Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0005370 | OGI:05013510 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:4829447-4833172 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaacaaccggagaggacgatattctaggttcaaagtttcaaataatgtttttgtaaggtgaataaccagaggaacacaaggacgatattctagcttgcggtgttcttataatgctcatgtagcccgtttagtttttcttctcctataaatccttgtaggagaacgagtgtctccagcaccggtattgttgctactctgatcagggtcattcacatcttgctcaggttgagaggtatttgatgtcacacttgtttccgcaagttctgttctcagatatccacttgcgctgatctgccgcctcagtctcaatatctcaccttttgctgtggccaattcctcttcaagtttcttagacatcgtttcaaaattctccctctccgttccaatcattctcataagattctgagcatcctccatatctttctgagcttccattgtacttctcttttgttgctcaagagcctctgaaagcatctctttctcttgttcaatagaagaaatcctagaatttgcgctatccagcctctcagacaggaactgtgtactctcatccacctctttttgtgaattggtcacctcatcaaggtctgcttgaagagcttgtcgtgcttcagattctacaatcgattgttccaccaatgcctcaagctccctgtttagagtagcattaattttacgttctctaacaagctcatctgttgcagactctaacttcttgtatgcatccagcagttctttattaaggtcctcacgtgcttccatagttgacactaattgattagaagtgacatcaagcttttcttgtgtcttttgaagtacatcccttactgatgctaattcatctgaaagaactttagaaactgcttctgcctctgcaattttgttagtcagaacctgtttcgctatattggactcgtctgtcaacttcgtaatctgggttatcaattgctgatttgatatcttcactctattaagctcttcagagaggttgaacaccttgtctctgtaatctgttagtgccccttcagtggactgaagaatctctgataatttcttatgagcttcagcctcattatctagcatagttctgttggtgtccaattcattgttcagctcagcaattataattttgttcttactagtgtcacttaatgcagcagatagtttttcttcaagctggttgagcaggttatctttctcgatcagtagttcagaatcacaagatgccctcaactcagaagcagctgcaaggtctgcatactgtttctttagttcacttatcttttcttctgctccagtttgtgcagtgtatagtgtttggacttccttattcaatgaatcaattgaacacatctttgagttcagatcatctttagttgcagaataaccctcctccagttgctctattttagaatctgcatattctaggcttgcttcggtttcattgtagatcaactgcagcttctgatagtcttcttccttggaagagagtgatgagcttagttccctgatggcttcctccttggcattcacctcttggctgagcagatttactttgtcctgtaaactatcaagtgcttccaacttctctctcagtttgccttcaaacacatgtttgtcgtcttctgcttgtgcaatgctactcttaagtcgatgtatctcttgtttaagctgctcaactagttctttctcccttctcacttcctcgtttaaagatgttactgttctcttagtcaaagtcaattgatccagaagggaagcttccttctcctggaacatcctagcctgtttcttttgttctgcatgttcattccatatctgtttctcatagttttccctaagcatggacattgctgcctcattttcagccaacttgatctccatctgagcaaacataacattacacttattaattagggaaaatatttttccaaaaatctgattttcacaatatgtacattccaatattataaaacataacctcaataatgaaggccctcatagtatatctgcaatctatattaattcatcgactatataagaggcatgcagatattctttcctaaggttcatagttcatactgattggtcctacactgttaccatgctatacaaaattgaagctacatagtggcaggtatatgcatccagaaacagaagtgtgaaagaactaggggcatgctattatgctctgcggtgaaggaaaataaattaccaaattaacacatgtctgtatgtttgatcaagactattatcagaacaccagaaaatcagcataattttctattgaaacagtgaccaaagaaagtcaaccaattttcaactatggatactattactgtctacagagttaacatcatgattactacatctccaagtgctaggggaaactaaacaaaacaaatgaagagtggtccgaaggtgtccaaatttgtaactgaagaaatagatgctatcctgtgtgtgcagcatggtgatatctcaaggtaacatgatggtgtacaacatatttctataagcatataaaatctgcgatgacaaataatagctaacaataatatagcagaagtaaaataactctaagatatgctgactgaaaggatggcagatggcatacagttgagacggtagattgcaacgcctctttttccctttgagaagcaccaaaaagtccagcaaaaacaccagaagcaataactgcgattgcattcagaagacctgcaagtggattcactgcaggtggtactttcacctcagccagagattcctcagccgaaggttcttcaggttgagtctcctcagtcttcacagtgtccattctatctgcaaaaaacagtgtaaccaaatttgtcgtgtgtcagatcatcacaaggtataatgcgaaccatttgactgataaagcaaacttatgtttaacacaaatgccaggagatgaacagaatgccacatatgtgcacaatcagaagtgtgtcaccgaggcaaagaatgatttctatgtgttatgaaacagatcagttctggtacacagctaaatacaggattaagttgccaattgggtcagggtgtgcaccaaatgtgtttgttgtgtggccataggagcattgccttgttgggatggagaaccattggaactaccatcttgtttcccatcttgttccctagatcgattcccttatctagctttgattcgatcctctccaaatcacactactaccacaatctgtgaatcctggtcaccagaatgcccgcgaactagtcgtgatcacatcatacacgaactgaccaaaaacaaatagccgaaataacaaaattccagaactgggattaatctgccattatgggttagtagcaactcaccagtgacgagatccaccgtcgtcgtcgacggcggccgcgccgcggccgccgcgaaggcggcgtcgcgcaggcggaggagcgggagcaccgagacgccgaccaggagcacggccctcctccccgccgccagcgccgacggcgacggggagcaggcggcggcgacacggcccgcgcgcgggcggcggcgggaggtgacgagcgagaggcgcgccgggtgcgggtgcggcggcgagaggaggaggtggtggtaggccatggccgccgagagctaaaaccctagccccctcagcgccctcgctgtcgctgctcggcggcggcggcggcggcgcggaagcggagcagcaggagcaggagtaggcgggctcgcc
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| CDS seq | atggcctaccaccacctcctcctctcgccgccgcacccgcacccggcgcgcctctcgctcgtcacctcccgccgccgcccgcgcgcgggccgtgtcgccgccgcctgctccccgtcgccgtcggcgctggcggcggggaggagggccgtgctcctggtcggcgtctcggtgctcccgctcctccgcctgcgcgacgccgccttcgcggcggccgcggcgcggccgccgtcgacgacgacggtggatctcgtcactgatagaatggacactgtgaagactgaggagactcaacctgaagaaccttcggctgaggaatctctggctgaggtgaaagtaccacctgcagtgaatccacttgcaggtcttctgaatgcaatcgcagttattgcttctggtgtttttgctggactttttggtgcttctcaaagggaaaaagaggcgttgcaatctaccgtctcaactatggagatcaagttggctgaaaatgaggcagcaatgtccatgcttagggaaaactatgagaaacagatatggaatgaacatgcagaacaaaagaaacaggctaggatgttccaggagaaggaagcttcccttctggatcaattgactttgactaagagaacagtaacatctttaaacgaggaagtgagaagggagaaagaactagttgagcagcttaaacaagagatacatcgacttaagagtagcattgcacaagcagaagacgacaaacatgtgtttgaaggcaaactgagagagaagttggaagcacttgatagtttacaggacaaagtaaatctgctcagccaagaggtgaatgccaaggaggaagccatcagggaactaagctcatcactctcttccaaggaagaagactatcagaagctgcagttgatctacaatgaaaccgaagcaagcctagaatatgcagattctaaaatagagcaactggaggagggttattctgcaactaaagatgatctgaactcaaagatgtgttcaattgattcattgaataaggaagtccaaacactatacactgcacaaactggagcagaagaaaagataagtgaactaaagaaacagtatgcagaccttgcagctgcttctgagttgagggcatcttgtgattctgaactactgatcgagaaagataacctgctcaaccagcttgaagaaaaactatctgctgcattaagtgacactagtaagaacaaaattataattgctgagctgaacaatgaattggacaccaacagaactatgctagataatgaggctgaagctcataagaaattatcagagattcttcagtccactgaaggggcactaacagattacagagacaaggtgttcaacctctctgaagagcttaatagagtgaagatatcaaatcagcaattgataacccagattacgaagttgacagacgagtccaatatagcgaaacaggttctgactaacaaaattgcagaggcagaagcagtttctaaagttctttcagatgaattagcatcagtaagggatgtacttcaaaagacacaagaaaagcttgatgtcacttctaatcaattagtgtcaactatggaagcacgtgaggaccttaataaagaactgctggatgcatacaagaagttagagtctgcaacagatgagcttgttagagaacgtaaaattaatgctactctaaacagggagcttgaggcattggtggaacaatcgattgtagaatctgaagcacgacaagctcttcaagcagaccttgatgaggtgaccaattcacaaaaagaggtggatgagagtacacagttcctgtctgagaggctggatagcgcaaattctaggatttcttctattgaacaagagaaagagatgctttcagaggctcttgagcaacaaaagagaagtacaatggaagctcagaaagatatggaggatgctcagaatcttatgagaatgattggaacggagagggagaattttgaaacgatgtctaagaaacttgaagaggaattggccacagcaaaaggtgagatattgagactgaggcggcagatcagcgcaagtggatatctgagaacagaacttgcggaaacaagtgtgacatcaaatacctctcaacctgagcaagatgtgaatgaccctgatcagagtagcaacaataccggtgctggagacactcgttctcctacaaggatttataggagaagaaaaactaaacgggctacatga
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| Protein seq | MAYHHLLLSPPHPHPARLSLVTSRRRPRAGRVAAACSPSPSALAAGRRAVLLVGVSVLPLLRLRDAAFAAAAARPPSTTTVDLVTDRMDTVKTEETQPEEPSAEESLAEVKVPPAVNPLAGLLNAIAVIASGVFAGLFGASQREKEALQSTVSTMEIKLAENEAAMSMLRENYEKQIWNEHAEQKKQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSSIAQAEDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIRELSSSLSSKEEDYQKLQLIYNETEASLEYADSKIEQLEEGYSATKDDLNSKMCSIDSLNKEVQTLYTAQTGAEEKISELKKQYADLAAASELRASCDSELLIEKDNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEAHKKLSEILQSTEGALTDYRDKVFNLSEELNRVKISNQQLITQITKLTDESNIAKQVLTNKIAEAEAVSKVLSDELASVRDVLQKTQEKLDVTSNQLVSTMEAREDLNKELLDAYKKLESATDELVRERKINATLNRELEALVEQSIVESEARQALQADLDEVTNSQKEVDESTQFLSERLDSANSRISSIEQEKEMLSEALEQQKRSTMEAQKDMEDAQNLMRMIGTERENFETMSKKLEEELATAKGEILRLRRQISASGYLRTELAETSVTSNTSQPEQDVNDPDQSSNNTGAGDTRSPTRIYRRRKTKRAT |
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| Function | MAR-binding filament-like protein 1-1 [UniProtKB/Swiss-Prot:Q9M7J4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0005370 | OsCMeo_05g0005370.01 | Chr05 | 4829447 | 4833172 | - | NAM | ||
| CDS seq | atggcctaccaccacctcctcctctcgccgccgcacccgcacccggcgcgcctctcgctcgtcacctcccgccgccgcccgcgcgcgggccgtgtcgccgccgcctgctccccgtcgccgtcggcgctggcggcggggaggagggccgtgctcctggtcggcgtctcggtgctcccgctcctccgcctgcgcgacgccgccttcgcggcggccgcggcgcggccgccgtcgacgacgacggtggatctcgtcactgatagaatggacactgtgaagactgaggagactcaacctgaagaaccttcggctgaggaatctctggctgaggtgaaagtaccacctgcagtgaatccacttgcaggtcttctgaatgcaatcgcagttattgcttctggtgtttttgctggactttttggtgcttctcaaagggaaaaagaggcgttgcaatctaccgtctcaactatggagatcaagttggctgaaaatgaggcagcaatgtccatgcttagggaaaactatgagaaacagatatggaatgaacatgcagaacaaaagaaacaggctaggatgttccaggagaaggaagcttcccttctggatcaattgactttgactaagagaacagtaacatctttaaacgaggaagtgagaagggagaaagaactagttgagcagcttaaacaagagatacatcgacttaagagtagcattgcacaagcagaagacgacaaacatgtgtttgaaggcaaactgagagagaagttggaagcacttgatagtttacaggacaaagtaaatctgctcagccaagaggtgaatgccaaggaggaagccatcagggaactaagctcatcactctcttccaaggaagaagactatcagaagctgcagttgatctacaatgaaaccgaagcaagcctagaatatgcagattctaaaatagagcaactggaggagggttattctgcaactaaagatgatctgaactcaaagatgtgttcaattgattcattgaataaggaagtccaaacactatacactgcacaaactggagcagaagaaaagataagtgaactaaagaaacagtatgcagaccttgcagctgcttctgagttgagggcatcttgtgattctgaactactgatcgagaaagataacctgctcaaccagcttgaagaaaaactatctgctgcattaagtgacactagtaagaacaaaattataattgctgagctgaacaatgaattggacaccaacagaactatgctagataatgaggctgaagctcataagaaattatcagagattcttcagtccactgaaggggcactaacagattacagagacaaggtgttcaacctctctgaagagcttaatagagtgaagatatcaaatcagcaattgataacccagattacgaagttgacagacgagtccaatatagcgaaacaggttctgactaacaaaattgcagaggcagaagcagtttctaaagttctttcagatgaattagcatcagtaagggatgtacttcaaaagacacaagaaaagcttgatgtcacttctaatcaattagtgtcaactatggaagcacgtgaggaccttaataaagaactgctggatgcatacaagaagttagagtctgcaacagatgagcttgttagagaacgtaaaattaatgctactctaaacagggagcttgaggcattggtggaacaatcgattgtagaatctgaagcacgacaagctcttcaagcagaccttgatgaggtgaccaattcacaaaaagaggtggatgagagtacacagttcctgtctgagaggctggatagcgcaaattctaggatttcttctattgaacaagagaaagagatgctttcagaggctcttgagcaacaaaagagaagtacaatggaagctcagaaagatatggaggatgctcagaatcttatgagaatgattggaacggagagggagaattttgaaacgatgtctaagaaacttgaagaggaattggccacagcaaaaggtgagatattgagactgaggcggcagatcagcgcaagtggatatctgagaacagaacttgcggaaacaagtgtgacatcaaatacctctcaacctgagcaagatgtgaatgaccctgatcagagtagcaacaataccggtgctggagacactcgttctcctacaaggatttataggagaagaaaaactaaacgggctacatga
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| Protein seq | MAYHHLLLSPPHPHPARLSLVTSRRRPRAGRVAAACSPSPSALAAGRRAVLLVGVSVLPLLRLRDAAFAAAAARPPSTTTVDLVTDRMDTVKTEETQPEEPSAEESLAEVKVPPAVNPLAGLLNAIAVIASGVFAGLFGASQREKEALQSTVSTMEIKLAENEAAMSMLRENYEKQIWNEHAEQKKQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSSIAQAEDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIRELSSSLSSKEEDYQKLQLIYNETEASLEYADSKIEQLEEGYSATKDDLNSKMCSIDSLNKEVQTLYTAQTGAEEKISELKKQYADLAAASELRASCDSELLIEKDNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEAHKKLSEILQSTEGALTDYRDKVFNLSEELNRVKISNQQLITQITKLTDESNIAKQVLTNKIAEAEAVSKVLSDELASVRDVLQKTQEKLDVTSNQLVSTMEAREDLNKELLDAYKKLESATDELVRERKINATLNRELEALVEQSIVESEARQALQADLDEVTNSQKEVDESTQFLSERLDSANSRISSIEQEKEMLSEALEQQKRSTMEAQKDMEDAQNLMRMIGTERENFETMSKKLEEELATAKGEILRLRRQISASGYLRTELAETSVTSNTSQPEQDVNDPDQSSNNTGAGDTRSPTRIYRRRKTKRAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.813305 | 2.164820 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0180400 | RBH | 0.192391 | 0.000000 | 1.410678 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08790 | RBH | 0.130105 | 0.000000 | 0.363136 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0180400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005500 | RBH | 0.340610 | 3.481904 | 3.139212 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005470 | RBH | 0.0 | 0.335641 | 0.803859 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005870 | RBH | 4.342639 | 0.559595 | 10.261185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005450 | RBH | 0.0 | 0.154628 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005560 | RBH | 1.406115 | 1.542654 | 5.566833 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0073000 | RBH | 3.211071 | 9.141304 | 17.7436265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005330 | RBH | 0.0 | 0.317339 | 0.272029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0074400 | RBH | 2.0387195 | 2.6657025 | 12.282868 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005470 | RBH | 0.242142 | 0.108928 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005400 | RBH | 0.000000 | 12.967686 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005480 | RBH | 0.0 | 10.727446 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005510 | RBH | 0.000000 | 0.469985 | 0.271452 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005520 | RBH | 0.0 | 6.718550 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005350 | RBH | 0.000000 | 1.755221 | 0.634098 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005570 | RBH | 0.0 | 16.331924 | 4.034025 |
