Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0007740 | OGI:04044150 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:11112398-11113659 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTCAATTGGGTTATATGATGTTAGCTCTAGGTATAGGTTCTTATCAAGCTGCTTTATTCCATTTGATCACTCATGCTTATTCGAAAGCTTTATTATTCTTGGGATCCGGATCTGTTATTCATTCAATGGAACCTCTTGTTGGATATTCACCAGATAAAAGTCAGAATATGGTTCTTATGGGTGGTTTAAGAAAATACATTCCAATTACAAGAACTTGTTTTTTATGGGGTACCCTTTCTCTTTGTGGTATTCCACCTCTTGCTTGCTTCTGGTCCAAAGATGAAATCCTTAGTAATAGTTGGTTATATTCACCCTTTTTTGGAATAATAGCTTCTTTTACTGCAGGATTAACTGCGTTTTATATGTTTCGGATATATTTACTTACTTTTGATGGGTATTTGCGTGTTCATTTTCAAAATTACAGTAGTACTAAAGAGGATTCGTTGTATTCAATATCGTTATGGGGAAAAAGGATATCTAAAGGAGTCAATAGAGATTTCGTTTTATCAACAGCGAAGAGTGGAGTTTCTTTTTTTCACAAAATCTATCCAAAATTCATGTTAATACAGGAAATAGGATAGGGTCCTTTAGTACTTCATTGGGGACTAAAAACACTTTTGTCTATCCTCATGACCGGGAAATACTATGCTATTTCCTCTTCTTATATTACTGCTTTGTACTTTGTTTATTGGATCTATAGGAATCCATTTTGATAATGAAATAGGGGAATTAACCATATTATCAAAGTGGCTAACTCCCTCAATCAACTTTTTCCAAGAAAGTTCTAATTCTTCCATAAATTCATATGAATTTATCACTAATGCAATTTCTTCTGTAAGTCTAGCTATTTTTGGTCTATTCATAGCATATATGTTTTATGGATCTGCTTACTCTTTTTTTCAAAATTTGGATTTAATAAATTCCTTTGTAAAAGGGGGTCCGAAAAAGTATTTTTTCCATCAACTAAAAAAAAAGATATATAGTTGGTCATATAATCGCGGTTATATAGATATTTTCTATACTAGGATCTTTACCTTGGGTATAAGAGGATTAACCGAACTAACGCAGTTTTTCGACAAGGGTGTCATTGATGGAATTACCAATGGAGTAGGTCTTGCTAGTTTTTGTATAGGAGAAGAAATTAAATATGTAGGGGGAGGTCGAATTTCGTCTTATTTATTCTTTTTTTTATGTTATGTATCTGTGTTCTTATTCTTTTTTCTTTCTTAAGGAATTCCCCTATCTCCTGCCTAAGTAG
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| CDS seq | ATGTCTCAATTGGGTTATATGATGTTAGCTCTAGGTATAGGTTCTTATCAAGCTGCTTTATTCCATTTGATCACTCATGCTTATTCGAAAGCTTTATTATTCTTGGGATCCGGATCTGTTATTCATTCAATGGAACCTCTTGTTGGATATTCACCAGATAAAAGTCAGAATATGGTTCTTATGGGTGGTTTAAGAAAATACATTCCAATTACAAGAACTTGTTTTTTATGGGGTACCCTTTCTCTTTGTGGTATTCCACCTCTTGCTTGCTTCTGGTCCAAAGATGAAATCCTTAGAATCCATTTTGATAATGAAATAGGGGAATTAACCATATTATCAAAGTGGCTAACTCCCTCAATCAACTTTTTCCAAGAAAGTTCTAATTCTTCCATAAATTCATATGAATTTATCACTAATGCAATTTCTTCTTTTTTCGACAAGGGTGTCATTGATGGAATTACCAATGGAGTAGGTCTTGCTAGTTTTTGTATAGGAGAAGAAATTAAATATGAATTCCCCTATCTCCTGCCTAAGTAG
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| Protein seq | MSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPPLACFWSKDEILRIHFDNEIGELTILSKWLTPSINFFQESSNSSINSYEFITNAISSFFDKGVIDGITNGVGLASFCIGEEIKYEFPYLLPK |
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| Function | NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [UniProtKB/Swiss-Prot:P0C328] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0007740 | OsCMeo_10g0007740.01 | Chr10 | 11112398 | 11113659 | + | NAM | ||
| CDS seq | ATGTCTCAATTGGGTTATATGATGTTAGCTCTAGGTATAGGTTCTTATCAAGCTGCTTTATTCCATTTGATCACTCATGCTTATTCGAAAGCTTTATTATTCTTGGGATCCGGATCTGTTATTCATTCAATGGAACCTCTTGTTGGATATTCACCAGATAAAAGTCAGAATATGGTTCTTATGGGTGGTTTAAGAAAATACATTCCAATTACAAGAACTTGTTTTTTATGGGGTACCCTTTCTCTTTGTGGTATTCCACCTCTTGCTTGCTTCTGGTCCAAAGATGAAATCCTTAGAATCCATTTTGATAATGAAATAGGGGAATTAACCATATTATCAAAGTGGCTAACTCCCTCAATCAACTTTTTCCAAGAAAGTTCTAATTCTTCCATAAATTCATATGAATTTATCACTAATGCAATTTCTTCTTTTTTCGACAAGGGTGTCATTGATGGAATTACCAATGGAGTAGGTCTTGCTAGTTTTTGTATAGGAGAAGAAATTAAATATGAATTCCCCTATCTCCTGCCTAAGTAG
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| Protein seq | MSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPPLACFWSKDEILRIHFDNEIGELTILSKWLTPSINFFQESSNSSINSYEFITNAISSFFDKGVIDGITNGVGLASFCIGEEIKYEFPYLLPK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.562626 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21418 | RBH | 29.474489 | 28.095278 | 8.226164 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006700 | SBH | 23.914619 | 21.105518 | 66.116913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006780 | SBH | 15.564863 | 8.975279 | 37.378174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006780 | SBH | 4.496881 | 1.159165 | 2.466327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006680 | SBH | 177.139481 | 1.660040 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024430 | RBH | 11.081253 | 0.834469 | 3.900233 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006890 | RBH | 0.289887 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014710 | RBH | 140.105835 | 72.178970 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019690 | RBH | 43.245594 | 0.0 | 18.355183 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009960 | RBH | 76.446091 | 31.905334 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004740 | RBH | 61.455261 | 57.490326 | 70.580650 |
