Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0027480 | OGI:04092930 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:31525454-31528235 | ||||||||
| Gene Symbol | PIPR1, OsPiPR1, RGAd, XA1, Xa1(Xe), Xe, Xa1, Xa-1, RGAf, RGAg | ||||||||||
| DNA seq | atggaggaggtggaagccggtttgctggagggcgggatcgggtggctggcggagaccatcctcgacaacctggacgccgatgagcttggtgagtggattcgtcagattgggctcgccgctgacaccgagaagctacgggctgagatcgagagggtggatggggtggtcgctgccgtgaaggggagggcgatcggaaacaggtcgctggcccgatcgctccgtcgtctcagggagctgctctacgacgccgacgacgcgatcgacgagctcgactaccacaggctcgactaccacaggctccagcatcaggtccaacgaggaggtaaagcatttatgcaagacgtacgcatccattgcagaaaatctaattgttggattgtattacatcgactcacccatggggttatatataggagtgtacgggggatagagacttagagtataatacaagagtaaaattatctttagtattctatctctagaactataggactctagaattacattttatctttataatttgtatttaactcttatctctaaccgatatatttatacttctaacaccatgtaccacggcttacgttgatttccagatcccttcctcttttacatggcatagtttgttttttggttcagatgcatggcacggcgaccctgatgaaagcgcggatgggcatggagcagagcaaacagagatacctcggaggggcaaagttggtgaagcgagtggcagcggtggcaaaagacggtccgggatatggcagcactttgagatcgtggaaaataatgcgaaagccaagtgtgtcggctgtggcacggtggtcaagtgcggctccgacaatgggacttcggttttgcataatcaccgcaaaagtggcaaatgtaaaaggacacgtggagcaactgatcaaccgccaaaccctccgaggtagtagtagtagtacttaaaaaaaaactcgaattaatcaattactgaaaacacaaatacttctcctaaaacacagatcatgttcttcttgtagtgccagcgagggtggagcaaattcatctgcagctggtaattcagtcggcagaaaaaggatgagagccgagggtgcatcagcagacaacgtggctgctagtacgcacccttggaacaagactgaactttccaacacgatccaacatatgactcatcagttacaagaggccatgaatgaggttatgaggctatgcggatctgcaagttcatatcagagtcgtcagagtacacctccggccacaaatgcaactacatcgtcttatcttcttgagcccaaaatatatggcagggatgcagacatggaatccataaaaaatctgatcatgagaaataaatccaatggtataaccgtcctgccgattgtaggcatcggagggatagggaaaaccactctgacccaacgtgtctacaatgatccggaaatcggaaatcagtatgagatcaagaagatatgggtccatgtatctgataaatttgatgtggttaggatcacaagggagattttagagtatgtctccaaccagagttatcaaggaataagcaactttaatatgcttcagcaggatcttgagaaacacatgaaatctaagaagttcctaattgttttggatgatgtctgggatgtcactactgactgttggaacaaactactggctcctataagagctaatcatgttaatctgtcacaggaaaaagtgataggtaacactatgatcattgtgacaactcgaaaacacactactgccaagctttgtggaacggtaggatcaattaatttggaaggtctgaaagatgatgacatatggtcactattgaaagcatatgcttttggtagtgacaaacacgacaataatccaattttacagaatcttgggaggaaaatagctaaggagctaaaaggcagcccattggcggcaaaaactgcgggctccctattacgaaggaatcttaccgtagatcattggagcagcattatagagaacaaagaatggcaatctctgcagcatactgatggtattatgcatgcattgaagttcagttatgatcatctacccagccacttacagcaatgtttctcttattgttctcttttccccaaaggttactcttttagtgaagaacaattgatacaaatatggattgctcaagggtttgtggaaaaatccagtgagaatttggagaatttggagcagaaaggacgggaatatctagctgaattggtgaactctggtttccttcagcaaattgaaagtaagtgggcttcatcagaagatattgttctgcaagatcttatgcatgatttagcacgaatggtttcaaaaactgaatgtgcaactatagatggatcagagtgtgaaaaattagcgccaagtgtacgccatttgtcaattgtaactgactctgcgtactctgaggatccacatggaaacatatctcgtaatgaagaatttgagaaaagattgctgaaagttatgtcaaggagtaagttgaggacactggtgttaattgggcaacatgactctctattcttccaatctttccaaaatcttttcaaggaggcacagcatttgcgattgttgcagatgagttcgacatatgctaattttggttcttttctttccaatctggtaaattatatacatctccggtatctgagacttgagaacaaagagtgcgaagtagctttgccccaagctctccacaagtgttaccatcttctagtagtagattgtcacggcctgaactaatcccgaccgg
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| CDS seq | atggaggaggtggaagccggtttgctggagggcgggatcgggtggctggcggagaccatcctcgacaacctggacgccgatgagcttggtgagtggattcgtcagattgggctcgccgctgacaccgagaagctacgggctgagatcgagagggtggatggggtggtcgctgccgtgaaggggagggcgatcggaaacaggtcgctggcccgatcgctccgtcatgcatggcacggcgaccctgatgaaagcgcggatgggcatggagcagagcaaacagagatacctcggaggggcaaagttggtgaagcgagtggcagcggtggcaaaagacggtccgggatatggcagcactttgagatcgtggaaaataatgcgaaagccaagtgtgtcggctgtggcacggtggtcaagtgcggctccgacaatgggacttcggttttgcataatcaccgcaaaagtggcaaatgtaaaaggacacgtggagcaactgatcaaccgccaaaccctccgagtgccagcgagggtggagcaaattcatctgcagctggtaattcagtcggcagaaaaaggatgagagccgagggtgcatcagcagacaacgtggctgctagtacgcacccttggaacaagactgaactttccaacacgatccaacatatgactcatcagttacaagaggccatgaatgaggttatgaggctatgcggatctgcaagttcatatcagagtcgtcagagtacacctccggccacaaatgcaactacatcgtcttatcttcttgagcccaaaatatatggcagggatgcagacatggaatccataaaaaatctgatcatgagaaataaatccaatggtataaccgtcctgccgattgtaggcatcggagggatagggaaaaccactctgacccaacgtgtctacaatgatccggaaatcggaaatcagtatgagatcaagaagatatgggtccatgtatctgataaatttgatgtggttaggatcacaagggagattttagagtatgtctccaaccagagttatcaaggaataagcaactttaatatgcttcagcaggatcttgagaaacacatgaaatctaagaagttcctaattgttttggatgatgtctgggatgtcactactgactgttggaacaaactactggctcctataagagctaatcatgttaatctgtcacaggaaaaagtgataggtaacactatgatcattgtgacaactcgaaaacacactactgccaagctttgtggaacggtaggatcaattaatttggaaggtctgaaagatgatgacatatggtcactattgaaagcatatgcttttggtagtgacaaacacgacaataatccaattttacagaatcttgggaggaaaatagctaaggagctaaaaggcagcccattggcggcaaaaactgcgggctccctattacgaaggaatcttaccgtagatcattggagcagcattatagagaacaaagaatggcaatctctgcagcatactgatggtattatgcatgcattgaagttcagttatgatcatctacccagccacttacagcaatgtttctcttattgttctcttttccccaaaggttactcttttagtgaagaacaattgatacaaatatggattgctcaagggtttgtggaaaaatccagtgagaatttggagaatttggagcagaaaggacgggaatatctagctgaattggtgaactctggtttccttcagcaaattgaaagtaagtgggcttcatcagaagatattgttctgcaagatcttatgcatgatttagcacgaatggtttcaaaaactgaatgtgcaactatagatggatcagagtgtgaaaaattagcgccaagtgtacgccatttgtcaattgtaactgactctgcgtactctgaggatccacatggaaacatatctcgtaatgaagaatttgagaaaagattgctgaaagttatgtcaaggagtaagttgaggacactggtgttaattgggcaacatgactctctattcttccaatctttccaaaatcttttcaaggaggcacagcatttgcgattgttgcagatgagttcgacatatgctaattttggttcttttctttccaatctggtaaattatatacatctccggtatctgagacttgagaacaaagagtgcgaagtagctttgccccaagctctccacaagtgttaccatcttctagtagtagattgtcacggcctgaactaa
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| Protein seq | MEEVEAGLLEGGIGWLAETILDNLDADELGEWIRQIGLAADTEKLRAEIERVDGVVAAVKGRAIGNRSLARSLRHAWHGDPDESADGHGAEQTEIPRRGKVGEASGSGGKRRSGIWQHFEIVENNAKAKCVGCGTVVKCGSDNGTSVLHNHRKSGKCKRTRGATDQPPNPPSASEGGANSSAAGNSVGRKRMRAEGASADNVAASTHPWNKTELSNTIQHMTHQLQEAMNEVMRLCGSASSYQSRQSTPPATNATTSSYLLEPKIYGRDADMESIKNLIMRNKSNGITVLPIVGIGGIGKTTLTQRVYNDPEIGNQYEIKKIWVHVSDKFDVVRITREILEYVSNQSYQGISNFNMLQQDLEKHMKSKKFLIVLDDVWDVTTDCWNKLLAPIRANHVNLSQEKVIGNTMIIVTTRKHTTAKLCGTVGSINLEGLKDDDIWSLLKAYAFGSDKHDNNPILQNLGRKIAKELKGSPLAAKTAGSLLRRNLTVDHWSSIIENKEWQSLQHTDGIMHALKFSYDHLPSHLQQCFSYCSLFPKGYSFSEEQLIQIWIAQGFVEKSSENLENLEQKGREYLAELVNSGFLQQIESKWASSEDIVLQDLMHDLARMVSKTECATIDGSECEKLAPSVRHLSIVTDSAYSEDPHGNISRNEEFEKRLLKVMSRSKLRTLVLIGQHDSLFFQSFQNLFKEAQHLRLLQMSSTYANFGSFLSNLVNYIHLRYLRLENKECEVALPQALHKCYHLLVVDCHGLN |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0027480 | OsCMeo_04g0027480.01 | Chr04 | 31525454 | 31528235 | + | NAM | ||
| CDS seq | atggaggaggtggaagccggtttgctggagggcgggatcgggtggctggcggagaccatcctcgacaacctggacgccgatgagcttggtgagtggattcgtcagattgggctcgccgctgacaccgagaagctacgggctgagatcgagagggtggatggggtggtcgctgccgtgaaggggagggcgatcggaaacaggtcgctggcccgatcgctccgtcatgcatggcacggcgaccctgatgaaagcgcggatgggcatggagcagagcaaacagagatacctcggaggggcaaagttggtgaagcgagtggcagcggtggcaaaagacggtccgggatatggcagcactttgagatcgtggaaaataatgcgaaagccaagtgtgtcggctgtggcacggtggtcaagtgcggctccgacaatgggacttcggttttgcataatcaccgcaaaagtggcaaatgtaaaaggacacgtggagcaactgatcaaccgccaaaccctccgagtgccagcgagggtggagcaaattcatctgcagctggtaattcagtcggcagaaaaaggatgagagccgagggtgcatcagcagacaacgtggctgctagtacgcacccttggaacaagactgaactttccaacacgatccaacatatgactcatcagttacaagaggccatgaatgaggttatgaggctatgcggatctgcaagttcatatcagagtcgtcagagtacacctccggccacaaatgcaactacatcgtcttatcttcttgagcccaaaatatatggcagggatgcagacatggaatccataaaaaatctgatcatgagaaataaatccaatggtataaccgtcctgccgattgtaggcatcggagggatagggaaaaccactctgacccaacgtgtctacaatgatccggaaatcggaaatcagtatgagatcaagaagatatgggtccatgtatctgataaatttgatgtggttaggatcacaagggagattttagagtatgtctccaaccagagttatcaaggaataagcaactttaatatgcttcagcaggatcttgagaaacacatgaaatctaagaagttcctaattgttttggatgatgtctgggatgtcactactgactgttggaacaaactactggctcctataagagctaatcatgttaatctgtcacaggaaaaagtgataggtaacactatgatcattgtgacaactcgaaaacacactactgccaagctttgtggaacggtaggatcaattaatttggaaggtctgaaagatgatgacatatggtcactattgaaagcatatgcttttggtagtgacaaacacgacaataatccaattttacagaatcttgggaggaaaatagctaaggagctaaaaggcagcccattggcggcaaaaactgcgggctccctattacgaaggaatcttaccgtagatcattggagcagcattatagagaacaaagaatggcaatctctgcagcatactgatggtattatgcatgcattgaagttcagttatgatcatctacccagccacttacagcaatgtttctcttattgttctcttttccccaaaggttactcttttagtgaagaacaattgatacaaatatggattgctcaagggtttgtggaaaaatccagtgagaatttggagaatttggagcagaaaggacgggaatatctagctgaattggtgaactctggtttccttcagcaaattgaaagtaagtgggcttcatcagaagatattgttctgcaagatcttatgcatgatttagcacgaatggtttcaaaaactgaatgtgcaactatagatggatcagagtgtgaaaaattagcgccaagtgtacgccatttgtcaattgtaactgactctgcgtactctgaggatccacatggaaacatatctcgtaatgaagaatttgagaaaagattgctgaaagttatgtcaaggagtaagttgaggacactggtgttaattgggcaacatgactctctattcttccaatctttccaaaatcttttcaaggaggcacagcatttgcgattgttgcagatgagttcgacatatgctaattttggttcttttctttccaatctggtaaattatatacatctccggtatctgagacttgagaacaaagagtgcgaagtagctttgccccaagctctccacaagtgttaccatcttctagtagtagattgtcacggcctgaactaa
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| Protein seq | MEEVEAGLLEGGIGWLAETILDNLDADELGEWIRQIGLAADTEKLRAEIERVDGVVAAVKGRAIGNRSLARSLRHAWHGDPDESADGHGAEQTEIPRRGKVGEASGSGGKRRSGIWQHFEIVENNAKAKCVGCGTVVKCGSDNGTSVLHNHRKSGKCKRTRGATDQPPNPPSASEGGANSSAAGNSVGRKRMRAEGASADNVAASTHPWNKTELSNTIQHMTHQLQEAMNEVMRLCGSASSYQSRQSTPPATNATTSSYLLEPKIYGRDADMESIKNLIMRNKSNGITVLPIVGIGGIGKTTLTQRVYNDPEIGNQYEIKKIWVHVSDKFDVVRITREILEYVSNQSYQGISNFNMLQQDLEKHMKSKKFLIVLDDVWDVTTDCWNKLLAPIRANHVNLSQEKVIGNTMIIVTTRKHTTAKLCGTVGSINLEGLKDDDIWSLLKAYAFGSDKHDNNPILQNLGRKIAKELKGSPLAAKTAGSLLRRNLTVDHWSSIIENKEWQSLQHTDGIMHALKFSYDHLPSHLQQCFSYCSLFPKGYSFSEEQLIQIWIAQGFVEKSSENLENLEQKGREYLAELVNSGFLQQIESKWASSEDIVLQDLMHDLARMVSKTECATIDGSECEKLAPSVRHLSIVTDSAYSEDPHGNISRNEEFEKRLLKVMSRSKLRTLVLIGQHDSLFFQSFQNLFKEAQHLRLLQMSSTYANFGSFLSNLVNYIHLRYLRLENKECEVALPQALHKCYHLLVVDCHGLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0621500 | SBH | 0.234283 | 0.758905 | 0.758510 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53120 | RBH | 1.143008 | 1.394336 | 0.197501 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0620950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027000 | RBH | 0.0 | 0.0 | 1.115638 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027730 | SBH | 0.032582 | 0.091726 | 0.118973 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027540 | SBH | 0.0 | 0.685567 | 0.152697 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027430 | SBH | 0.803315 | 0.589062 | 0.756611 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0498100 | RBH | 1.1873085 | 3.438363 | 0.2193595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026250 | SBH | 0.000000 | 0.066579 | 0.089628 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0503700 | SBH | 0.9564555 | 3.0302275 | 0.485191 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026730 | RBH | 0.235404 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026600 | SBH | 0.466128 | 0.514007 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026620 | RBH | 3.561647 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027000 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027290 | SBH | 0.118455 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026470 | RBH | 0.331817 | 0.000000 | 0.035477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026300 | RBH | 0.000000 | 1.734133 | 0.0 |
