Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0001240 | OGI:10005900 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:1534044-1538860 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATGGCCAAAGGCAGAGGATCTGCGTCCCTGCAAAATTTATACATTTTAGTTAGTTACCAAGATGCAAATATTTCAGTTTCAATTTGTGTGACAAAAAAGAAAATTATGTGCATCTTCAGATTGAATTTTGTTGTCACAAAATTCAGAATGAGTACTAGCTTACAACTAGAGATGGCAACGGGTGTACACCCATCAGGTTTTCTTAGCCTAGACCCACACCTGTGATGGTGAAAAGTTCCCACTTCAACACCCACATTTGCTCGCGGGTACAAGATTTTCCCTTCCCTGTACCCACACCTATGAGAGTAATGGGTATCCATTGGGTACCCATACCCACTACGCTAACTTAGAGAGCTTTTAATTTTGCACAATAATTAGACGATTACAACAACAACCACGAACATCATATAAGGTAACCTTAATTTTAATATTAACATTCAAATGCAAGTAAACAAACCATGTAAGAATTTGATCATATATGACAACTAAACAAACCATACTTGTATTAAATCATATATTAATGTTCAAATTAAGTAAACATCATGCTAAGCACACGGGTACTTTTTACCCATGGGTAAGTGGGTACGGGTGGCTAAAGAACAAACTCATACCCATTTACCCAACAGGTAAGGATTTTTTAGAACATGGGTAAGGATTTTTGTCTGTTAGTAAACCCATGGGTACAAGAATTAGACCGTATGTGACTTCTAATAGAGTAAACAACCTATCGGGTCTCGGGTTATGGGCCTCATTGCCATCTCTACTTATAACATTAGGGATACTCTCTCCGTCCCAAAATATAAGAACCTAGGACGAGTCGTCCTAGTACTATGAATCTAGACATGTTGCTTGTCCAGATTCGTAATACTAGAAAATGTCTAATCCGGTTCTAGATTATTATATTTTTGAGATAAAGGGCGTAGAATTTTACCCCAAAATCAGAAATGAGTACTCATTTTACCTCCAAAATGAGTACTAGATTGAATTATTTCTGCACTTTAAGGAATTCATTAGTTACTATTCCTAGAAAATCAGCAATTGTGGCATATACTAGTAATAGTTTAAAAATATTTACAAACACAAAAAACATTTCTTAGTAAAAATTACGAAAAATGACAAAAAAAAATCACAGATGTGACAAAAACAAAAACAATCCCTATAATTACGTAGGTAAGTTTAGTCTGTTGGAATAATCCTAGTTCACTTTCTCAACTCACGTTCCCTGTTTTCCACGTGTATGCTTTCCAAATGGTGTATTTTTTTTAAAAAATTATATACAAAAGTTGCTTTAAAAAATCATATTAGTTATTTTTTAAAAAAACTCATACTTAATTAATCATATGCTAATGAGTTACTCCGTTTTACATGCTGGAGATGTTAGTTCCTAACCTCAACCAAAAAAAACTCAGTCTTAGTGATGGGCACACCTCATCCGTAATAATAAAGCCATGTAACTGCTGGTTACTCCCTCCCTCTAAATATAAGAGGATTTAAAATTTATACACGATATAAATATATATGGCTCACTAATTTTAATTTTCAGTGCACAAAAGATCCAAATATTTCAGCCATTCAAATGCTTTGGAGGAAAAATTTAAGTAATCCAAAATTGTATTTTAACCACGGAAGTAACTGAAAGGATTTTTTTGTCCAAAACCGTAGTATACTCTCTTGTTTCTAATGGATAATTTGTTGACTTTTGGAAAAAAACCATCCGTGATTCACAAATATAAAAAAATATGTCATGCTTAAATTACCTTAATAAACTAAGTCACAGCCCAATAAACGATAATTACATAATTTTTTTAATAATATTAACAGAAAACATATATTGTGATACTAAACAACATAACAGTGCTTATATTTTGAATGAGATGTGTAATTACTTCCCGACAAAGCTTCGCATCTTTATCAGCGATGCTGCAAAGCAGAGCATATGGGAACCTGAAGCAGAGGGAATCAGGGAAGTGAAGAAAATCTGGCAAAACCTTGGTTGTTGAGGGCTTTCACAGTACACCTAGCTGTCAATCAGCCCCAGCCTTCTACGTTAGAGATTCCACGCCACATCCGCCTCTCTAGTTACCAAGTGAAGACCGTGGAGCCTAACTGGGTCCCGCGTTTCTCATTAGGATTTGTCAGGGCGAGGTGAGGCATGGCTCTGAGCGGCGCGTTGAAAGAGTGCATGGCCTAGTGCAACGCCACCACACTCATGTTAGACAACAACGGTCGTCCTGAGCTACTTACCACCCTAAGCTTGACGAGTTGGTGTCTGCGGTCCGGGGAGAGACGCAAATCAGAAGAAGGAAAGATGGCAGCGGCCAGCGGGGAGAGCCCTAGGCCAGATTTGGTGAGCTCGGCGACACCGTCATCTAGCTTTCTCCCCCTCCACCATAACTTTGGCAAGCGACCAAACCTTTTTTGCCATAGCTTTTCATTTTTTTATTTGGAATATCAACTAGAACAACCGAATATACAGTTCCTTAACATGTACTACATGGCCTGCGTTGCCAAATTCTACAAATGTGTTGTGCTCGTAATTAATTCCCAACAAATTATATGTGACTTTTCACATATTTTTATACTAATAATATTGTATATTAAGAAGAATTAATAGAACCTGACTGAAGTATGCAGTGATAAAACACGATTAAGAGAAACCAAGAAGTGAAAGCGCCTCATGGGATTTTAACATCACGTCTTAGCTTGATAGAGTACCCAAACATGTAACACACTGTACGTCTTGGTTCTTGGAATATCAACACAAGCAAACAAGTACAAGACGACACACAACTTATATGCAACAAAAGACATTATTGTTTGTATTCAAGATAAGTAAACATCTCTATGTGCTTTCAAACTCAACTGGGATCAATGAATGAAGTGAAGGGGAGCACTTTTTAAATGGCATAAGCTAATGCATGTTCCTTTGGCGTTTCATATATCTCCTCCGATCCGAAAATGTGCATGTTACTCATCGTCGTCCTTGGTCTAGCTACTCATCGTCATCCTCGGTCTAGCTCCAGTTTTTGATATGAATCTGAGCGGAGGACATTCCACTATTAACAAAGAAGTTGACCACACCGCTTACCATGGGATCATCCTCCGAGCATCTGACTTTAACACTCATAAGATGCTCACATGTAAATGATCTTTCATCAAGCTTGTCACCAATGCTTGCTTCAAACGTTTTCCAATGGTCCTATAGAAAGAAAAACAGGTTACCTATATCCTCTGATGGCATGTACACTTGTGCAAAAGCTTTCAAGTAGGATCAGTATACATTTGGAGGAAAAGATTTACATTTCCGAGTATCAGAGTTAGCTTCTCCAGTCTTGGTGAGTTCTGAAGGAAGACAATTAGTGTATAGAAGTTTCCATGCAGACACCAGTGACCGAGAGTCAGGCTGACAAGATTGAAGAATTTTGGACACCACTGCAGACTGTTTTGGATTGTCAGCTGCACAAGAACGAGGTGATTATGTGGCTACAAAACCAAACTAGCTAACAAAATTGAGTGTGTTAATATCATTTGATAAGTATGCTTGCAGTGCAGGTATTACAACATCTTCAAGATAATGAATGCTAAAAGACCACAGAGAATAAATAAGAACTTAAGGCAATAAAAATCCAGCGCTACCATCAATGGGATTCCATAACCTGAAGCATATGTGAATTAATTGTCACGATGATTTCCATGAAAGTCAGGTAGCTACCTTAATGAAAACACAATGCGAATAAGTCATGATTCACAAGGTAGTGGTGTCAGACTTCCAACAATTGATGAAGCATTTTCCATTTTTATGTTGCCTTTGGTTAAATAATCACTCAAATATTAGACAAGATGCATTTCAGTTGCTAACAGCAATACTAGTACATGCTAGATTCGTCAAATAGGAAATGTTCCAGTTTTATTGTGAAACAAGCTGCCAACTAAGATACTTCTGGCCAAGTAATCAACAGGTTGTTTTATCTATAGATTGTTGGCTCAGCCCATGCCCAGGAACACTCTCACACTCACGAACACAAACACCGGTGAGGGAGACGATGAACAATGGATTTTATAGCGACGAACGCCGCGGAGCCGATCGCTCCTGTATCTTGGCTTTATTACTCACTAAACCTTGCAAAGAAACAACGAAGGAGTACAGGGGCCTCTTATAGACCGGGGACACACCGGGAGCTAGCCTCCATGCCGGCCATTGTGTCACGTTCCGCAGAACCTGCTTGACGTCGCCGTGAGCCGCACGCTCGCCCGGACGACGCGGTTTCCTCCGCAAGAACCGACGCCACGCACACCACACATTCCCACGACTCGATCAACACTGCAACGGCCATGCAAACAACCATGCAGCAGCCATGCACTCGCGATCACGACTCAATCAAACTAACAGAACGCACACGACGCACACATGCAGCAGCGCGACACACACACACTGACTCAGTCATCCCATCAGCACATCAAGATTTCAAGATATAATAATTAGCCATGCAATGCTTAGTTTTTTCCATAGAACCGTAGAGGTAACTAATTTGGTGCAATTGTGAAGTGTCAAGACAAATAGCACGCTTAAGTTTCACCTTTTCAAGTTGATACCTAAATTAATATGCATGGATATACTGGGACAGAGGGGATTAGGGGAACATGCAAGATCAGTAAGCATACCTTTCTCCTGCCACAATAGAACTTCAAATTTTCAATGCCAGATAGGGTCCAGAGATAATTCCGTAAATCCCTAGCATCAAAATCATCGTGCGGCCATTGTCTATTAAGTCTAACTGATGCTCTCACTAGTGATTTCATGTCCTTTAGCACAA
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| CDS seq | ATGAAATCACTAGTGAGAGCATCAGTTAGACTTAATAGACAATGGCCGCACGATGATTTTGATGCTAGGGATTTACGGAATTATCTCTGGACCCTATCTGGCATTGAAAATTTGAAGTTCTATTGTGGCAGGAGAAAGCTGACAATCCAAAACAGTCTGCAGTGGTGTCCAAAATTCTTCAATCTTGTCAGCCTGACTCTCGGTCACTGGTGTCTGCATGGAAACTTCTATACACTAATTGTCTTCCTTCAGAACTCACCAAGACTGGAGAAGCTAACTCTGATACTCGGAAATGACCATTGGAAAACGTTTGAAGCAAGCATTGGTGACAAGCTTGATGAAAGATCATTTACATGTGAGCATCTTATGAGTGTTAAAGTCAGATGCTCGGAGGATGATCCCATGCTATGGCAAAAAAGGTTTGGTCGCTTGCCAAAGTTATGGTGGAGGGGGAGAAAGCTAGATGACGGTGTCGCCGAGCTCACCAAATCTGGCCTAGGGCTCTCCCCGCTGGCCGCTGCCATCTTTCCTTCTTCTGATTTGCGTCTCTCCCCGGACCGCAGACACCAACTCGTCAAGCTTAGGGTGGGACGCAGATCCTCTGCCTTTGGCCATTAA
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| Protein seq | MKSLVRASVRLNRQWPHDDFDARDLRNYLWTLSGIENLKFYCGRRKLTIQNSLQWCPKFFNLVSLTLGHWCLHGNFYTLIVFLQNSPRLEKLTLILGNDHWKTFEASIGDKLDERSFTCEHLMSVKVRCSEDDPMLWQKRFGRLPKLWWRGRKLDDGVAELTKSGLGLSPLAAAIFPSSDLRLSPDRRHQLVKLRVGRRSSAFGH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0001240 | OsCMeo_10g0001240.01 | Chr10 | 1534044 | 1538860 | - | NAM | ||
| CDS seq | ATGAAATCACTAGTGAGAGCATCAGTTAGACTTAATAGACAATGGCCGCACGATGATTTTGATGCTAGGGATTTACGGAATTATCTCTGGACCCTATCTGGCATTGAAAATTTGAAGTTCTATTGTGGCAGGAGAAAGCTGACAATCCAAAACAGTCTGCAGTGGTGTCCAAAATTCTTCAATCTTGTCAGCCTGACTCTCGGTCACTGGTGTCTGCATGGAAACTTCTATACACTAATTGTCTTCCTTCAGAACTCACCAAGACTGGAGAAGCTAACTCTGATACTCGGAAATGACCATTGGAAAACGTTTGAAGCAAGCATTGGTGACAAGCTTGATGAAAGATCATTTACATGTGAGCATCTTATGAGTGTTAAAGTCAGATGCTCGGAGGATGATCCCATGCTATGGCAAAAAAGGTTTGGTCGCTTGCCAAAGTTATGGTGGAGGGGGAGAAAGCTAGATGACGGTGTCGCCGAGCTCACCAAATCTGGCCTAGGGCTCTCCCCGCTGGCCGCTGCCATCTTTCCTTCTTCTGATTTGCGTCTCTCCCCGGACCGCAGACACCAACTCGTCAAGCTTAGGGTGGGACGCAGATCCTCTGCCTTTGGCCATTAA
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| Protein seq | MKSLVRASVRLNRQWPHDDFDARDLRNYLWTLSGIENLKFYCGRRKLTIQNSLQWCPKFFNLVSLTLGHWCLHGNFYTLIVFLQNSPRLEKLTLILGNDHWKTFEASIGDKLDERSFTCEHLMSVKVRCSEDDPMLWQKRFGRLPKLWWRGRKLDDGVAELTKSGLGLSPLAAAIFPSSDLRLSPDRRHQLVKLRVGRRSSAFGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127000 | SBH | 0.837057 | 0.604194 | 1.839073 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0126500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001320 | SBH | 0.033080 | 2.588777 | 0.220496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001260 | SBH | 0.000000 | 0.000000 | 1.974653 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001290 | SBH | 0.346493 | 0.000000 | 0.536902 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001220 | SBH | 0.017392 | 0.009777 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001210 | SBH | 5.722209 | 4.579731 | 12.433402 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034200 | SBH | 2.079148 | 2.0945665 | 7.0703795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001210 | SBH | 0.177105 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | SBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0055010 | SBH | 0.806118 | 0.0 | 0.894464 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001660 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001300 | SBH | 0.049427 | 0.830985 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001280 | SBH | 0.108976 | 0.000000 | 0.000000 |
