Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_10G001520 | OGI:10045440 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr10:2231731-2233794 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGAGCCCATTCGAAGTGTACGAGGAAGATATTATCCTTGTCATGAAGGAGGAGAAAGTATCCAGGGATGAAGCACTAAGGTTGTTACTTGAGGAATGGATGGATGCCAAGCGCAAATTAGAGGAGAAGCTCAACCGGGTCTTGGAGAAGTTTGAAGAGATGGAAGCTCACAATGGCGCAGAAGATGCAACTGTCATCATCAAGGCAGCCACAACCGACCTCAGGGAGGCATCATCTCCAACACCCAAGACATCGCTATCTCCAGTGTGCTTCAATGAAAACAGCATGCATGCGGCAACGAGCTCAAGCCACAACATCGAGCTGACTGCCTTGACGGTTGCCAAGTGCTTGAAGGGGTGCTCTAATCATGGAGTTGGAGCTGGTAGCTTGATGCCCACAAGGTGCCCGACGAATTGCTCAAGTCCCGGCGTCATACCCGACCACACCATGGCTACGGTGGTTGCATGTGCCACCACTTCTATGGCGTTCATGGAGTTGGTTGTTGGAGAGGAGGCAACCTGTGACACCTATACCGGGACCACTAATTGTCCTGAGGTGACACACACCAAGTGTTCGACATTGGGCCTTGACGTCAAGGGTGACACCGACCAAGTCATGGTCGCATTCCTGGCCCAGCCTTGTGTGTTCCTTCTCAACATGGACAACACAGGTACCAAACTAGTAAACATGGTAGAGGTGACTAGTCTACAGACTTGGGCACCTCCCTGTCGAGTCATATGCAAGGGTTCCCTGGTTAAGAAGCATCCAGCAACTTGGTTAGAGTTTGAGTGGAAACAACATGATGTGCAACAGATACAACCATGGCCACCGCCACAGTGGCTAGAAACTTGGTTATTCCTTAGTTGTTTTTCAGATGTAGCGCCACATGATTCAGTGAGCCCATTCATCATTGACATAATACCTTATGCACTAGATGATAGGGAAGAAATGCTCAGGAGATCAATTGAGCTGAGGCCCTGTACACATCCACAGTATTTGGGGAAGGGGAAATATTGGGCAGGAACAGCTATGTCCTATGGAGGCAATCACCTGTTAGCAGTCAAAAGGTTATTGGCAAGGTTCAAGGAAGATTTCTCTATGGTTCCTAGTTGGATGAGCTGGAATTATGTGAGAAGAATATTGTGGTCTCCGGGCTGTTCTCTGCTTTCTGCTAGAGAACTTTGGAAGTGTTTACAGTTATTTTGTGGTAAAGGAGAATTGTTGGATGGTGAGAGTTTTATGCAGCGAAGGAGATCGAACATGACATCCTATGAGGTTTGCTGGGAAAGGAAATTTATATCAAAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTCGCTCTCATCGGAATTATGGCAGAAGCCCACTGGCTATAAACTGATGCAATCAGAAGCTACTTCTGGTGCAACATATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTAAGGACCAAGAATTCTCGTATGAACAATTGATATTCCACAAAGAGGAGCTTGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCAGTGCCACTAGCTAGTCATGTTTGGAAGGAATTTTCTTGGACACTACATTATTGGAATGATGGGTCTGTGTGGAAATTATGGTTCTGTTATATGGTCTTTCTGATCAGTGTCAAACAAGCTGCGGTGCCTATGGATATCTTGGATGGAAACTTGGAAGAATCTGATCCAGCAAGATTAAAGATGTGGCCTGATCATCCAAAATATGTTCAGAGGCCGTGTGTAAATCAAAGGGATGAATTGCGTCTTAGTGCACCTGATCTACAAATATCATGGGATCCTGGTGGTTTATGTTTACTCAAGTTTCTAGCTATCTCTTCTCTTGGACAAGTCACATTTCAGTCAGTCAAATTCTCATTTCAAGACAGTTCTTCTCTCTTTCACATGTGA
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| CDS seq | ATGTCGAGCCCATTCGAAGTGTACGAGGAAGATATTATCCTTGTCATGAAGGAGGAGAAAGTATCCAGGGATGAAGCACTAAGGTTGTTACTTGAGGAATGGATGGATGCCAAGCGCAAATTAGAGGAGAAGCTCAACCGGGTCTTGGAGAAGTTTGAAGAGATGGAAGCTCACAATGGCGCAGAAGATGCAACTGTCATCATCAAGGCAGCCACAACCGACCTCAGGGAGGCATCATCTCCAACACCCAAGACATCGCTATCTCCAGTGTGCTTCAATGAAAACAGCATGCATGCGGCAACGAGCTCAAGCCACAACATCGAGCTGACTGCCTTGACGGTTGCCAAGTGCTTGAAGGGGTGCTCTAATCATGGAGTTGGAGCTGGTAGCTTGATGCCCACAAGGTGCCCGACGAATTGCTCAAGTCCCGGCGTCATACCCGACCACACCATGGCTACGGTGGTTGCATGTGCCACCACTTCTATGGCGTTCATGGAGTTGGTTGTTGGAGAGGAGGCAACCTGTGACACCTATACCGGGACCACTAATTGTCCTGAGGTGACACACACCAAGTGTTCGACATTGGGCCTTGACGTCAAGGATGTAGCGCCACATGATTCAGTGAGCCCATTCATCATTGACATAATACCTTATGCACTAGATGATAGGGAAGAAATGCTCAGGAGATCAATTGAGCTGAGGCCCTGTACACATCCACAGTATTTGGGGAAGGGGAAATATTGGGCAGGAACAGCTATGTCCTATGGAGGCAATCACCTGTTAGCAGTCAAAAGGTTATTGGCAAGGTTCAAGGAAGATTTCTCTATGGTTCCTAGTTGGATGAGCTGGAATTATGTGAGAAGAATATTGTGGTCTCCGGGCTGTTCTCTGCTTTCTGCTAGAGAACTTTGGAAGTGTTTACAGTTATTTTGTGGTAAAGGAGAATTGTTGGATGGTGAGAGTTTTATGCAGCGAAGGAGATCGAACATGACATCCTATGAGGTTTGCTGGGAAAGGAAATTTATATCAAAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTCGCTCTCATCGGAATTATGGCAGAAGCCCACTGGCTATAAACTGATGCAATCAGAAGCTACTTCTGGTGCAACATATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTAAGGACCAAGAATTCTCGTATGAACAATTGATATTCCACAAAGAGGAGCTTGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCAGTGCCACTAGCTAGTCATGTTTGGAAGGAATTTTCTTGGACACTACATTATTGGAATGATGGGTCTGTGTGGAAATTATGGTTCTGTTATATGGTCTTTCTGATCAGTGTCAAACAAGCTGCGGTGCCTATGGATATCTTGGATGGAAACTTGGAAGAATCTGATCCAGCAAGATTAAAGATGTGGCCTGATCATCCAAAATATGTTCAGAGGCCGTGTGTAAATCAAAGGGATGAATTGCGTCTTAGTGCACCTGATCTACAAATATCATGGGATCCTGGTGGTTTATGTTTACTCAAGTTTCTAGCTATCTCTTCTCTTGGACAAGTCACATTTCAGTCAGTCAAATTCTCATTTCAAGACAGTTCTTCTCTCTTTCACATGTGA
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| Protein seq | MSSPFEVYEEDIILVMKEEKVSRDEALRLLLEEWMDAKRKLEEKLNRVLEKFEEMEAHNGAEDATVIIKAATTDLREASSPTPKTSLSPVCFNENSMHAATSSSHNIELTALTVAKCLKGCSNHGVGAGSLMPTRCPTNCSSPGVIPDHTMATVVACATTSMAFMELVVGEEATCDTYTGTTNCPEVTHTKCSTLGLDVKDVAPHDSVSPFIIDIIPYALDDREEMLRRSIELRPCTHPQYLGKGKYWAGTAMSYGGNHLLAVKRLLARFKEDFSMVPSWMSWNYVRRILWSPGCSLLSARELWKCLQLFCGKGELLDGESFMQRRRSNMTSYEVCWERKFISKTYSDSSQNWFELYTSLSSELWQKPTGYKLMQSEATSGATYLISADWTITESCKLSYKITLEDGEVDVYWLNTKDQEFSYEQLIFHKEELATVWVYQSTSFIKSKGSGRVVTIAASTSFTNSIPVPLASHVWKEFSWTLHYWNDGSVWKLWFCYMVFLISVKQAAVPMDILDGNLEESDPARLKMWPDHPKYVQRPCVNQRDELRLSAPDLQISWDPGGLCLLKFLAISSLGQVTFQSVKFSFQDSSSLFHM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G001520 | OsN22_10G001520_01 | Chr10 | 2231731 | 2233794 | + | NAM | ||
| CDS seq | ATGTCGAGCCCATTCGAAGTGTACGAGGAAGATATTATCCTTGTCATGAAGGAGGAGAAAGTATCCAGGGATGAAGCACTAAGGTTGTTACTTGAGGAATGGATGGATGCCAAGCGCAAATTAGAGGAGAAGCTCAACCGGGTCTTGGAGAAGTTTGAAGAGATGGAAGCTCACAATGGCGCAGAAGATGCAACTGTCATCATCAAGGCAGCCACAACCGACCTCAGGGAGGCATCATCTCCAACACCCAAGACATCGCTATCTCCAGTGTGCTTCAATGAAAACAGCATGCATGCGGCAACGAGCTCAAGCCACAACATCGAGCTGACTGCCTTGACGGTTGCCAAGTGCTTGAAGGGGTGCTCTAATCATGGAGTTGGAGCTGGTAGCTTGATGCCCACAAGGTGCCCGACGAATTGCTCAAGTCCCGGCGTCATACCCGACCACACCATGGCTACGGTGGTTGCATGTGCCACCACTTCTATGGCGTTCATGGAGTTGGTTGTTGGAGAGGAGGCAACCTGTGACACCTATACCGGGACCACTAATTGTCCTGAGGTGACACACACCAAGTGTTCGACATTGGGCCTTGACGTCAAGGATGTAGCGCCACATGATTCAGTGAGCCCATTCATCATTGACATAATACCTTATGCACTAGATGATAGGGAAGAAATGCTCAGGAGATCAATTGAGCTGAGGCCCTGTACACATCCACAGTATTTGGGGAAGGGGAAATATTGGGCAGGAACAGCTATGTCCTATGGAGGCAATCACCTGTTAGCAGTCAAAAGGTTATTGGCAAGGTTCAAGGAAGATTTCTCTATGGTTCCTAGTTGGATGAGCTGGAATTATGTGAGAAGAATATTGTGGTCTCCGGGCTGTTCTCTGCTTTCTGCTAGAGAACTTTGGAAGTGTTTACAGTTATTTTGTGGTAAAGGAGAATTGTTGGATGGTGAGAGTTTTATGCAGCGAAGGAGATCGAACATGACATCCTATGAGGTTTGCTGGGAAAGGAAATTTATATCAAAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTCGCTCTCATCGGAATTATGGCAGAAGCCCACTGGCTATAAACTGATGCAATCAGAAGCTACTTCTGGTGCAACATATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTAAGGACCAAGAATTCTCGTATGAACAATTGATATTCCACAAAGAGGAGCTTGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCAGTGCCACTAGCTAGTCATGTTTGGAAGGAATTTTCTTGGACACTACATTATTGGAATGATGGGTCTGTGTGGAAATTATGGTTCTGTTATATGGTCTTTCTGATCAGTGTCAAACAAGCTGCGGTGCCTATGGATATCTTGGATGGAAACTTGGAAGAATCTGATCCAGCAAGATTAAAGATGTGGCCTGATCATCCAAAATATGTTCAGAGGCCGTGTGTAAATCAAAGGGATGAATTGCGTCTTAGTGCACCTGATCTACAAATATCATGGGATCCTGGTGGTTTATGTTTACTCAAGTTTCTAGCTATCTCTTCTCTTGGACAAGTCACATTTCAGTCAGTCAAATTCTCATTTCAAGACAGTTCTTCTCTCTTTCACATGTGA
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| Protein seq | MSSPFEVYEEDIILVMKEEKVSRDEALRLLLEEWMDAKRKLEEKLNRVLEKFEEMEAHNGAEDATVIIKAATTDLREASSPTPKTSLSPVCFNENSMHAATSSSHNIELTALTVAKCLKGCSNHGVGAGSLMPTRCPTNCSSPGVIPDHTMATVVACATTSMAFMELVVGEEATCDTYTGTTNCPEVTHTKCSTLGLDVKDVAPHDSVSPFIIDIIPYALDDREEMLRRSIELRPCTHPQYLGKGKYWAGTAMSYGGNHLLAVKRLLARFKEDFSMVPSWMSWNYVRRILWSPGCSLLSARELWKCLQLFCGKGELLDGESFMQRRRSNMTSYEVCWERKFISKTYSDSSQNWFELYTSLSSELWQKPTGYKLMQSEATSGATYLISADWTITESCKLSYKITLEDGEVDVYWLNTKDQEFSYEQLIFHKEELATVWVYQSTSFIKSKGSGRVVTIAASTSFTNSIPVPLASHVWKEFSWTLHYWNDGSVWKLWFCYMVFLISVKQAAVPMDILDGNLEESDPARLKMWPDHPKYVQRPCVNQRDELRLSAPDLQISWDPGGLCLLKFLAISSLGQVTFQSVKFSFQDSSSLFHM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.185058 | 0.0 | 0.396917 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0130701 | RBH | 0.0 | 0.0 | 0.191623 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17049 | RBH | 4.220286 | 2.539928 | 1.985631 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0130701 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001530 | RBH | 0.000000 | 0.0 | 0.339330 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0010120 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001530 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014730 | SBH | 1.306607 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001590 | RBH | 0.073057 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001570 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001390 | RBH | 0.0 | 0.0 | 1.105446 |
