Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0014550 | OGI:04026240 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:18420049-18421903 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatcttgctggatcagattcttccaagtttccatccaagatatccataggcaccgcagcttgtttgacactgataagaaagaccatataacataaccataatttccacacagacccatcattccaataatgtagtgtccaagaaaattccttccaaacatgactagctagtggcactggtatagagttggtaaatgaggtacttgctgcaatggtgacaaccctgccactgcccttacttttgataaaactagtactttgataaacccgaactgtagcaagctcctctttgtggaatatcaattgttcatacgagaattcttggtccttagtattcaaccagtacacatctacttcaccatcttcaagtgttattttgtatgataatttgcagctctctgttatagtccaatccgcactaattaaatatgttgcaccagaagtagcttctgattgcatcagtttatagccagtgggcttctgccataattccgatgagagcgaagtatacaactcgaaccaattctgagaagaatcactatatgtttttgatataaatttcctttcccagcaaacctcataggatgtcatgttcgatctccttcgctgcataaaactctcaccatccaacaattctcctttaccacaaaataactgtaaacacttccaaagttctctagcagaaagcagagaacagcccggagaccacaatattcttctcacataattccagctcatccaactaggaaccatagagaaatcttccttgaaccttgccaataaccttttgactgctaacaggtgattgcctccataggacatagctgttcctgcccaatatttccccttccccaaatactgtggatgtgtacagggcctcagctcaattgatctcctgagcatttcttccctatcatctagtgcataaggtattatgtcaatgatgaatgggctcactgaatcatgtggcgctacatctgaaaaacaactaaggaataaccaagtttctagccactgtggcggtggccatggttgtatctgttgcacatcatgttgtttccactcaaactctaaccaagttgctggatgcttcttaaccagggaacccttgcatatgactcgacagggaggtgcccaagtctgtagactagtcacctctaccatgtttactagtttggtacctgtgttgtccatgttgagaaggaacacacaaggctgggccaggaatgcgaccatgacttggtcggtgtcacacttgacgtcaaggcccaatgtcgaacacttggtgtgtgtcacctcaggacaattagtggtcccggtataggtgtcacaggttgcctcctctccaacaaccaactccatgaacgccatagaagtggtggcacatgcaaccaccgtagccatggtgtggtcgggtatgacgccaggacttgagcaattcgtcgggcaccttgtgggcatcaagctaccagctccaactccatgattagagcaccccttcaagcacttggcaaccgtcaaggcagtcagctcgatgttgtggcttgagctcgttgccgcatgcatgctgttttcattgaagcacactggagatagcgatgtcttgggtgttggagatgatgcctccctgaggtcggttgtggctgccttgatgatgacagttgcatcttctgcgccattgtgagcttccatctcttcaaacttctccaagacccggttgagcttctcctctaatttgcgcttggcatccatccattcctcaagtaacaaccttagtgcttcatccctggatactttctcctccttcatgacaaggataatatcttcctcgtacatttcgaatgggctcgacat
More
|
||||||||||
| CDS seq | atgtcgagcccattcgaaatgtacgaggaagatattatccttgtcatgaaggaggagaaagtatccagggatgaagcactaaggttgttacttgaggaatggatggatgccaagcgcaaattagaggagaagctcaaccgggtcttggagaagtttgaagagatggaagctcacaatggcgcagaagatgcaactgtcatcatcaaggcagccacaaccgacctcagggaggcatcatctccaacacccaagacatcgctatctccagtgtgcttcaatgaaaacagcatgcatgcggcaacgagctcaagccacaacatcgagctgactgccttgacggttgccaagtgcttgaaggggtgctctaatcatggagttggagctggtagcttgatgcccacaaggtgcccgacgaattgctcaagtcctggcgtcatacccgaccacaccatggctacggtggttgcatgtgccaccacttctatggcgttcatggagttggttgttggagaggaggcaacctgtgacacctataccgggaccactaattgtcctgaggtgacacacaccaagtgttcgacattgggccttgacgtcaagtgtgacaccgaccaaatacaaccatggccaccgccacagtggctagaaacttggttattccttagttgtttttcagatgtagcgccacatgattcagtgagcccattcatcattgacataataccttatgcactagatgatagggaagaaatgctcaggagatcaattgagctgaggccctgtacacatccacagtatttggggaaggggaaatattgggcaggaacagctatgtcctatggaggcaatcacctgttagcagtcaaaaggttattggcaaggttcaaggaagatttctctatggttcctagttggatgagctggaattatgtgagaagaatattgtggtctccgggctgttctctgctttctgctagagaactttggaagtgtttacagttattttgtggtaaaggagaattgttggatggtgagagttttatgcagcgaaggagatcgaacatgacatcctatgaggtttgctgggaaaggaaatttatatcaaaaacatatagtgattcttctcagaattggttcgagttgtatacttcgctctcatcggaattatggcagaagcccactggctataaactgatgcaatcagaagctacttctggtgcaacatatttaattagtgcggattggactataacagagagctgcaaattatcatacaaaataacacttgaagatggtgaagtagatgtgtactggttgaatactaaggaccaagaattctcgtatgaacaattgatattccacaaagaggagcttgctacagttcgggtttatcaaagtactagttttatcaaaatgtcaaacaagctgcggtgcctatggatatcttggatggaaacttggaagaatctgatccagcaagattaa
More
|
||||||||||
| Protein seq | MSSPFEMYEEDIILVMKEEKVSRDEALRLLLEEWMDAKRKLEEKLNRVLEKFEEMEAHNGAEDATVIIKAATTDLREASSPTPKTSLSPVCFNENSMHAATSSSHNIELTALTVAKCLKGCSNHGVGAGSLMPTRCPTNCSSPGVIPDHTMATVVACATTSMAFMELVVGEEATCDTYTGTTNCPEVTHTKCSTLGLDVKCDTDQIQPWPPPQWLETWLFLSCFSDVAPHDSVSPFIIDIIPYALDDREEMLRRSIELRPCTHPQYLGKGKYWAGTAMSYGGNHLLAVKRLLARFKEDFSMVPSWMSWNYVRRILWSPGCSLLSARELWKCLQLFCGKGELLDGESFMQRRRSNMTSYEVCWERKFISKTYSDSSQNWFELYTSLSSELWQKPTGYKLMQSEATSGATYLISADWTITESCKLSYKITLEDGEVDVYWLNTKDQEFSYEQLIFHKEELATVRVYQSTSFIKMSNKLRCLWISWMETWKNLIQQD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0014550 | OsCMeo_05g0014550.01 | Chr05 | 18420049 | 18421903 | - | NAM | ||
| CDS seq | atgtcgagcccattcgaaatgtacgaggaagatattatccttgtcatgaaggaggagaaagtatccagggatgaagcactaaggttgttacttgaggaatggatggatgccaagcgcaaattagaggagaagctcaaccgggtcttggagaagtttgaagagatggaagctcacaatggcgcagaagatgcaactgtcatcatcaaggcagccacaaccgacctcagggaggcatcatctccaacacccaagacatcgctatctccagtgtgcttcaatgaaaacagcatgcatgcggcaacgagctcaagccacaacatcgagctgactgccttgacggttgccaagtgcttgaaggggtgctctaatcatggagttggagctggtagcttgatgcccacaaggtgcccgacgaattgctcaagtcctggcgtcatacccgaccacaccatggctacggtggttgcatgtgccaccacttctatggcgttcatggagttggttgttggagaggaggcaacctgtgacacctataccgggaccactaattgtcctgaggtgacacacaccaagtgttcgacattgggccttgacgtcaagtgtgacaccgaccaaatacaaccatggccaccgccacagtggctagaaacttggttattccttagttgtttttcagatgtagcgccacatgattcagtgagcccattcatcattgacataataccttatgcactagatgatagggaagaaatgctcaggagatcaattgagctgaggccctgtacacatccacagtatttggggaaggggaaatattgggcaggaacagctatgtcctatggaggcaatcacctgttagcagtcaaaaggttattggcaaggttcaaggaagatttctctatggttcctagttggatgagctggaattatgtgagaagaatattgtggtctccgggctgttctctgctttctgctagagaactttggaagtgtttacagttattttgtggtaaaggagaattgttggatggtgagagttttatgcagcgaaggagatcgaacatgacatcctatgaggtttgctgggaaaggaaatttatatcaaaaacatatagtgattcttctcagaattggttcgagttgtatacttcgctctcatcggaattatggcagaagcccactggctataaactgatgcaatcagaagctacttctggtgcaacatatttaattagtgcggattggactataacagagagctgcaaattatcatacaaaataacacttgaagatggtgaagtagatgtgtactggttgaatactaaggaccaagaattctcgtatgaacaattgatattccacaaagaggagcttgctacagttcgggtttatcaaagtactagttttatcaaaatgtcaaacaagctgcggtgcctatggatatcttggatggaaacttggaagaatctgatccagcaagattaa
More
|
|||||||
| Protein seq | MSSPFEMYEEDIILVMKEEKVSRDEALRLLLEEWMDAKRKLEEKLNRVLEKFEEMEAHNGAEDATVIIKAATTDLREASSPTPKTSLSPVCFNENSMHAATSSSHNIELTALTVAKCLKGCSNHGVGAGSLMPTRCPTNCSSPGVIPDHTMATVVACATTSMAFMELVVGEEATCDTYTGTTNCPEVTHTKCSTLGLDVKCDTDQIQPWPPPQWLETWLFLSCFSDVAPHDSVSPFIIDIIPYALDDREEMLRRSIELRPCTHPQYLGKGKYWAGTAMSYGGNHLLAVKRLLARFKEDFSMVPSWMSWNYVRRILWSPGCSLLSARELWKCLQLFCGKGELLDGESFMQRRRSNMTSYEVCWERKFISKTYSDSSQNWFELYTSLSSELWQKPTGYKLMQSEATSGATYLISADWTITESCKLSYKITLEDGEVDVYWLNTKDQEFSYEQLIFHKEELATVRVYQSTSFIKMSNKLRCLWISWMETWKNLIQQD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.831130 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45330 | RBH | 0.704908 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006750 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006800 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001530 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014730 | RBH | 1.306607 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0428900 | SBH | 0.783671 | 1.4138285 | 0.6814885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001590 | SBH | 0.073057 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0322400 | SBH | 0.3363885 | 0.538092 | 2.6156805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006740 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001580 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006800 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001520 | SBH | 0.185058 | 0.0 | 0.396917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001390 | SBH | 0.0 | 0.0 | 1.105446 |
