Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0005870 | OGI:01015040 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:4538782-4543558 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgatgtgtgaataattcagcacaagcacgtataggaaaaatattttctgtcatgttgaacctcaaaaaattatctgtacacatatttgaccctgatcctcaacttccaaaactcaaaatataggaatagctaatgaattggaagtttccactgcaacaaagaagcaaatagaaataatactaataatgttgcaaaggaagacagtataaaaaatgaagttatcattgatgactaaacaggaagcaatgaaagcagatgatttcctttcctatcaatctcccaagcacattcacgttgatgcaccaccttttcttctcctagtcgtcctctttgcagtatattgagacccagcagcaactttgctggtattctgattatcattcacaggctgctcgtctggagcctgactgacctctggagatgcatttgtgtttggaagagtttttgctttctgtgatctgcttgtactaatctgccttcttaggcgcaatatctcaccctttgctaacgccaactcctcttcaagatgtctagccctcatttcaaaactctccttctcagtctgaagcctagagataagattctgagcatcctcagtgttttcatgagcttcagttgtgatcttctgttgttcagcaagagcctttgataacatttctttctctgcttcaagagtgtccttcctagaattagtttcctctagctcctttgatagtgataatgcactcctgttcatctcgtctagtgactttgttgcttcatccaggtctgcttcaagagcttttcgtgcttcagaatccatctgtagttgtttcaccaaagcctcaagctccctattcaaagtagtgacagttttcctttcatcaacaagctcctgtgacgtggattccaacttcttgaacacatcgagcaattctttcttcaggttgtcacgagcttccacaatggatgcaagctcattagaagtggcttcaagttcttcctgtcccttgtgaaccatctccttaacagagacaagttcgtctgacagagctttagatactgattctacctctcctagtttgttagtaaggccctcttgcatttcattgaactcatcctggagtttagaaatttgcagcaccaggtcctggttcattctatttgcttcatcaagttccactgaaagtttggatacctcacttctggaatctgtcagtgcctcctctgtggattgaagtgattctcttaaacttttaactgcagcaacttcattctctagcattgcttttgttgcatccaattccttgttcagcgcagcgatgatctcacggtctttgctagaatcacttaatgcatcagagagttttccatcaagctgtttgatcatattatctttttctaatagtagctcagagttgcggctctctcttgcttcagaagaagccttcaggtctgtataatctttcgttaactcacttagcttttcctcagcttcattctttgcagagttcagtgcttgaagttcctcattcagtaaatcaattgaagatatcttagaagaaagatcatttctagttctatgaacctcttcctccagttgctgtattttagcttctgcaagttctagactctctttagtttggtcagagaaagagcacagattacggtagtctgcttcctttgacgaaagtaatgaactgagttccctgatgcgtatacccttattatcaatttcttggctaagcaaacttactttttcctgcaaaatgttgacatctcccaacttttccttcagtttggcttcaagaacatctttgtcatccccagcttgtgcaagactgctctctagtcgacgtatttcttccctaagctcctcagccagtgtcttctcccttctgaattcttcacttagcgaagttaccgtcttttttgttgaagacaactgatctaaaagagaggcttcctgctcctgaaacttcattgcttgcttcttttgtgctgtttgttgatccagcaatcttttctcgtagttttccctcatcaatgagattgctgcctcattttcagccagtttgctttccatctgaacaagttagcaaaatggatatgtcagctaatgtcctatattagcacatcattttttaaaaaggttttcaagtatgagaggtacatcaaatagttttggtagcctcttgcatataaatctgagttatattgtgctgtgagaacttaagcaacgcttgttttcctaaggggaaacatcatgacggaaaatgagttaaaactttttaagctcttcatgagttctatactttgttagttatcaggttataaacttgagggtgcacagattttctagataaaagaaaataaacaaaacacacaagcatatgtatgcaatcacggaatgtacaactctttaatgtgtatgcatgcaaagatggttacttcgtggaaatttgactatgcaaggatgtcatgggacacttcaaaagtagtaaaatagaaacagtagtaatggacactaattacaggtttgcagatgttttacagatgagacgacggattccagggccttcttttcctgttgagaagtgccatacagtccagcaagaacaccggaggcagcaactgcaattgcattcaaaagaccagaaagtggattcccaggagtttgttcttgcgtgacgggcagggatgattctggttgcaaagcttcaggtagaggagattcagcctgagtttccccaggctgaggttcatcaggcttttgaatatcctttgtctctacagagaaaaacaatataaactatttattccaagtttgtacaggatatttccaaattagtcctaatatgcaagcgccaacatgagatgacaggaaggcagcaccaacaaaatcaatccaaacaatatcacatgcccaggtcccaataccagtttacaaaagaaccatatagtaaatccaacacattccagtggttaagataggtcaaaagaactttgcaggtacacctcaaagtatttatgccagaaaacaaaaataatgcagcacatggtagtagacctcgacagggttcgctaacataatcatagaccccgtatttagtatgagctacttgtatgagggggaaattctgaccatcgacaatagcctcattaggtctacatatgacagtattacgtccaatcttgaaagttttgtagcaagtctgagcttgatgatctatccttgggaaatcaacccgctttcttctaataaatccttggggaaatgacatgccataaactgcgggaaaatgaagaaaaaatgacatatggtcacatgccataatcagactcaaaattcactgggataagttgtgaataatgagcatgcatgactccagtttgagactttgtcatcagaatgtgaaattaatttttattaaaacaacacacttccatgcaaataccagccaaattcagcttataaatttatcaaaacttcccttatccctagttccaaaatgcatagggaatccgcgtggtgtactcaggatgcctaacacatggaatggcaatcataaatcatccactgcacctcacatagtggatttgttccatttcaaaactggtcaacagaatgaaaatgaatttgtttgcacaaaacctatacaaaaggggtacaaagggtaagatgatatactgtaagtgtacagtttacttagatgagccatctacagccaagaccaccttcatgtaaaaatatcttactgcataaagcatttacaaactctttctaccttttgcaccagtacaaacgatcactgtgacattctaggtccattcttccatctgatagttccactctagtgctaattgaggtattaacatgtagaagtccatatagaatcacattcaacatgtgtatgtttgcagaaatagtctctgcttgtgggaattgtgctattccaacctcctaattcctttccatccatgcgtatccctgctcaaggaaagcgattgcgcatgtcccatgcatacataattgcttagcagcatttgttagcagatacattgtaaactcttccaccattagcctgaacagaaagttcagatttctcatgtggagctaaaacgtccatataatgcaacgctgtacgttagcagtaatctccatgactgaatccacaaaacaatctatacaattggacattacagaaaatttaaagcccaaccataaatgattcaaatcgcacacagatttcatatggtactccacaatgccagaccgaatagtatccaggctgggagaaacacaaaacgagaacggaattcaaccaactcctggaaaggagaatggcactcacccgttgcgagatccccgctgttaggcgtggccaccgcggccgccgccgcggcttccctggcgcggaggagcgggagcgccgagacgccgaggagcacgccccgccgcgccagcacgtacgcccccgccgccgagtgggatgggccggcatcaccggacgacgacgacgacgacgccgagctcgacgcgacgatggccgcgcctctccgcgcgcggcctcctcggcggcaccggaacgcgagcggccgcggcgccggcgacggcgcgaggaggaggtaccccatcccgtcccccacgacgcgacaaccccaaaaccctagccccccctcctcgcggtggcgctcgccttcgagctcggaagcggaagcccgcagtgaaaatggcggaggtgaggtgaggattaggcgatggcgaaggcggaggcggagacggcatcaccgcgtc
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| CDS seq | atggggtacctcctcctcgcgccgtcgccggcgccgcggccgctcgcgttccggtgccgccgaggaggccgcgcgcggagaggcgcggccatcgtcgcgtcgagctcggcgtcgtcgtcgtcgtcgtccggtgatgccggcccatcccactcggcggcgggggcgtacgtgctggcgcggcggggcgtgctcctcggcgtctcggcgctcccgctcctccgcgccagggaagccgcggcggcggccgcggtggccacgcctaacagcggggatctcgcaacggagacaaaggatattcaaaagcctgatgaacctcagcctggggaaactcaggctgaatctcctctacctgaagctttgcaaccagaatcatccctgcccgtcacgcaagaacaaactcctgggaatccactttctggtcttttgaatgcaattgcagttgctgcctccggtgttcttgctggactgtatggcacttctcaacaggaaaagaaggccctggaatccgtcgtctcatctatggaaagcaaactggctgaaaatgaggcagcaatctcattgatgagggaaaactacgagaaaagattgctggatcaacaaacagcacaaaagaagcaagcaatgaagtttcaggagcaggaagcctctcttttagatcagttgtcttcaacaaaaaagacggtaacttcgctaagtgaagaattcagaagggagaagacactggctgaggagcttagggaagaaatacgtcgactagagagcagtcttgcacaagctggggatgacaaagatgttcttgaagccaaactgaaggaaaagttgggagatgtcaacattttgcaggaaaaagtaagtttgcttagccaagaaattgataataagggtatacgcatcagggaactcagttcattactttcgtcaaaggaagcagactaccgtaatctgtgctctttctctgaccaaactaaagagagtctagaacttgcagaagctaaaatacagcaactggaggaagaggttcatagaactagaaatgatctttcttctaagatatcttcaattgatttactgaatgaggaacttcaagcactgaactctgcaaagaatgaagctgaggaaaagctaagtgagttaacgaaagattatacagacctgaaggcttcttctgaagcaagagagagccgcaactctgagctactattagaaaaagataatatgatcaaacagcttgatggaaaactctctgatgcattaagtgattctagcaaagaccgtgagatcatcgctgcgctgaacaaggaattggatgcaacaaaagcaatgctagagaatgaagttgctgcagttaaaagtttaagagaatcacttcaatccacagaggaggcactgacagattccagaagtgaggtatccaaactttcagtggaacttgatgaagcaaatagaatgaaccaggacctggtgctgcaaatttctaaactccaggatgagttcaatgaaatgcaagagggccttactaacaaactaggagaggtagaatcagtatctaaagctctgtcagacgaacttgtctctgttaaggagatggttcacaagggacaggaagaacttgaagccacttctaatgagcttgcatccattgtggaagctcgtgacaacctgaagaaagaattgctcgatgtgttcaagaagttggaatccacgtcacaggagcttgttgatgaaaggaaaactgtcactactttgaatagggagcttgaggctttggtgaaacaactacagatggattctgaagcacgaaaagctcttgaagcagacctggatgaagcaacaaagtcactagacgagatgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggacactcttgaagcagagaaagaaatgttatcaaaggctcttgctgaacaacagaagatcacaactgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgagaaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggtgagatattgcgcctaagaaggcagattagtacaagcagatcacagaaagcaaaaactcttccaaacacaaatgcatctccagaggtcagtcaggctccagacgagcagcctgtgaatgataatcagaataccagcaaagttgctgctgggtctcaatatactgcaaagaggacgactaggagaagaaaaggtggtgcatcaacgtga
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| Protein seq | MGYLLLAPSPAPRPLAFRCRRGGRARRGAAIVASSSASSSSSSGDAGPSHSAAGAYVLARRGVLLGVSALPLLRAREAAAAAAVATPNSGDLATETKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAIAVAASGVLAGLYGTSQQEKKALESVVSSMESKLAENEAAISLMRENYEKRLLDQQTAQKKQAMKFQEQEASLLDQLSSTKKTVTSLSEEFRREKTLAEELREEIRRLESSLAQAGDDKDVLEAKLKEKLGDVNILQEKVSLLSQEIDNKGIRIRELSSLLSSKEADYRNLCSFSDQTKESLELAEAKIQQLEEEVHRTRNDLSSKISSIDLLNEELQALNSAKNEAEEKLSELTKDYTDLKASSEARESRNSELLLEKDNMIKQLDGKLSDALSDSSKDREIIAALNKELDATKAMLENEVAAVKSLRESLQSTEEALTDSRSEVSKLSVELDEANRMNQDLVLQISKLQDEFNEMQEGLTNKLGEVESVSKALSDELVSVKEMVHKGQEELEATSNELASIVEARDNLKKELLDVFKKLESTSQELVDERKTVTTLNRELEALVKQLQMDSEARKALEADLDEATKSLDEMNRSALSLSKELEETNSRKDTLEAEKEMLSKALAEQQKITTEAHENTEDAQNLISRLQTEKESFEMRARHLEEELALAKGEILRLRRQISTSRSQKAKTLPNTNASPEVSQAPDEQPVNDNQNTSKVAAGSQYTAKRTTRRRKGGAST |
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| Function | MAR-binding filament-like protein 1-1 [UniProtKB/Swiss-Prot:Q9M7J4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0005870 | OsCMeo_01g0005870.01 | Chr01 | 4538782 | 4543558 | - | NAM | ||
| CDS seq | atggggtacctcctcctcgcgccgtcgccggcgccgcggccgctcgcgttccggtgccgccgaggaggccgcgcgcggagaggcgcggccatcgtcgcgtcgagctcggcgtcgtcgtcgtcgtcgtccggtgatgccggcccatcccactcggcggcgggggcgtacgtgctggcgcggcggggcgtgctcctcggcgtctcggcgctcccgctcctccgcgccagggaagccgcggcggcggccgcggtggccacgcctaacagcggggatctcgcaacggagacaaaggatattcaaaagcctgatgaacctcagcctggggaaactcaggctgaatctcctctacctgaagctttgcaaccagaatcatccctgcccgtcacgcaagaacaaactcctgggaatccactttctggtcttttgaatgcaattgcagttgctgcctccggtgttcttgctggactgtatggcacttctcaacaggaaaagaaggccctggaatccgtcgtctcatctatggaaagcaaactggctgaaaatgaggcagcaatctcattgatgagggaaaactacgagaaaagattgctggatcaacaaacagcacaaaagaagcaagcaatgaagtttcaggagcaggaagcctctcttttagatcagttgtcttcaacaaaaaagacggtaacttcgctaagtgaagaattcagaagggagaagacactggctgaggagcttagggaagaaatacgtcgactagagagcagtcttgcacaagctggggatgacaaagatgttcttgaagccaaactgaaggaaaagttgggagatgtcaacattttgcaggaaaaagtaagtttgcttagccaagaaattgataataagggtatacgcatcagggaactcagttcattactttcgtcaaaggaagcagactaccgtaatctgtgctctttctctgaccaaactaaagagagtctagaacttgcagaagctaaaatacagcaactggaggaagaggttcatagaactagaaatgatctttcttctaagatatcttcaattgatttactgaatgaggaacttcaagcactgaactctgcaaagaatgaagctgaggaaaagctaagtgagttaacgaaagattatacagacctgaaggcttcttctgaagcaagagagagccgcaactctgagctactattagaaaaagataatatgatcaaacagcttgatggaaaactctctgatgcattaagtgattctagcaaagaccgtgagatcatcgctgcgctgaacaaggaattggatgcaacaaaagcaatgctagagaatgaagttgctgcagttaaaagtttaagagaatcacttcaatccacagaggaggcactgacagattccagaagtgaggtatccaaactttcagtggaacttgatgaagcaaatagaatgaaccaggacctggtgctgcaaatttctaaactccaggatgagttcaatgaaatgcaagagggccttactaacaaactaggagaggtagaatcagtatctaaagctctgtcagacgaacttgtctctgttaaggagatggttcacaagggacaggaagaacttgaagccacttctaatgagcttgcatccattgtggaagctcgtgacaacctgaagaaagaattgctcgatgtgttcaagaagttggaatccacgtcacaggagcttgttgatgaaaggaaaactgtcactactttgaatagggagcttgaggctttggtgaaacaactacagatggattctgaagcacgaaaagctcttgaagcagacctggatgaagcaacaaagtcactagacgagatgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggacactcttgaagcagagaaagaaatgttatcaaaggctcttgctgaacaacagaagatcacaactgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgagaaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggtgagatattgcgcctaagaaggcagattagtacaagcagatcacagaaagcaaaaactcttccaaacacaaatgcatctccagaggtcagtcaggctccagacgagcagcctgtgaatgataatcagaataccagcaaagttgctgctgggtctcaatatactgcaaagaggacgactaggagaagaaaaggtggtgcatcaacgtga
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| Protein seq | MGYLLLAPSPAPRPLAFRCRRGGRARRGAAIVASSSASSSSSSGDAGPSHSAAGAYVLARRGVLLGVSALPLLRAREAAAAAAVATPNSGDLATETKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAIAVAASGVLAGLYGTSQQEKKALESVVSSMESKLAENEAAISLMRENYEKRLLDQQTAQKKQAMKFQEQEASLLDQLSSTKKTVTSLSEEFRREKTLAEELREEIRRLESSLAQAGDDKDVLEAKLKEKLGDVNILQEKVSLLSQEIDNKGIRIRELSSLLSSKEADYRNLCSFSDQTKESLELAEAKIQQLEEEVHRTRNDLSSKISSIDLLNEELQALNSAKNEAEEKLSELTKDYTDLKASSEARESRNSELLLEKDNMIKQLDGKLSDALSDSSKDREIIAALNKELDATKAMLENEVAAVKSLRESLQSTEEALTDSRSEVSKLSVELDEANRMNQDLVLQISKLQDEFNEMQEGLTNKLGEVESVSKALSDELVSVKEMVHKGQEELEATSNELASIVEARDNLKKELLDVFKKLESTSQELVDERKTVTTLNRELEALVKQLQMDSEARKALEADLDEATKSLDEMNRSALSLSKELEETNSRKDTLEAEKEMLSKALAEQQKITTEAHENTEDAQNLISRLQTEKESFEMRARHLEEELALAKGEILRLRRQISTSRSQKAKTLPNTNASPEVSQAPDEQPVNDNQNTSKVAAGSQYTAKRTTRRRKGGAST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.342639 | 0.559595 | 10.261185 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0180300 | RBH | 6.824969 | 4.064632 | 4.495787 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08510 | RBH | 3.770644 | 1.790517 | 1.065521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0180300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005910 | RBH | 1.028815 | 0.807703 | 6.508443 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005580 | RBH | 0.561272 | 0.396244 | 2.755121 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005370 | RBH | 0.0 | 1.813305 | 2.164820 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005500 | RBH | 0.506436 | 0.082297 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005700 | RBH | 2.579396 | 2.413909 | 10.059631 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0073100 | RBH | 8.671996 | 4.4842955 | 8.9712985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005650 | RBH | 1.184474 | 0.088454 | 1.079654 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0073200 | RBH | 21.9346655 | 7.567046 | 8.902138 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005470 | RBH | 0.295120 | 0.089542 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005650 | RBH | 0.537065 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005710 | RBH | 3.473876 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005650 | RBH | 3.577854 | 0.000000 | 1.863203 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005630 | RBH | 1.148094 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005670 | RBH | 0.487827 | 1.634014 | 2.102556 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005550 | RBH | 1.394894 | 0.0 | 5.844050 |
