Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0007640 | OGI:04045990 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:13064546-13077408 | ||||||||
| Gene Symbol | NPH1B, PHOT2, OsPHOT2, OsNPH1b | ||||||||||
| DNA seq | ttagctttattgcaaaaaaaaaaagaagacaaagaaccttcaaaactttctaaaatatattataaacactactactttattgaatcatctccaagaaaagagtataagctttacaagaatatatcctatttatgtgaagtactaagatctttacctaaccaaaagaataatcatgtacacgattttgaggcagctcagactgaaaacactcaacaatgctaacatcacatgaagcctcttattactatacaggaaaaagaactgctccagtttgatctaccctgcaaaaatcaatacaatcagtctaccaattgccaacaaacatagttaaaacataacgtctgcaaagaaaggaaggaaggaacaggagagaaaacggtcatagaaattcccgatcgaccgagcgccgtttccgtataagggataccgtttctgaccgtaccgtttttggctatcttaaaattttttttctaatttctttctgcatcgtattaatatcgatattgagtagttaaaatgataaatatggtcaattaccggccgatcgagcatcgtttctgaagagatgctaccgattccgatcgttttcgaccgttttcacccctaaataggacgaccttgttctatctaaataaaatggtaataagctctccccctatatggactagaacacttcaaagttgcctcaccttaaaatgtatcaagatttaggggaacatcttcatcaggcttcgcttttggttgagtttccttgccaattagtttcagaggaacatctagttcaggggggctctgcacatatagttatttagataatcagtgatgcactaaacaaactatctttgtcgaaatgtcttgatgctcgaaacattcaaagtaccatgcaacgtatgagtggccaattgatgtcttgaaaaaaggaatgttgcttgatgtcatttgcaccagcatttgaacctatacgatttgaaggatctctctgaagtaatccatggattaattgctttgctgcaagactaacctggagaatcatagtgatattaataaatgagaacaaatgaaaactaaaatacaataacgaagtgtaagataggcataaacattttcttatctaacacatgctaacacatacccttaacatgatatcttacaggcttgctggacagattgtaaattggactcaacctttgtagttgcaaattgaatacagtatgcaaaaaatattggcctgcatgacaggaaacttcactggccatttctctaaaaaagaagttcttaccggaatgctactgggaaatgtaaggtctttgtgcagtatgttataaaatgtctttttcctgttctttcctcggaaaggtgtacgcccatacagcatctcatacaatagaattcctatagcatgggaattgatgttagctggatgtcatcttattattagcataatgcatatcaaacaatataataatgccatatcaaacaagttctcatggttaggtacttaggtgtacctgaaaacacatatctagtacttacacatcttataattatctagagagactagggatgtattggtgtggtagatacatatacagatctcagaaataaacacatacggagggcagtgtaccttcgggtgcttctaggcatttgacatctaagcagcatggttcaattgacacatggagaatttggataggttggagtcagcacataaacccacatgttctaatcatagcacctaccggtaccttttacacggaggccacttccatggaagggctaggcatgagaggatttttagaagggatattacaccattcaattttatgtttgttttgatccctgttatctagttaaactgactaacctacttaatgtgatgtaaattaaaaaagtgtgatatagatcagttatagcaggcaaaagtttgctgcagtgcaacttgtgacatgagttttgtttaattatgcatagcagtgtagcacaaaacaattaacttaaccgctaattatttagtcaaagtggtaatatggactattctctgggtggaaacccatgttcaaaatcttgtttgaatggcacatggattattatgaataatttgatgagattttagttgaacctcaaacatcttttaggtgattgctataagactataccaactaccaagaagatcgaataaataaaactaactcttttaatccattctgtgcaattcttgtaatcaactagttcataagatgacccaaaaaaatatattaggttattgcttaccgagagcccaccaatcgattgcacttgtatgccctgcacccgttataacctcctaaaacgatgcaaaagttagacaacaatcatgctacttgctgagaaagaatcagagaccaacattgacaacaagcggtttcgtaagatgaactgaaaaatgaaaagcatacatgtaaaattaactaaaagataaaaaggctacacctgggtcttatgataatgcatatcaagttgaaattaaaacaattactccaacaataagcataaagaaaacacaaggatcattcttactggagcgatatactcttcagtaccaacaaatgaatttgatggagtggaaggttctgagacaaatgttggggggagaaattcttgtgaccttcttcgttttaatgatgtggaattttttatcacctgcaggagatttaaccaacatcagggcaatatcaagtgttttaagtgcgatagtttcttatgaacaacaaaaacacatgctggaaaccaccaacaagtactcaatataaacatgttcttgacaccattactgactttgaatactatgcaagtggaaaactcaaagctcattactcaggaatgaagtatatttttgttttaaagtttgcgatcacacattctagcatacagactataaatgaccaaaaaaaatgaaggtaaatggaattagcaaatattctataaaaactgcagcaagcctgaaagtttattccctcaacttacgtggggttttgaagtcgtcaaaaatgaaagatcaaaatcagtcagtacaatgtgcccatctgcttggagcaaaatgttttctggcttcagatcacggtatataatacctacagcaggaataacacatgcagattagcaatctttgatctcataataagtccaatggcaaatcagtatctttaatgaaatagaaatagatcgccgattgttaacagtaaacattattaatacttggtttcactcaatgaatctgttcaaaagataggagcactaaattatgtaaacacatctatacctaggcaatgaaggtactcgagaccaattacaacctctgcagcataaaacctacagaacggatcaaaataatgttatataataaaagagagagtaggtgagtcgaatgatatagttaacataagatgataaggattcatggcaagaatctcaattatcttatttttatatttctttactcctttaaatgttccttgtgggggtggtggtgagtctgcctcacataactagtcaaaagagaagactgaaaagaatggatatcgaagacttctggtgggtgttcgagaaaaagactactggtagtattctgttacatttctttcttctttttttttttcatacatgtagttcttcaatcctacactacatgtatgtgacaaaattatttactagaaacaatttcattctattgagcctcagaaacagtatatcacaacaactgaactcaacagctgtttgcaaataatcattcacaagttagcaaaagcttcaaacattgcaatccatgcaaacccagcataatttattaagaaaaaagcaactttatcatcattatgggaaaactacatacttggatagtttctacaacagaacataattgtttgtatcaaatttgggggaaggaataatctggctggcagatccaagttcaatcaagtagttcatatttacttgtttgtctgcccatggggtttacatggcagtaaaagcaatgcagtagttccccaaatcagtttccacagttttatttatcataagctagtaaaatagattaaaaaatgtaataatatgtaagatgtaagtacttttgatgacacatctttaggtggccaaacctattacaggaacaaatattatttgtaaaaaaaactatattccatacttgggaaattatgtaagagatacacttcaagaatgaaagaaaaggtaaattttgaaaacatcatgattttcaaatagtggtatgtacgaactgacccagatgcaggaaattggaacaggtaccttgcacattcttccctgaaaattttcatgggttgcctatcaagcactgcaaagagttctcctcccggacaaaagtctgttatgagacaaacatgtgttggcgtctgaaaatagacaacattagtaaagaaccttgtggtttttaaattagctggataatgaaaaactagtatggaagttaatacaaaaactactctctgatgtttgtgaaatgatgaacaccttacagaagccatatttaactgaaactatgagtaattattttatttaactagcaatacaaaatatctgggataaagcattggtcataacaatgtcagtctaacctgaaatgaagtatacaatgttgggagaaatggatgatccaatagtgcgtatatttctctttcaatacaagctcgatgtacctgcaagagagagggagttgaagtaattcttgcaccttatcgtactagcaacagcaggaaaaaggttgatcacatccagcatggatggaaatacaataacaacataacagcatgctcatgttcatgaattaaaattaccttgttgcggttcaacatcactgacttgtccatggccttcattgcaaataattcaccacttccttgtagctcaaccaagtgcacactgaattcaaaaacaaagagatggtatagagatacttaaacagggtggtatagaggcactataacctagacatgcaccatacagaaaagaacaagggagcctaagaaatatactctatccaattagaaaaaacctaacattaatattatactagttgtatccagtcctgctaacttgtagccacataaaagaatatttctggtttgtcctgttaaggccattaaagaatttcaagatcccgtcgaaccacttagtgtcatggtagtgactatttttactaaaaaaacattttaattaatccaaactagacaaaactatgactgacgttaccagttttttatgatgcagtcaaagtaaacattttgtttctgacagcatgctttcagaagatataacaaccatctatcagttagcaaaaagacatcgtatagaagattgttcaggacatcttagtacctgccagtgtcaccacagccgagaggttttacaggcttgaagtgtttcaagccaatcttctcccctaaatttgtagcctgcatgccaaataataataaaaaatttatggtttcatagaatttaatttgggagtttcagttaatatgtttcccattcaattttaggatgcacattatcatatttttaaaaatcagagactattaagagcttagggtgctaccagcgtccagccatttagtacaatccaggggtacacatttgctactttggaacatgtgtgattacagtcattactttgcatggattcatgtactaattcactggaacatgtttatagtcatgcggacagcacgctcaaactaacctgggtgctggttagcgcttttgacggaccatatataatataatgcataaacttttttcttgaatatgcaagagagttgcgtatcatttcattatgaagaagagaaaacggaggaacggggagggacccctctcctcaccaagaccccacaggcctaggccttaacaaacacaaaacctgaaaccgacctcatcccggcagagctagcgacctatctatataatgcataaaatgtctaaagcgtttgcatgttgagcatctttctggatgatctgtacatgtaaacaaaaatcgcaaaaacagaaactacatgatctatcgtgaaactaatattatacagagtgcaaacgtacatatctagttatgagatacacactacacatcctcgttattcacatctagatttactaggtggcaaaacatcgcaaataatgagaccatgtacactttcaataagcttagttatgaactaagttactgcctgaaaatgggtgaaatgcagcatcatacataatatgtgctctcaattacctccatcatgttctacagtagtcctactttcagcataatagtaacaaacatataggcgctggacaacacaccatcatcccttttctgccttgctttctatttaacaaatattaatgcattcttgccaggaaatctggttaaaaaggataacatgagacactattggcgttaacctccaagttcacttactcagctagtcagaggaattcttttgctataagcctagcattatatattatagagtattatctaatttggtacagtttgactcattgctgctgcagtaatagaatttgcgcaccaaacaacaaaattaacgtaccttttctatagctatccaagaagggttattccgtttgtgaggttttggagaaacacgcattgagtgaattgcccacaaatcctctggtctctgagacaaagatagattgtgttatgccccaacataacagagaaaagttaaataaaatacttctctaactacaatattcatataaggtacattaccattttttctcttttataatttagatattagttgtttacagtgtgctgcacaatggccaagtgcaaacagatgcgaggagcaaaccaaaacaatcatttaagtgtgaacgtcagcgtgcatacacacggtttgaagttctatatctctgttgaaaaattttatttagggccacaagccatcgtatcaattttcacattagtcacttataaaatgtttctaaggttgctactaggacctggtggttattgtgctcctgttggtatttcttaaatatttcatcactaagattgaatgaggtttccatttcgccaaataatcttcagttctttatgaagattgatgatggtacaaattatttgtcaccattaaggatttaatccattattgcatagtctagtatgggcccatactatttttcatgtcttgttttgaactgagcaattattgttggttctacaTtttttttttgggcgcaaagttggttctacattttcacattgctgacaacttccatcaagaactaactactaataaagtgaaacaacaaaaagcagatgtaccttaccaagttggcatcaggaagctccctgactgcatcatccacattctctgctgtagctttgacctaattggacaccgtatgaaaatgaattagcatatttcaaatcttaaagcaatgctacaacctacaagtctgctcggcgtttccaagtttcagtatatgtgaatctgaagcaacaataatatacagggaattattatacaatttactggtatactgaagtatgaaactaagccatccaaaaacacaacatgttatggacctgaaccaactaaacagtatccaactgattgagacgtaaccaaatcaaatgctatccaactgattgacccagtctctagattcatctcatcttattcctaaattaaaatattatacaccaatttatatttgagatcattgaaatggaaattaatacagtaagctggcctaccaatttggcactctgtatctcagtattctccgaaaggcggttcctgaggggttcaacatgatcacttccatcaagttgcacaccaatgaagtattgaagctccccctgcactcacagatgtgcaatcactaccatgtagtaatcatacccactactagttaaaaattgcaagctccaaaatacttgggagtagcatttggcacagatttttcagataccttctggtcgcgcatgggttgaaggtggaacaagttccagaacttcttccctgatcacacaacaatccaaaatcagacaaaatcatcagagcttctacatcatccaacagtactactgtatatcatctaaaatctcaatatctatccagttcaagagagggattcgtgtccagagtttggagcattaccgctcttggtgtagttgattagctggaccgtgatctccttctgctccctgatggcctccctgatcttgtccaccgtgccctggtcggtctccggcccttgaaggaatctgccacaatcagcaagaccgcaactataaattcaaatgcggaggagaggaaacaattaaattcaccaagcaacaaggccatgggaacagaagcacaaacgtcgagagttacatagcacgaccgccgaccagccatggcggcgcgtgcgcgcgacgctagtagcccacaccaccatggggggcacggtcgcggagataacctcctccgccgccggcgcgcgcgacgggaggatgcgaggttagccgcggcaaggaggggtggatgcggcggcggatcgccgtcggggctaggcttacgcaggccgcggacgacggcgacgacggcggcggcggtgggcaaagccgctccgccgttgcgattgggctgggcttgggcttgggcttgggccttgggatatgagcctagtctgacccaagatcagatgtcacgagtaccgtgtttagtaggtcacaagtccaatttctgtcacatgttgcctgcctttgtagtgtgatttttagttgcactgtctaacttcagtcactatactactataaatattttttaaaccctttttgttttttatttaggcgataagtttagaaatgctatagaattttcttaaatttcacaaaagagaaaaataacatttttcacgaaaggtaatatgcttttttttaatcagcacaatctctagggtggaactttctagagtattttttatctagagaattatgctatcgtatttatcagggttatggataccacatacctaatagtagttgattaaatctcggcaggacccaccacataccatgtcttatacggaaataatcttcgaatatagaaggagttccgcataaggaaggatgaataaagttctacatggaaacgacaaggactactcgggttgtatccatattggttttcctagttctacatggacaaggggacacctattggtataaatacaagaccccctaggaagagaggggagacaatcaacatacacggaacaacagaagccacaacatacaagccaacatacgccaagacaaacgccagatatcgacaacagagatatacctggatcgaccctatccggttcctacagaggccgactgtagggatctagcgttgtctctgatctcgccggacacgaactcgaggaggaagactgccttgttgtcgactacgagtcagaccttcagaccgccatatcgacaacagttagataggctaccccaaatattgtattggtgtgattatgatgaataagagcaataccggcttcggccaacaggatgtagggttattacgtgacagcccgaacctgtataaaaatccctgtctccatctcttttacttcagtttcacgtataccctagtaccaacgatccccatactatgcaaataccggaatcgcgacatcaaacatcgacagtactgtaaaagagttttggcaccgcttaaacttttgaattatccataatcctcacgttaagatatctataataaaaaacatatgccatactccctccgtcccctatataaggtattgtgatattttacttatactgtttgaccattcatcttatttaaaaaaaattgaaattattatttattttatttttgacttactttattatccaaagtattttaagcataactttttgtttttatatttgcacaaattttttaaataagacgagtggtcaaacagtgtaagtaaaatgtcaaaatctcttatattaggggacagagaaagtatataacattaagtttatctactcatgcttaaaaaaatgcatatttatgaaaaccaatttacaccatcaaccaaacataggcggacgaacatcaagttttttctttatcctaaccacgacaattaggttgtgtgtgtttggctcaaagggatgggaattatccttcacacacacaatacacaacgactcattatcatatgatttattaaatattaactaaaattttgaaaaataattaatataattttttaaaccacttttctatagatatttttttttaaaaaatatacagtagtttgaggagcatttgcgtgaaaaacgagagaatagagtacaccaaagaaacacaaccttacaaattacataaaccaactcataggcaggcatgtaaatatattataaatatagatatggattctaatccctcgagacaacactttgcctctattcgagaacccaacagaggggagataaagtttcgggtattcgtggcacgcttcttaaactgttaaaatgtgcgattcgtgcgaaaattttctatatgaaagttattctaaaatatcagattaatttattttcctaagtttgtaataattaaaattcaattaactacaagttattatcacctcgttttacgtacaacactagttgattcacttgacaaacaataaaaagatgtgagcaagggggttttgaactcccgacctgcaattccttcccaggatctcttcccgcgtgtactccgtcagctccaggaagctatccgacgcgaagatctgcacaacccccccacaccacacccattctgtcagtcaccaccagcacacgcaaacacgccggcgaccggcgagaagaagagaccggcggcggcgaagtggctgcttacgatggggttgtccgggatcctggggtcggtgatgacgaagttcttctcgatgcgctccagcgtggtggccaggtcgatcccctgccggatgtccttctcccgctccgcccgctcccagctgtccgtcctctccaccacctccggcgccggcggtggcgccggcgccggctcctccaccaccgccggcgcctccctgctccccaccgagctcctcttcccgatcttgaacctgccaaagcatggacagacacaactctcagtgtcactgccgtcccggcaatctgtcgaacaggtggggtgcgagagtctgaccccatgagggaggagcggccggacttgcggccgctggcgagccggctcaggcgggactcctccttcttcaggtcccagagcggcgacttgaaggacccggctcctcctcctccgcccgagggagtgccgggtgccacgaccggcgacatggcggccatcttgtccgcgtcgctcatcttgggcggcgtcagcagcgccgcgtcggccggcgcgcgcgccccgcgcggctgcttcaccgtctgcaccacctccgtcatcgacgacatcgccttgtccttctgcctctctgcgctccacacacgccaatggcggcattggtaagacaagagaattagagaaacatcgaggaaacagaggattccgcggcggcggcggcggtgctcaccgtcgtagcggatgagcgacaccggcaactcgttcggccgcatccgcttgtcgctgagcccctccgtgtacttgctcacctccacctgcatcctgttcgctcatacccgaatcagaatcgcagcccagaactcgaatgcaaagctcatctcatctcatcaatggcgacgaacgactagtgcttcgcttacttacccgatgaacttgatgaccttgccgttgtcgtcgcggatgggggtgacggtgaggaggttccagaacggggcgccgtccttgcggtagttgagcaggcggccgcagaagctgcggccgtgcttgacggcgtcgcggatcttggccacctcggcggcgtcggtgtcggggccctggaggaagcggcagttgcggccgaccacctccctgggggagtagccggtcatggtgaagaacccctcgctggcgtagatgatggggcagtccgggcgcgtcgcgtcggacaccacgaacgtctgctgcaggctcgacagcgcgtccttgagctcctgcgacacccgcggcagggagtcgtgcgacgcgcgcccgacgccgccgtccaccgacgacttgccgctccccgtgccgccgctgtcgcgccccgccgtcgccggcgccaccggacgccacgcctgctgctggtgggcgccgctgcttccgctaggcgcatcctcggcgacgatctccaagccggcggtggcgccgccgccgccggaggtggggaacgccatccacttctccaccgcgtcgactatctccttcgagctgctgctgcccgccatggatgccgatgagattgtcctcggctatttatcagcgaaggtgtagcaatcttggccgtgcaaccatcgattcttgctgcaaacaacaccaaaaaaataataataatcagaaaattcatacattacactcacatccacccaaaaaggaacaaattaatcatcacaaaaccatgcaaccaacccttgctccaacaaatctaggacaccacgagaaaggcaaagatacctaaacagaaggattcttttgcttatctagggagtactataaaaaaaacccatccatttttttcactgttcaagttcagaaatgtaaagaacagcaacctgacagaagaatggtacaccaatcaaaacacccctctctctctctctctctctctctctcttcactgttccattaccctatccacttccttatctgggctactggtctacc
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| CDS seq | atggcgggcagcagcagctcgaaggagatagtcgacgcggtggagaagtggatggcgttccccacctccggcggcggcggcgccaccgccggcttggagatcgtcgccgaggatgcgcctagcggaagcagcggcgcccaccagcagcaggcgtggcgtccggtggcgccggcgacggcggggcgcgacagcggcggcacggggagcggcaagtcgtcggtggacggcggcgtcgggcgcgcgtcgcacgactccctgccgcgggtgtcgcaggagctcaaggacgcgctgtcgagcctgcagcagacgttcgtggtgtccgacgcgacgcgcccggactgccccatcatctacgccagcgaggggttcttcaccatgaccggctactcccccagggaggtggtcggccgcaactgccgcttcctccagggccccgacaccgacgccgccgaggtggccaagatccgcgacgccgtcaagcacggccgcagcttctgcggccgcctgctcaactaccgcaaggacggcgccccgttctggaacctcctcaccgtcacccccatccgcgacgacaacggcaaggtcatcaagttcatcgggatgcaggtggaggtgagcaagtacacggaggggctcagcgacaagcggatgcggccgaacgagttgccggtgtcgctcatccgctacgacggtgagcaccgccgccgccgccgcggaatcctctgtttcctcgatgtttctctaattctcttgtcttaccaatgccgccattggcgtgtgtggagcgcagagaggcagaaggacaaggcgatgtcgtcgatgacggaggtggtgcagacggtgaagcagccgcgcggggcgcgcgcgccggccgacgcggcgctgctgacgccgcccaagatgagcgacgcggacaagatggccgccatgtcgccggtcgtggcacccggcactccctcgggcggaggaggaggagccgggtccttcaagtcgccgctctgggacctgaagaaggaggagtcccgcctgagccggctcgccagcggccgcaagtccggccgctcctccctcatggggttcaagatcgggaagaggagctcggtggggagcagggaggcgccggcggtggtggaggagccggcgccggcgccaccgccggcgccggaggtggtggagaggacggacagctgggagcgggcggagcgggagaaggacatccggcaggggatcgacctggccaccacgctggagcgcatcgagaagaacttcgtcatcaccgaccccaggatcccggacaaccccatcgtaagcagccacttcgccgccgccggtctcttcttctcgccggtcgccggcgtgtttgcattccttcaagggccggagaccgaccagggcacggtggacaagatcagggaggccatcagggagcagaaggagatcacggtccagctaatcaactacaccaagagcgggaagaagttctggaacttgttccaccttcaacccatgcgcgaccagaagggggagcttcaatacttcattggtgtgcaacttgatggaagtgatcatgttgaacccctcaggaaccgcctttcggagaatactgagatacagagtgccaaattgagaccagaggatttgtgggcaattcactcaatgcgtgtttctccaaaacctcacaaacggaataacccttcttggatagctatagaaaaggctacaaatttaggggagaagattggcttgaaacacttcaagcctgtaaaacctctcggctgtggtgacactggcagtgtgcacttggttgagctacaaggaagtggtgaattatttgcaatgaaggccatggacaagtcagtgatgttgaaccgcaacaaggtacatcgagcttgtattgaaagagaaatatacgcactattggatcatccatttctcccaacattgtatacttcatttcagacgccaacacatgtttgtctcataacagacttttgtccgggaggagaactctttgcagtgcttgataggcaacccatgaaaattttcagggaagaatgtgcaaggttttatgctgcagaggttgtaattggtctcgagtaccttcattgcctaggtattatataccgtgatctgaagccagaaaacattttgctccaagcagatgggcacattgtactgactgattttgatctttcatttttgacgacttcaaaaccccacgtgataaaaaattccacatcattaaaacgaagaaggtcacaagaatttctccccccaacatttgtctcagaaccttccactccatcaaattcatttgttggtactgaagagtatatcgctccagaggttataacgggtgcagggcatacaagtgcaatcgattggtgggctctcggaattctattgtatgagatgctgtatgggcgtacacctttccgaggaaagaacaggaaaaagacattttataacatactgcacaaagaccttacatttcccagtagcattccggttagtcttgcagcaaagcaattaatccatggattacttcagagagatccttcaaatcgtataggttcaaatgctggtgcaaatgacatcaagcaacattccttttttcaagacatcaattggccactcatacgttgcatgagcccccctgaactagatgttcctctgaaactaattggcaaggaaactcaaccaaaagcgaagcctgatgaagatgttcccctaaatcttgatacattttaa
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| Protein seq | MAGSSSSKEIVDAVEKWMAFPTSGGGGATAGLEIVAEDAPSGSSGAHQQQAWRPVAPATAGRDSGGTGSGKSSVDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVSLIRYDGEHRRRRRGILCFLDVSLILLSYQCRHWRVWSAERQKDKAMSSMTEVVQTVKQPRGARAPADAALLTPPKMSDADKMAAMSPVVAPGTPSGGGGGAGSFKSPLWDLKKEESRLSRLASGRKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPPAPEVVERTDSWERAEREKDIRQGIDLATTLERIEKNFVITDPRIPDNPIVSSHFAAAGLFFSPVAGVFAFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENTEIQSAKLRPEDLWAIHSMRVSPKPHKRNNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKIFREECARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHVIKNSTSLKRRRSQEFLPPTFVSEPSTPSNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPSNRIGSNAGANDIKQHSFFQDINWPLIRCMSPPELDVPLKLIGKETQPKAKPDEDVPLNLDTF |
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| Function | Phototropin-2 [UniProtKB/Swiss-Prot:Q9ST27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0007640 | OsCMeo_04g0007640.02 | Chr04 | 13064604 | 13076972 | - | NAM | ||
| CDS seq | atggcgggcagcagcagctcgaaggagatagtcgacgcggtggagaagtggatggcgttccccacctccggcggcggcggcgccaccgccggcttggagatcgtcgccgaggatgcgcctagcggaagcagcggcgcccaccagcagcaggcgtggcgtccggtggcgccggcgacggcggggcgcgacagcggcggcacggggagcggcaagtcgtcggtggacggcggcgtcgggcgcgcgtcgcacgactccctgccgcgggtgtcgcaggagctcaaggacgcgctgtcgagcctgcagcagacgttcgtggtgtccgacgcgacgcgcccggactgccccatcatctacgccagcgaggggttcttcaccatgaccggctactcccccagggaggtggtcggccgcaactgccgcttcctccagggccccgacaccgacgccgccgaggtggccaagatccgcgacgccgtcaagcacggccgcagcttctgcggccgcctgctcaactaccgcaaggacggcgccccgttctggaacctcctcaccgtcacccccatccgcgacgacaacggcaaggtcatcaagttcatcgggatgcaggtggaggtgagcaagtacacggaggggctcagcgacaagcggatgcggccgaacgagttgccggtgtcgctcatccgctacgacggtgagcaccgccgccgccgccgcggaatcctctgtttcctcgatgtttctctaattctcttgtcttaccaatgccgccattggcgtgtgtggagcgcagagaggcagaaggacaaggcgatgtcgtcgatgacggaggtggtgcagacggtgaagcagccgcgcggggcgcgcgcgccggccgacgcggcgctgctgacgccgcccaagatgagcgacgcggacaagatggccgccatgtcgccggtcgtggcacccggcactccctcgggcggaggaggaggagccgggtccttcaagtcgccgctctgggacctgaagaaggaggagtcccgcctgagccggctcgccagcggccgcaagtccggccgctcctccctcatggggttcaagatcgggaagaggagctcggtggggagcagggaggcgccggcggtggtggaggagccggcgccggcgccaccgccggcgccggaggtggtggagaggacggacagctgggagcgggcggagcgggagaaggacatccggcaggggatcgacctggccaccacgctggagcgcatcgagaagaacttcgtcatcaccgaccccaggatcccggacaaccccatcgtaagcagccacttcgccgccgccggtctcttcttctcgccggtcgccggcgtgtttgcattccttcaagggccggagaccgaccagggcacggtggacaagatcagggaggccatcagggagcagaaggagatcacggtccagctaatcaactacaccaagagcgggaagaagttctggaacttgttccaccttcaacccatgcgcgaccagaagggggagcttcaatacttcattggtgtgcaacttgatggaagtgatcatgttgaacccctcaggaaccgcctttcggagaatactgagatacagagtgccaaattgagaccagaggatttgtgggcaattcactcaatgcgtgtttctccaaaacctcacaaacggaataacccttcttggatagctatagaaaaggctacaaatttaggggagaagattggcttgaaacacttcaagcctgtaaaacctctcggctgtggtgacactggcagtgtgcacttggttgagctacaaggaagtggtgaattatttgcaatgaaggccatggacaagtcagtgatgttgaaccgcaacaaggtacatcgagcttgtattgaaagagaaatatacgcactattggatcatccatttctcccaacattgtatacttcatttcagacgccaacacatgtttgtctcataacagacttttgtccgggaggagaactctttgcagtgcttgataggcaacccatgaaaattttcagggaagaatgtgcaaggttttatgctgcagaggttgtaattggtctcgagtaccttcattgcctaggtattatataccgtgatctgaagccagaaaacattttgctccaagcagatgggcacattgtactgactgattttgatctttcatttttgacgacttcaaaaccccacgtgataaaaaattccacatcattaaaacgaagaaggtcacaagaatttctccccccaacatttgtctcagaaccttccactccatcaaattcatttgttggtactgaagagtatatcgctccagaggttataacgggtgcagggcatacaagtgcaatcgattggtgggctctcggaattctattgtatgagatgctgtatgggcgtacacctttccgaggaaagaacaggaaaaagacattttataacatactgcacaaagaccttacatttcccagtagcattccggttagtcttgcagcaaagcaattaatccatggattacttcagagagatccttcaaatcgtataggttcaaatgctggtgcaaatgacatcaagcaacattccttttttcaagacatcaattggccactcatacgttgcatgagcccccctgaactagatgttcctctgaaactaattggcaaggaaactcaaccaaaagcgaagcctgatgaagatgttcccctaaatcttgatacattttaa
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| Protein seq | MAGSSSSKEIVDAVEKWMAFPTSGGGGATAGLEIVAEDAPSGSSGAHQQQAWRPVAPATAGRDSGGTGSGKSSVDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVSLIRYDGEHRRRRRGILCFLDVSLILLSYQCRHWRVWSAERQKDKAMSSMTEVVQTVKQPRGARAPADAALLTPPKMSDADKMAAMSPVVAPGTPSGGGGGAGSFKSPLWDLKKEESRLSRLASGRKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPPAPEVVERTDSWERAEREKDIRQGIDLATTLERIEKNFVITDPRIPDNPIVSSHFAAAGLFFSPVAGVFAFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENTEIQSAKLRPEDLWAIHSMRVSPKPHKRNNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKIFREECARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHVIKNSTSLKRRRSQEFLPPTFVSEPSTPSNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPSNRIGSNAGANDIKQHSFFQDINWPLIRCMSPPELDVPLKLIGKETQPKAKPDEDVPLNLDTF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0007640 | OsCMeo_04g0007640.01 | Chr04 | 13064546 | 13076972 | - | NAM | ||
| CDS seq | atggcgggcagcagcagctcgaaggagatagtcgacgcggtggagaagtggatggcgttccccacctccggcggcggcggcgccaccgccggcttggagatcgtcgccgaggatgcgcctagcggaagcagcggcgcccaccagcagcaggcgtggcgtccggtggcgccggcgacggcggggcgcgacagcggcggcacggggagcggcaagtcgtcggtggacggcggcgtcgggcgcgcgtcgcacgactccctgccgcgggtgtcgcaggagctcaaggacgcgctgtcgagcctgcagcagacgttcgtggtgtccgacgcgacgcgcccggactgccccatcatctacgccagcgaggggttcttcaccatgaccggctactcccccagggaggtggtcggccgcaactgccgcttcctccagggccccgacaccgacgccgccgaggtggccaagatccgcgacgccgtcaagcacggccgcagcttctgcggccgcctgctcaactaccgcaaggacggcgccccgttctggaacctcctcaccgtcacccccatccgcgacgacaacggcaaggtcatcaagttcatcgggatgcaggtggaggtgagcaagtacacggaggggctcagcgacaagcggatgcggccgaacgagttgccggtgtcgctcatccgctacgacggtgagcaccgccgccgccgccgcggaatcctctgtttcctcgatgtttctctaattctcttgtcttaccaatgccgccattggcgtgtgtggagcgcagagaggcagaaggacaaggcgatgtcgtcgatgacggaggtggtgcagacggtgaagcagccgcgcggggcgcgcgcgccggccgacgcggcgctgctgacgccgcccaagatgagcgacgcggacaagatggccgccatgtcgccggtcgtggcacccggcactccctcgggcggaggaggaggagccgggtccttcaagtcgccgctctgggacctgaagaaggaggagtcccgcctgagccggctcgccagcggccgcaagtccggccgctcctccctcatggggttcaagatcgggaagaggagctcggtggggagcagggaggcgccggcggtggtggaggagccggcgccggcgccaccgccggcgccggaggtggtggagaggacggacagctgggagcgggcggagcgggagaaggacatccggcaggggatcgacctggccaccacgctggagcgcatcgagaagaacttcgtcatcaccgaccccaggatcccggacaaccccatcgtaagcagccacttcgccgccgccggtctcttcttctcgccggtcgccggcgtgtttgcattccttcaagggccggagaccgaccagggcacggtggacaagatcagggaggccatcagggagcagaaggagatcacggtccagctaatcaactacaccaagagcgggaagaagttctggaacttgttccaccttcaacccatgcgcgaccagaagggggagcttcaatacttcattggtgtgcaacttgatggaagtgatcatgttgaacccctcaggaaccgcctttcggagaatactgagatacagagtgccaaattgagaccagaggatttgtgggcaattcactcaatgcgtgtttctccaaaacctcacaaacggaataacccttcttggatagctatagaaaaggctacaaatttaggggagaagattggcttgaaacacttcaagcctgtaaaacctctcggctgtggtgacactggcagtgtgcacttggttgagctacaaggaagtggtgaattatttgcaatgaaggccatggacaagtcagtgatgttgaaccgcaacaaggtacatcgagcttgtattgaaagagaaatatacgcactattggatcatccatttctcccaacattgtatacttcatttcagacgccaacacatgtttgtctcataacagacttttgtccgggaggagaactctttgcagtgcttgataggcaacccatgaaaattttcagggaagaatgtgcaaggttttatgctgcagaggttgtaattggtctcgagtaccttcattgcctaggtattatataccgtgatctgaagccagaaaacattttgctccaagcagatgggcacattgtactgactgattttgatctttcatttttgacgacttcaaaaccccacgtgataaaaaattccacatcattaaaacgaagaaggtcacaagaatttctccccccaacatttgtctcagaaccttccactccatcaaattcatttgttggtactgaagagtatatcgctccagaggttataacgggtgcagggcatacaagtgcaatcgattggtgggctctcggaattctattgtatgagatgctgtatgggcgtacacctttccgaggaaagaacaggaaaaagacattttataacatactgcacaaagaccttacatttcccagtagcattccggttagtcttgcagcaaagcaattaatccatggattacttcagagagatccttcaaatcgtataggttcaaatgctggtgcaaatgacatcaagcaacattccttttttcaagacatcaattggccactcatacgttgcatgagcccccctgaactagatgttcctctgaaactaattggcaaggaaactcaaccaaaagcgaagcctgatgaagatgttcccctaaatcttgatacattttaa
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| Protein seq | MAGSSSSKEIVDAVEKWMAFPTSGGGGATAGLEIVAEDAPSGSSGAHQQQAWRPVAPATAGRDSGGTGSGKSSVDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVSLIRYDGEHRRRRRGILCFLDVSLILLSYQCRHWRVWSAERQKDKAMSSMTEVVQTVKQPRGARAPADAALLTPPKMSDADKMAAMSPVVAPGTPSGGGGGAGSFKSPLWDLKKEESRLSRLASGRKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPPAPEVVERTDSWERAEREKDIRQGIDLATTLERIEKNFVITDPRIPDNPIVSSHFAAAGLFFSPVAGVFAFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENTEIQSAKLRPEDLWAIHSMRVSPKPHKRNNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKIFREECARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHVIKNSTSLKRRRSQEFLPPTFVSEPSTPSNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPSNRIGSNAGANDIKQHSFFQDINWPLIRCMSPPELDVPLKLIGKETQPKAKPDEDVPLNLDTF
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0007640 | OsCMeo_04g0007640.03 | Chr04 | 13064598 | 13077408 | - | IsoSeq | ||
| CDS seq | atgcgcctagcggaagcagcggcgcccaccagcagcaggcgtggcgtccggtggcgccggcgacggcggggcgcgacagcggcggcacggggagcggcaagtcgtcggtggacggcggcgtcgggcgcgcgtcgcacgactccctgccgcgggtgtcgcaggagctcaaggacgcgctgtcgagcctgcagcagacgttcgtggtgtccgacgcgacgcgcccggactgccccatcatctacgccagcgaggggttcttca
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| Protein seq | MRLAEAAAPTSSRRGVRWRRRRRGATAAARGAASRRWTAASGARRTTPCRGCRRSSRTRCRACSRRSWCPTRRARTAPSSTPARGSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 13064821 | 13065235 | - | OsCMeo_04g0007640.01,OsCMeo_04g0007640.03 | OsCMeo_04g0007640.01,OsCMeo_04g0007640.03,OsCMeo_04g0007640.02 | All |
| RI | Chr04 | 13075795 | 13076271 | - | OsCMeo_04g0007640.01,OsCMeo_04g0007640.02 | OsCMeo_04g0007640.01,OsCMeo_04g0007640.03,OsCMeo_04g0007640.02 | All |
| SE | Chr04 | 13071243 | 13072335 | - | OsCMeo_04g0007640.03 | OsCMeo_04g0007640.01,OsCMeo_04g0007640.03,OsCMeo_04g0007640.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.935794 | 4.742087 | 16.469412 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0304200 | RBH | 20.879183 | 21.740173 | 7.258967 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23890 | RBH | 13.558038 | 13.749624 | 1.823807 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0304200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007250 | RBH | 6.042629 | 4.488972 | 7.899733 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007890 | RBH | 6.063578 | 1.489762 | 3.316715 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007350 | RBH | 2.143771 | 0.010688 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007540 | RBH | 90.456940 | 3.412883 | 41.272831 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0223600 | RBH | 44.1416055 | 8.728759 | 0.4735455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007290 | RBH | 3.232400 | 0.284206 | 3.797371 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0221600 | RBH | 57.9445935 | 2.959342 | 2.307673 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007090 | RBH | 3.404476 | 0.167625 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007330 | RBH | 10.257863 | 4.888870 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007420 | RBH | 76.132271 | 8.358955 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007260 | RBH | 7.449994 | 0.289924 | 4.056479 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007620 | RBH | 5.292729 | 0.692990 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007300 | RBH | 6.221266 | 0.000000 | 8.142869 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007400 | RBH | 19.336348 | 16.492430 | 17.756613 |
