Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g45330 | OGI:04026240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:26295551-26296521 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACAGGATTGGATACTTGGACGCTTCATGGAATGATGCTTCAGGTACTAGAACGCCATCAGGCACACCCATCATGGTATGGCATGTGACCTTGGTGTGGTCGGTGCCACCCTTGACCTCAAAGCCAACCATCGAACACTTGGTGTGCGTCTCCTTGGGATGACCAGGGGTGTTGACGTAGGGTTCACAGGTTGCGTTCCCTCTAGCCACTAACTCCACGGAGGCTAGAGAAGTGGTGGCGCACACAACCGCTGCTGCCATGTTGAGGTCGGACATGGTGTCGAGGCCAAAGCAAATCATCGAACACTTGGTGGGCGCTGAAGAAGGTGATGCTTGGGGTGATTGAAATGCAGCAGCCTCGGTGGTGGGGGTGAGCTCCTTGATGGAGGCACTGAATTCCTTAAATTCATTGCTCCTTTTGTCTCCCTCAGATTGATTGCTCTTGTCTCCCATCAAGCCGAACACCTCCAAAAAACGATCTAGCTTCTCATCAAATCTACATTGGGCATCCTTCAGTTCCTCTTGTAACAGATGGAGTGCTTCATCCCATGTGATGTTCTCCTCACTCATGACAAGAAGAACGTCTTCCTCAAACACCTCCAATGGGCTTGACATTTCATCGAACAGATGGTGGGCGCTGCTTGGATGAAAACTTTCCCAACCTAATTCCTGCTCCCTCTTGCATGGCTGCCTCCCAAACTCCTCCATGACAAGAATCCCAGTGAACCGAACGGCTCTGATACCAGATTGTTAGCAACCCAATATCTAAATCTCAATGAACCAATATACAGTACAAGCAATGAAGGTCGAGGTGGTTTTGAGCTGCAATTGTATTACTACAACTCAAGCTTTGTGGTGGAAATGGGATTGAATAGGGGATACAAGTTACTAGCAGAAGTAGGGAGGAAGAAGGAGATCGATAAGGTTCAAGCCCGAACCAAGTCGCCGCCGTTGCTGAGCCGCCGTGCCGG
More
|
||||||||||
| CDS seq | ATGGAGGAGTTTGGGAGGCAGCCATGCAAGAGGGAGCAGGAATTAGGTTGGGAAAGTTTTCATCCAAGCAGCGCCCACCATCTGTTCGATGAAATGTCAAGCCCATTGGAGGTGTTTGAGGAAGACGTTCTTCTTGTCATGAGTGAGGAGAACATCACATGGGATGAAGCACTCCATCTGTTACAAGAGGAACTGAAGGATGCCCAATGTAGATTTGATGAGAAGCTAGATCGTTTTTTGGAGGTGTTCGGCTTGATGGGAGACAAGAGCAATCAATCTGAGGGAGACAAAAGGAGCAATGAATTTAAGGAATTCAGTGCCTCCATCAAGGAGCTCACCCCCACCACCGAGGCTGCTGCATTTCAATCACCCCAAGCATCACCTTCTTCAGCGCCCACCAAGTGTTCGATGATTTGCTTTGGCCTCGACACCATGTCCGACCTCAACATGGCAGCAGCGGTTGTGTGCGCCACCACTTCTCTAGCCTCCGTGGAGTTAGTGGCTAGAGGGAACGCAACCTGTGAACCCTACGTCAACACCCCTGGTCATCCCAAGGAGACGCACACCAAGTGTTCGATGGTTGGCTTTGAGGTCAAGGGTGGCACCGACCACACCAAGGTCACATGCCATACCATGATGGGTGTGCCTGATGGCGTTCTAGTACCTGAAGCATCATTCCATGAAGCGTCCAAGTATCCAATCCTGTAG
More
|
||||||||||
| Protein seq | MEEFGRQPCKREQELGWESFHPSSAHHLFDEMSSPLEVFEEDVLLVMSEENITWDEALHLLQEELKDAQCRFDEKLDRFLEVFGLMGDKSNQSEGDKRSNEFKEFSASIKELTPTTEAAAFQSPQASPSSAPTKCSMICFGLDTMSDLNMAAAVVCATTSLASVELVARGNATCEPYVNTPGHPKETHTKCSMVGFEVKGGTDHTKVTCHTMMGVPDGVLVPEASFHEASKYPIL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g45330 | LOC_Os05g45330.1 | Chr05 | 26295551 | 26296521 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGTTTGGGAGGCAGCCATGCAAGAGGGAGCAGGAATTAGGTTGGGAAAGTTTTCATCCAAGCAGCGCCCACCATCTGTTCGATGAAATGTCAAGCCCATTGGAGGTGTTTGAGGAAGACGTTCTTCTTGTCATGAGTGAGGAGAACATCACATGGGATGAAGCACTCCATCTGTTACAAGAGGAACTGAAGGATGCCCAATGTAGATTTGATGAGAAGCTAGATCGTTTTTTGGAGGTGTTCGGCTTGATGGGAGACAAGAGCAATCAATCTGAGGGAGACAAAAGGAGCAATGAATTTAAGGAATTCAGTGCCTCCATCAAGGAGCTCACCCCCACCACCGAGGCTGCTGCATTTCAATCACCCCAAGCATCACCTTCTTCAGCGCCCACCAAGTGTTCGATGATTTGCTTTGGCCTCGACACCATGTCCGACCTCAACATGGCAGCAGCGGTTGTGTGCGCCACCACTTCTCTAGCCTCCGTGGAGTTAGTGGCTAGAGGGAACGCAACCTGTGAACCCTACGTCAACACCCCTGGTCATCCCAAGGAGACGCACACCAAGTGTTCGATGGTTGGCTTTGAGGTCAAGGGTGGCACCGACCACACCAAGGTCACATGCCATACCATGATGGGTGTGCCTGATGGCGTTCTAGTACCTGAAGCATCATTCCATGAAGCGTCCAAGTATCCAATCCTGTAG
More
|
|||||||
| Protein seq | MEEFGRQPCKREQELGWESFHPSSAHHLFDEMSSPLEVFEEDVLLVMSEENITWDEALHLLQEELKDAQCRFDEKLDRFLEVFGLMGDKSNQSEGDKRSNEFKEFSASIKELTPTTEAAAFQSPQASPSSAPTKCSMICFGLDTMSDLNMAAAVVCATTSLASVELVARGNATCEPYVNTPGHPKETHTKCSMVGFEVKGGTDHTKVTCHTMMGVPDGVLVPEASFHEASKYPIL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.704908 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16490 | RBH | 0.150141 | 0.250503 | 0.129081 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014550 | RBH | 0.0 | 0.000000 | 0.831130 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014730 | RBH | 1.306607 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0428900 | RBH | 0.783671 | 1.4138285 | 0.6814885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016870 | SBH | 0.076790 | 0.084866 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0322400 | SBH | 0.3363885 | 0.538092 | 2.6156805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017110 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021170 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017310 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016810 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017120 | SBH | 0.0 | 0.0 | 0.0 |
