Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0014390 | OGI:04045500 | 9/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:21352854-21353978 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagctccccgccgcccgcgccgccatcgatagcttcaccgagccggccgccacgagaggagggaggagggaggggaggtgaagggggaggccgagagagccgcggcgcgggaagccgtaagataaatgagaacaaaaaccggtttcggtaaaatgccatcgttaaaaataggattcactcgaataccgttaaaaatggaatttgtttgaatgcacactatcaaggctgtgggtattcgctacaatgctattttcgttgtttcttgaatttgtaaaacatttgtaaaatttgttaatccaatgcaagtttggtgaactgtactatttatcttatttgtcttttttatatctcgatgtatatgttaagattgaacctaaaattttatgaaaatggtatataaatatggtataaatgttgtcaatttttttttgaaattctcatatctatttggatagtttttaaacaaacgaggaaatgtcccctcgaaagatcgcctgcgaaatagcaaaggcggaaatagtttccctaatatcatcatgttccaagaaacatcattcctttcaggcatgagctccctggcctcagcgaccctaccgcaacaagcgtagccggtgaagagtgcagcccacgagacatagttcctcaccggtattgcgtcgaacaccatgcaggcttcagcaagcattcggttcctgatgagtccagtttagggttcactaaaccattttgggtggcgttaccgatatcccacggtaaagcggttattgcggtaagccgcaaggttactgtaaaaactgtgtggttaccgcgaggattaccgtagttttaagaactgagaaggctatcgcacgacatacatgttaaccatgttataaagcctccaaagaccgtgcagttccatgtgaacacgttccgttccgacatttcatcgaatactcggcgtgcggtggcaactttgcccgtgcggtactcgttgattgtggtattcaatcggaaaactttgctggcatgtcattgcggaggcggtggcttaggcccgagatagtagaagtagtggagtagactggaaatttcgtgacgtctgcagcggaatggttgcgaaggttctggatggttcccaccat
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| CDS seq | atggtgggaaccatccagaaccttcgcaaccattccgctgcagacgtcacgaaatttccagtctactccactacttctactatctcgggcctaagccaccgcctccgcaatgacatgccagcaaagaaccgaatgcttgctgaagcctgcatggtgttcgacgcaataccggtgaggaactatgtctcgtgggctgcactcttcaccggctacgcttgttgcggtagggtcgctgaggccagggagctcatgcctgaaaggaatgatctatcgatggcggcgcgggcggcggggagctaa |
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| Protein seq | MVGTIQNLRNHSAADVTKFPVYSTTSTISGLSHRLRNDMPAKNRMLAEACMVFDAIPVRNYVSWAALFTGYACCGRVAEARELMPERNDLSMAARAAGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0014390 | OsCMeo_04g0014390.01 | Chr04 | 21352854 | 21353978 | - | NAM | ||
| CDS seq | atggtgggaaccatccagaaccttcgcaaccattccgctgcagacgtcacgaaatttccagtctactccactacttctactatctcgggcctaagccaccgcctccgcaatgacatgccagcaaagaaccgaatgcttgctgaagcctgcatggtgttcgacgcaataccggtgaggaactatgtctcgtgggctgcactcttcaccggctacgcttgttgcggtagggtcgctgaggccagggagctcatgcctgaaaggaatgatctatcgatggcggcgcgggcggcggggagctaa
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| Protein seq | MVGTIQNLRNHSAADVTKFPVYSTTSTISGLSHRLRNDMPAKNRMLAEACMVFDAIPVRNYVSWAALFTGYACCGRVAEARELMPERNDLSMAARAAGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0432800 | SBH | 0.233924 | 0.126552 | 0.423139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35305 | SBH | 0.204456 | 0.085568 | 0.120697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0432800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013770 | SBH | 3.962089 | 197.885071 | 20.479073 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014620 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014270 | SBH | 24.092354 | 285.535187 | 85.981483 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0337200 | SBH | 3.446212 | 6.8382955 | 3.7606095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013190 | SBH | 0.0 | 0.0 | 0.055317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0333200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013740 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013520 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013490 | SBH | 0.0 | 2.837857 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014060 | SBH | 0.082732 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014300 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013370 | SBH | 0.0 | 0.0 | 0.116021 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013390 | SBH | 0.000000 | 3.216880 | 0.674951 |
