIEDVALECCDYQSDDICKMKPLSRDDSLNLFLNSAFGSEQNCSERLREVSTEIVRNCGGLPLGIINIARLLASEVDNLELWHHVQKHLSSSMATNHTSEDKLRNIVRLCYRCLPCRLKTCLQYLTMYPEGCIIWKADLVKQWTAEDFIRETEREDANAVADSYFDELVSRGMMQPNNRTYSDMVLSCTVHHMVFDVVKDMSVEENFTTALDYSQPITRLNFKIRRLSLHVSNTKYATKPVHISLSQARSLNFYGLAECLPSTLQFKQLRVLMLEFWDDQEEFDLRGIFRLLQLRYVQELTVLSLDVQQSTEETIVFNDKAFPVLKYFKFRCGVLRLAFQAEAMPNLRKLKIEFNVHRGEQYGDILTGIEHLLNLQEIIGQIGAAAGAEESDKRAAEFALSDATKKHSRISRFNIRWINCVEEDVRVSKISDLQGISSSSDEEKQKANEPSGTDITIEDESPFSHEPNYDVPRAYKAEIESEEVPHAELADASRTSDSIDNRRRQRRSIEPSSFSRDRLSQPRKHSVASAVPKFGEWDSPLRPADNYTGIFNKVREEKRSQVEKPSVFDKDDLLVRRTRSRNDGHASTVSHSTNHTYAVR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.776358 6.061803 5.586281

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0226400 RBH 0.637885 0.299907 0.253275
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g11920 RBH 0.630975 0.327055 0.361226
Nipponbare | IRGSP 1.0 | RAP-db Os11g0226400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0008000 RBH 0.610084 8.867305 6.640977
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0008010 RBH 0.230996 1.065639 1.806433
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0007680 SBH 0.728379 4.617134 2.073140
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0008860 SBH 0.0 0.040590 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0007830 SBH 6.648267 20.408941 19.937519
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0105300 SBH 7.778872 29.778783 12.4184995
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0007840 SBH 0.502440 0.434221 1.512577
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0124900 SBH 6.3988355 32.3905935 0.088394
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0019020 SBH 0.831603 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0007910 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0009020 SBH 0.000000 34.296730 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0008910 SBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0007950 SBH 0.274147 8.383874 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G007970 RBH 0.249247 1.208426 1.071142
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0007780 RBH 0.352854 17.615908 4.935343
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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