Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0004880 | OGI:04024960 | 4/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:7459863-7470773 | ||||||||
| Gene Symbol | rNBS17 | ||||||||||
| DNA seq | cagtactgattcttatattgaaaggtacatgcatgtatggattatagcatgtagtttacagccttatacaattcaattggtagatccagcatattacatgaaaatattatatatcttccaatatactcccaagagggactttctcagaggagaaagccaatgtttcaggattatttaaaaaataaaaaaatagcatagcacattaccaaatactccacaaatctattgatagcacattagctaaggattaattgggcaggacaagatgcgttatttagtactgtgcagaggcatcttggcacgagtacgtgttatgcagaaggaagagtaaaatatgtcactcctagatgcggtagagctcctgtacatgcgccattttctcgtgcattccattgctctcccagtaagtgttgaagtccttatgtagatgcagcagccatagcttcttcaaggagcgaagaaactcgatgccttcaggtacctttttcacattgtacaaagacacaatgtgcaaaccttcaatccgtggaagggcacggtcttcgatctccaccttgttgacatccggcatgtgtttcaaaacgagtgtctttagctctggaaaacaccctgcagaaagaactaatgtctttgtagtatacaccctgtttagtcttagaaaggtgaggtatggcacatgtgatgctaacagtgacaggggatcttccccaagatgacaccagcttagagctaagtacttgagatttctcccacagtcctgaaatattgggcattgcagtgtcccattggcccagtgccctctgacaattagcttgtggagcctccctgaaataggctcgagggttttgaaacaaagcgtctcagttttactacttgcggaaagaagcagggttgaaagaagtggcatatttgatagtgtagaaaaaagaactgcacaatcaacatcagttatgttgtcaatccacacgcttcacagttgcgtaagtttcttcagctgctcggccaaatctttgctggcttccacagtttcgagtgtctgcaactcttctaagttggatagctctttcggaggttgaactccagtgaagtaccggaaatctgaatgcttctcatcagcacatttgtcagctaaaaggtgtcgtagcttcctgaccttgacaatccctcgtggtagcttctctatttttgtctgcttgatgtctagagtgtggagattatagagtttctcaattgtctctggaaatgacttgactttggtgcgccttaagccgatatatcttaggttaaacagattccctatacttgttggcacttcagtgatttcagaatcttgcagctcaaggacagtgaggtaggtggattcagagaaaattgaggacaacatgttagaggaggatgaaattgtttgaactgatattaatgttcgaaggcgaggaaatttagctttatagacacctttgtcctcccaacgacacattgacaagcggcggacttcattatccatcagcatcattgtgccagaatcatttgctgaaccaaatctctcatctttagccacaaaaagagctagatcacgcataatgtcatgcatcttacaggtactaaccctaccaagttcatctgtctctaccacttccagcatattccggttgatcagttcattgagatttccttcagccacgtcttctggcgtgttgttttcttttcttgcagcaaatccttcagcaacccaaagtcgtacaaggttgtctcgtggcatggggcaatcctcagggaacatgctgcaatacaaaaagcagttactgaggtctcctggtaagtcatagtagcttaggttcagaattgcttgtacatgatcactctttgctagctcgctctgtagctgattgtatgtttgcttccaagcatgctgtatcggctgctttgaggacaacaggctcccaatagatacgatagctagaggtaggccttgacacctatcgacgattgaattagccaactctagaagttctgaggggcaatcgtagtccttcctgctataaaaagcccttctgcagaagagactgaatgcatcgaccttgtccaaaggttggagtttaaggtgacgtgttggtagagctagtgctgccacatgcttactccgtgtagtgatgatgatgcggcttgcctggagattttggaaggcatcatgtatttggttgtatgcttctctatcccagacatcatccaacactatcaaacaccttctatcacttatgttttctttgaacttctcttttaagtcatgaacatccataccatccaagtgtgcttgatctgcatatccaatcttcctgagtaccttcctcagcaattcttctacgtcataggtctgtgacacgacaatccaagcatgagcatggaacctgatcttcccacgctcatacacattggcaacaatggtagtttttcctaatccacccatgccagatactattatcactgtgctatctagttcatttgagtacaaccatccagtcaataacatcctgttgccttcgatccccacaagatcttcatcctttacgagctctggcaagcagccttgtgaccgctttctttcaaaatcagaatgtttattacggataagctgggatggttgcagccatttatctttcagctttataactctttggatttcctgctcaatctggactatctcagcaacaattccatcgaaaacaatggcataatgtgatcctttgacaacgtactttttcaggaacccttcttcctccatttgaagagcatgatatgagtatttgtccattacatcctcaacatggtaggccagctttcgtacctccgcaatccaacccttgataactttgtcagtgagatgtgctgtatctagttgttctatgacattttccattgttgttagttccattcttatttcttcaaccttccccggtaactccgccaaactctttcctttctgatatagcttggatactgcagatttggcaatatttgtgggatccaatccaaaagtactattaatctttgatagagcaagaataattgcttctgccatttgtgctgaggAaaaaaaaagttcatgttacacagtgcaggaacaagattcaggactcagtaaaactccatccagccttcttgcgttacctaattattaatttcaataagtagaaaatcaaaccatcatatagcaaatcaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaaggaaaatatccgatctaatgcgaattaaaaaaaatcaatttggtaatttgttgtgtttcagacaagaaacagaccaaatttgcagtttcggcgaatgaaagctaattaacaagccagataatatctttaatacaacatttagattacaaatatgaaataataattttggatttgaaatccaatagaacccaactgcaatgaaggtgtcagctttatgtttacaaaacaacaattttcccaccaatcaaagtaacataggagatcaatctttctccagtaccttttcttttgttataaagctttaaatctgtttggaaatttattattttcctgcatgttcgataaatcaattggacattggacttttgatactcctaaggacgttattagagatactgatagtatgcttccaaagttattttatttgccagatgacgtgcaggctatctattttgcatttctagcaggctgtggaaacaatggaataaatgatgcaaattagaaatgggttttcattttcttggatgtctcaacaactagagttgcattttttataaggaattgtataaagaagttgtacttgctatgggcctatgggtcttacgtctaagatcagctactgtagcactactagttatactcatccgccatactaagcaccagggaattagcctaagaaattaggtcagattggttaatgttatagtatcgtttgtttccatgatgttagggcatacattgttatactcactacaacaaaaacctcgtatagaggcacttttgtagaggcattttgtaaattgcttctacaatcagaagttttatagtgtagagacactttaaaaattgcctagaaaacttttactctagagacatttttatatcagtttgttagattttatcttgtagaggcattctttcggcactatgaaatgcgtctaatatgtaaaggcattttgttgagacattttaaactatgtagagacactttttagaatgataatgtgtactaaacgactaaatataagtaattaaaggaacaagtatacaagtaatgacatggagttgagttggttagtgtatcgaagattaaaatgatttaaccaaaagatcatgagttcaagacttatcaaaagcaaggaaactattttattctcttttttggactggttttatatgtttgcggtacaatttagtgtctctaaaaaatgcctctaccatcttatagacattttataaaatgtctcttcgtttgtagagacaattcaccataagacacttattagacattttttaaaatgcctctacattgttgtaaaggcatttgataagtgcctctacagtactagaaaaatgtctatacagagtatttttcttgtagtgtactatttattagttgggcgtgctaagtagagcccatggtgctacgtccttacatggggccccatcctcacacaaccatatattgtcttgtcatgccccagcaaacaataaggctgtaaatgactaaatacccatctatgtaaataagaatagttgaatgcatcacacaagtgtaaatcctcattgcttttcgaagggcaattattggtcctgaattggtagcttggcaagatctactgcccaaagtagctacgataaatcttcaacaacatggacggtttaaactattcaacgcgttgagctttgatgtactgcaaaaattccatattacatcgaacaactttgtgatactttatgaaacttgcaaagtagagttgttttttatggtacttgtgaaaaggtgttactccaaccaaggatagttgagtgaaaaggagatgacgaggtagtaaaatatgttgttttcatggtgctgatgaggctacacaacactctttcattgactgtaacagtttgctactagttttatttggcagactattcatatagtttatggtttacagccacccaaaaacattgatcatattttaggaactggattttgggtttggataaaaaaaacaagatctaaggtttcagcatgtgctaatgatatgttgggtaatctggttaagttgtaatcgcaacgattcaatcttgtatgcaggatatctatagtggacatattggctttgttattggtcattgctaaaaaatgaggatgagaaagcagaaatcaacatgggcttgtggggacatatatttgctaattaacactctaccggaagattaaaacaaaactttgaataagaaaaaaatttcgctgcatccaagagcaataccccgaatgaagctggtgccagaggaaggaaaaggacgaatgagttaggtatctgcagccattggcgccaggtgcggcggacgctcatccggctaaccccgaactccaataccccgccactgcaccgagagtgtgcataagaaacatcgccgcgagccaggagggctcggcacttgctacggctgggccgagaggaaggggggcacagctgattcaccgtgggggacggcagcagcaccaacgcgtgatggggtgtccaggtgagcgccgccggtaggcgctattttagctcgaggagaggagacgacgatgcggaacatggtttttgactaatttccaccaaataactgatatttttttatgagtggatgactacggggaccccaagaactgaactagtggaagtttctgaaattgcagggtgaaatttgaaatcaattatgaggtgcatctcaatactgctgcaaagtttagaatcctaaagctttggattttttttttaattttcactgaaaaaggagagcaggaaacgtcaaatgctagaaatgtcctggccacactagttatattatcctcttcctcatgcttgctttccattttcttgtgagcaatgatttgatattccgtggagtcttgtcgcgtgcccgtggtgccaacgttacagcgatgaaggccggtggctgacgaggagggtggaaaaggatgcagttgcatggcacagtcaccgtggggaagctgggttggtagcggtggctaggtagggtaacgaggatgtgggtgctgtggctgcttaactgttactcaggtgtaccgagacgatatccatggaccaactaccataggtgcaggacctgcttctggagattgcctaggtgtcccggtttaggtcatcatctgagaatgtcacagcctacttggggatgaattgtgcgcacgtgggctaaactcatgctaggggcctactcgccgattgcgctccaactgcttgccgtcatgcacagccactgcacctccggagcacattccatgcatacaacgcactctcgccgcttgtcaagttatagtatgcttcacgcccaaccatgctatttcttccaagcgctcgacagtgaggaccacgtccacatgattgatctcaaaatcatacaagggctgctgtgcttggggctctttcatattctttcttctcagctggccagccgtgctcgcttcacatgacagggcttcgctcgtcgctccatgtccttgaagccaatgtggtcaccacctcactacttcactgtctctctcggtctaccctttgatttttggcccatcaagggctagatcgggcatgacgctgatgctgctgtgctcctcggcctgcaccaccatggagagaaagggaaagtagagcggaactgaaataatctgatccaattgggccagtgccatttctaacatttcaaattatttccataaacctaaataaatattttattagatgtggtgtctagcagcaaattgacaaattttgatagtgttttcctccaaaaattaacttttgtcgtgcccacgaactaagatcctcaggacaataaattttgccatttttctgatgtcttcatttgggttcatttggttagatttattgggctatttattaattagatcaggatcaacgatagttgacgtattcaccgtacattcaatttgatactaaccaaagatctagatcaaggagatgatatctgtaatttgtatttgcaactaattgttgttccaagctatttgcattttgttatgaccatattttcctctctttatctataaatataaccaaataattcagtactttgtcatcataaatttaagacttagttgttcgacaatatttgcagagctcctggtctcataataaatgcagctcagagcgctaatttgatttattagtcttgattatacttatattacttttcaataagttcaattcctcgctcaccaggatgcatgtgacttttaatgttatatttgttgagacttgagaaccctcctttatatctatcccttctctcttcttatctaacctagtagttatctctggcacctttgtaatatacctcattctatttagtctgttttgctccatgtgtgtttctgtttcaatttaaatccactagacactagtgtttgtttaatgggaatagtcccacatgaagagtttagattagtctggagctgcttgtatacccacctcactccaaccataatacatgcgggttaacccttttatatgaactgaggatgaaagtgtaagtggagtgctatatgaacatggacccacgtaacgtgtagagaagactaatgtaattattatttggggctaggatgtaccatggtgcttgggaagtacatataattttctcaagttatttgcatacatgtttaatcagggagactggaataagtgagatgtatatactccctccaatcccaaatgatacttcctccgtccttaaaaaaaactctacttctagagtttgaattttgtcccataaaaaccaacttctaccatcctacctaccctcacaaataaaacaagaacttttatcccctttacctacctatcattacttttttaaataatgagggacattttggtcatttttctctccattaattttaccttggcatgttaggaatgctctttttgtgggatagagggagtacttgtcacctgacatcatttataactaaatcacttctgtttcttttgaaaaaaaataagctgttgcattctataaataaacattaagattccgttaatcataatctaaccataccatttaaaatatattaatattcaaagattaaataaacaatgacaaatatttggaataacaagtatgaaacagagggagtatattttaggatgaattccgatttacctctaaactattgcgtttgtccaatttacacccctaaactacaataccagatacttttaatcgtgatctatccaaaccggacgaattacccccctaagtccatccgagggggttttagtcgtaagtgcacacatggcatcggccccgcttgtcagcctccacttcatttgccctcccctatcaggctagtgggaccctcctatcagcgtcgactcatctcatcttcttcctttggccatgagggcaataaaagggcagggcaggtagtcgggctagagcttgagccctcccatcccctccgctctgcaatcctccttgtgaccttttcaccgctcgatgccgctctccttcctccgtacttacttccctcatttctccgtcaggtctgatcacggtgagccaggcaagcctagatctatctggtcaagctaatatggtcccatggagtggtgtgcccctagtgatgccggtgcccggtggtgcgaagaggagggacaatggggctgatggagaggagggggaaagggccctcgtgcaaaaactggaggcttgctgccggtggagttcctacttcctagaagggtttcatggtagacctgcagcgaagctgatggcgagacaattctctggaacatgcagctagtggtagatcaaagattgagacgaccagcccgagaggagatggcaacaggcatggtgatggctgtggtggtgggagaccaggacagattaaagtacgcgagcagttgtacccacctagcgtgggtgaggttttcggtatggccgacggcagcgcctgcatctgtgcctcctgcttgcaggagaagctcgggatgctcgactcttcgtcccagtcaaacccttcccacccactgtctgtgtgtcgtccaccttctcttcctattctttgaccagcaacctcaccgctgagaatggttgttggtgagctcactgagagaaaagcaggttgaatggtgaggaatagggatgaagatatatttttatctcagaatggttgttggtgagccgacgccgctcttccccctcgtaggcttgccgttagcgccgtgcgtcctcgtctgccatctaggagggcaagtgtagagtcccggagcaaatacacaagcacgccgtcctcgtcggcagcggcagcagcacgaacaagcagggccctgctgcaggagcttgcgactccactgctggcgccaggagatccaaatcaagagcaaaagttcaagcttgttgtcctcgtcgccgtcggcagttcgtcagttcggcaagttgatctgcttaattttggttggcctaggattcactaggaagaatataggatgtctgcttggttttttgtttggttccaatataacgaagctttcagatctataagctcggttctgttgatgggtgcaatattccaaattgatgtgtacaaaaattttgtggcaagactttgtgatttgtcggttgtttgatctattatgcaattacaaaaaatattgttcgcagccacaatcttcgatattttctttgaagcaaaagatttttgttgagtcactggtgtctattgactcgcaagctaaacgagctagctcgagctaccaaccgagccgagccgagctaggattttagcacgttaggataacgagctgagccgatcctaacgagctagaccgagctaagccgacccgagccgagtcagctcagtatccacctctaattatgtaggaccattaatgtctcgaaatatattagagggtaatttgtctgctttaaaaagtttgagacttgaaacgtccggtattgaaaatgagggggtaaaacaaactatgtcagaggttgagggggataattaagactttttcctatattttattgacaaatactggctagatatatcacacctaattcttttttattctgttttattatttagagcaaagatatttcaatctagctttataaaaatgctacatacggtacatacattcatgtctataatgtgaaagtgttgcatgacaagtatacgctataacataacatagggtgttaaaagcaaaatatattaatgaccggggtgagtataggttataagcactacccagaaaaaaaaacatggaaaccgacaggagtcttttccgccttggaagaaattttaaatatgaatgaaaaattgcaggtctatgagtaaatttcaagaaagggaataatcaagggggaacaaaattgccacagaatgacagaaacttcagcaacaatgaaatcaatacagttttgtaaaatttctttcagctagcgtagatatgatgctgtaaaacagtagtaaaattggtaccttgagttgtagatcaagatagctaactcaaactagctcatgcatggaagaacagccggttgatgttggtagcaaggaaaatatggacccgaacttcagatc
More
|
||||||||||
| CDS seq | atggcagaagcaattattcttgctctatcaaagattaatagtacttttggattggatcccacaaatattgccaaatctgcagtatccaagctatatcagaaaggaaagagtttggcggagttaccggggaaggttgaagaaataagaatggaactaacaacaatggaaaatgtcatagaacaactagatacagcacatctcactgacaaagttatcaagggttggattgcggaggtacgaaagctggcctaccatgttgaggatgtaatggacaaatactcatatcatgctcttcaaatggaggaagaagggttcctgaaaaagtacgttgtcaaaggatcacattatgccattgttttcgatggaattgttgctgagatagtccagattgagcaggaaatccaaagagttataaagctgaaagataaatggctgcaaccatcccagcttatccgtaataaacattctgattttgaaagaaagcggtcacaaggctgcttgccagagctcgtaaaggatgaagatcttgtggggatcgaaggcaacaggatgttattgactggatggttgtactcaaatgaactagatagcacagtgataatagtatctggcatgggtggattaggaaaaactaccattgttgccaatgtgtatgagcgtgggaagatcaggttccatgctcatgcttggattgtcgtgtcacagacctatgacgtagaagaattgctgaggaaggtactcaggaagattggatatgcagatcaagcacacttggatggtatggatgttcatgacttaaaagagaagttcaaagaaaacataagtgatagaaggtgtttgatagtgttggatgatgtctgggatagagaagcatacaaccaaatacatgatgccttccaaaatctccaggcaagccgcatcatcatcactacacggagtaagcatgtggcagcactagctctaccaacacgtcaccttaaactccaacctttggacaaggtcgatgcattcagtctcttctgcagaagggctttttatagcaggaaggactacgattgcccctcagaacttctagagttggctaattcaatcgtcgataggtgtcaaggcctacctctagctatcgtatctattgggagcctgttgtcctcaaagcagccgatacagcatgcttggaagcaaacatacaatcagctacagagcgagctagcaaagagtgatcatgtacaagcaattctgaacctaagctactatgacttaccaggagacctcagtaactgctttttgtattgcagcatgttccctgaggattgccccatgccacgagacaaccttgtacgactttgggttgctgaaggatttgctgcaagaaaagaaaacaacacgccagaagacgtggctgaaggaaatctcaatgaactgatcaaccggaatatgctggaagtggtagagacagatgaacttggtagggttagtacctgtaagatgcatgacattatgcgtgatctagctctttttgtggctaaagatgagagatttggttcagcaaatgattctggcacaatgatgctgatggataatgaagtccgccgcttgtcaatgtgtcgttgggaggacaaaggtgtctataaagctaaatttcctcgccttcgaacattaatatcagttcaaacaatttcatcctcctctaacatgttgtcctcaattttctctgaatccacctacctcactgtccttgagctgcaagattctgaaatcactgaagtgccaacaagtatagggaatctgtttaacctaagatatatcggcttaaggcgcaccaaagtcaagtcatttccagagacaattgagaaactctataatctccacactctagacatcaagcagacaaaaatagagaagctaccacgagggattgtcaaggtcaggaagctacgacaccttttagctgacaaatgtgctgatgagaagcattcagatttccggtacttcactggagttcaacctccgaaagagctatccaacttagaagagttgcagacactcgaaactgtggaagccagcaaagatttggccgagcagctgaagaaacttacgcaactgtga
More
|
||||||||||
| Protein seq | MAEAIILALSKINSTFGLDPTNIAKSAVSKLYQKGKSLAELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIKGWIAEVRKLAYHVEDVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQLIRNKHSDFERKRSQGCLPELVKDEDLVGIEGNRMLLTGWLYSNELDSTVIIVSGMGGLGKTTIVANVYERGKIRFHAHAWIVVSQTYDVEELLRKVLRKIGYADQAHLDGMDVHDLKEKFKENISDRRCLIVLDDVWDREAYNQIHDAFQNLQASRIIITTRSKHVAALALPTRHLKLQPLDKVDAFSLFCRRAFYSRKDYDCPSELLELANSIVDRCQGLPLAIVSIGSLLSSKQPIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSMFPEDCPMPRDNLVRLWVAEGFAARKENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLALFVAKDERFGSANDSGTMMLMDNEVRRLSMCRWEDKGVYKAKFPRLRTLISVQTISSSSNMLSSIFSESTYLTVLELQDSEITEVPTSIGNLFNLRYIGLRRTKVKSFPETIEKLYNLHTLDIKQTKIEKLPRGIVKVRKLRHLLADKCADEKHSDFRYFTGVQPPKELSNLEELQTLETVEASKDLAEQLKKLTQL |
||||||||||
| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0004880 | OsCMeo_04g0004880.01 | Chr04 | 7459863 | 7470773 | - | NAM | ||
| CDS seq | atggcagaagcaattattcttgctctatcaaagattaatagtacttttggattggatcccacaaatattgccaaatctgcagtatccaagctatatcagaaaggaaagagtttggcggagttaccggggaaggttgaagaaataagaatggaactaacaacaatggaaaatgtcatagaacaactagatacagcacatctcactgacaaagttatcaagggttggattgcggaggtacgaaagctggcctaccatgttgaggatgtaatggacaaatactcatatcatgctcttcaaatggaggaagaagggttcctgaaaaagtacgttgtcaaaggatcacattatgccattgttttcgatggaattgttgctgagatagtccagattgagcaggaaatccaaagagttataaagctgaaagataaatggctgcaaccatcccagcttatccgtaataaacattctgattttgaaagaaagcggtcacaaggctgcttgccagagctcgtaaaggatgaagatcttgtggggatcgaaggcaacaggatgttattgactggatggttgtactcaaatgaactagatagcacagtgataatagtatctggcatgggtggattaggaaaaactaccattgttgccaatgtgtatgagcgtgggaagatcaggttccatgctcatgcttggattgtcgtgtcacagacctatgacgtagaagaattgctgaggaaggtactcaggaagattggatatgcagatcaagcacacttggatggtatggatgttcatgacttaaaagagaagttcaaagaaaacataagtgatagaaggtgtttgatagtgttggatgatgtctgggatagagaagcatacaaccaaatacatgatgccttccaaaatctccaggcaagccgcatcatcatcactacacggagtaagcatgtggcagcactagctctaccaacacgtcaccttaaactccaacctttggacaaggtcgatgcattcagtctcttctgcagaagggctttttatagcaggaaggactacgattgcccctcagaacttctagagttggctaattcaatcgtcgataggtgtcaaggcctacctctagctatcgtatctattgggagcctgttgtcctcaaagcagccgatacagcatgcttggaagcaaacatacaatcagctacagagcgagctagcaaagagtgatcatgtacaagcaattctgaacctaagctactatgacttaccaggagacctcagtaactgctttttgtattgcagcatgttccctgaggattgccccatgccacgagacaaccttgtacgactttgggttgctgaaggatttgctgcaagaaaagaaaacaacacgccagaagacgtggctgaaggaaatctcaatgaactgatcaaccggaatatgctggaagtggtagagacagatgaacttggtagggttagtacctgtaagatgcatgacattatgcgtgatctagctctttttgtggctaaagatgagagatttggttcagcaaatgattctggcacaatgatgctgatggataatgaagtccgccgcttgtcaatgtgtcgttgggaggacaaaggtgtctataaagctaaatttcctcgccttcgaacattaatatcagttcaaacaatttcatcctcctctaacatgttgtcctcaattttctctgaatccacctacctcactgtccttgagctgcaagattctgaaatcactgaagtgccaacaagtatagggaatctgtttaacctaagatatatcggcttaaggcgcaccaaagtcaagtcatttccagagacaattgagaaactctataatctccacactctagacatcaagcagacaaaaatagagaagctaccacgagggattgtcaaggtcaggaagctacgacaccttttagctgacaaatgtgctgatgagaagcattcagatttccggtacttcactggagttcaacctccgaaagagctatccaacttagaagagttgcagacactcgaaactgtggaagccagcaaagatttggccgagcagctgaagaaacttacgcaactgtga
More
|
|||||||
| Protein seq | MAEAIILALSKINSTFGLDPTNIAKSAVSKLYQKGKSLAELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIKGWIAEVRKLAYHVEDVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQLIRNKHSDFERKRSQGCLPELVKDEDLVGIEGNRMLLTGWLYSNELDSTVIIVSGMGGLGKTTIVANVYERGKIRFHAHAWIVVSQTYDVEELLRKVLRKIGYADQAHLDGMDVHDLKEKFKENISDRRCLIVLDDVWDREAYNQIHDAFQNLQASRIIITTRSKHVAALALPTRHLKLQPLDKVDAFSLFCRRAFYSRKDYDCPSELLELANSIVDRCQGLPLAIVSIGSLLSSKQPIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSMFPEDCPMPRDNLVRLWVAEGFAARKENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLALFVAKDERFGSANDSGTMMLMDNEVRRLSMCRWEDKGVYKAKFPRLRTLISVQTISSSSNMLSSIFSESTYLTVLELQDSEITEVPTSIGNLFNLRYIGLRRTKVKSFPETIEKLYNLHTLDIKQTKIEKLPRGIVKVRKLRHLLADKCADEKHSDFRYFTGVQPPKELSNLEELQTLETVEASKDLAEQLKKLTQL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0004880 | OsCMeo_04g0004880.02 | Chr04 | 7459863 | 7470773 | - | NAM | ||
| CDS seq | atggcagaagcaattattcttgctctatcaaagattaatagtacttttggattggatcccacaaatattgccaaatctgcagtatccaagctatatcagaaaggaaagagtttggcggagttaccggggaaggttgaagaaataagaatggaactaacaacaatggaaaatgtcatagaacaactagatacagcacatctcactgacaaagttatcaagggttggattgcggaggtacgaaagctggcctaccatgttgaggatgtaatggacaaatactcatatcatgctcttcaaatggaggaagaagggttcctgaaaaagtacgttgtcaaaggatcacattatgccattgttttcgatggaattgttgctgagatagtccagattgagcaggaaatccaaagagttataaagctgaaagataaatggctgcaaccatcccagcttatccgtaataaacattctgattttgaaagaaagcggtcacaaggctgcttgccagagctcgtaaaggatgaagatcttgtggggatcgaaggcaacaggatgttattgactggatggttgtactcaaatgaactagatagcacagtgataatagtatctggcatgggtggattaggaaaaactaccattgttgccaatgtgtatgagcgtgggaagatcaggttccatgctcatgcttggattgtcgtgtcacagacctatgacgtagaagaattgctgaggaaggtactcaggaagattggatatgcagatcaagcacacttggatggtatggatgttcatgacttaaaagagaagttcaaagaaaacataagtgatagaaggtgtttgatagtgttggatgatgtctgggatagagaagcatacaaccaaatacatgatgccttccaaaatctccaggcaagccgcatcatcatcactacacggagtaagcatgtggcagcactagctctaccaacacgtcaccttaaactccaacctttggacaaggtcgatgcattcagtctcttctgcagaagggctttttatagcaggaaggactacgattgcccctcagaacttctagagttggctaattcaatcgtcgataggtgtcaaggcctacctctagctatcgtatctattgggagcctgttgtcctcaaagcagccgatacagcatgcttggaagcaaacatacaatcagctacagagcgagctagcaaagagtgatcatgtacaagcaattctgaacctaagctactatgacttaccaggagacctcagtaactgctttttgtattgcagcatgttccctgaggattgccccatgccacgagacaaccttgtacgactttgggttgctgaaggatttgctgcaagaaaagaaaacaacacgccagaagacgtggctgaaggaaatctcaatgaactgatcaaccggaatatgctggaagtggtagagacagatgaacttggtagggttagtacctgtaagatgcatgacattatgcgtgatctagctctttttgtggctaaagatgagagatttggttcagcaaatgattctggcacaatgatgctgatggataatgaagtccgccgcttgtcaatgtgtcgttgggaggacaaaggtgtctataaagctaaatttcctcgccttcgaacattaatatcagttcaaacaatttcatcctcctctaacatgttgtcctcaattttctctgaatccacctacctcactgtccttgagctgcaagattctgaaatcactgaagtgccaacaagtatagggaatctgtttaacctaagatatatcggcttaaggcgcaccaaagtcaagtcatttccagagacaattgagaaactctataatctccacactctagacatcaagcagacaaaaatagagaagctaccacgagggattgtcaaggtcaggaagctacgacaccttttagctgacaaatgtgctgatgagaagcattcagatttccggtacttcactggagttcaacctccgaaagagctatccaacttagaagagttgcagacactcgaaactgtggaagccagcaaagatttggccgagcagctgaagaaacttacgcaactgtga
More
|
|||||||
| Protein seq | MAEAIILALSKINSTFGLDPTNIAKSAVSKLYQKGKSLAELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIKGWIAEVRKLAYHVEDVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQLIRNKHSDFERKRSQGCLPELVKDEDLVGIEGNRMLLTGWLYSNELDSTVIIVSGMGGLGKTTIVANVYERGKIRFHAHAWIVVSQTYDVEELLRKVLRKIGYADQAHLDGMDVHDLKEKFKENISDRRCLIVLDDVWDREAYNQIHDAFQNLQASRIIITTRSKHVAALALPTRHLKLQPLDKVDAFSLFCRRAFYSRKDYDCPSELLELANSIVDRCQGLPLAIVSIGSLLSSKQPIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSMFPEDCPMPRDNLVRLWVAEGFAARKENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLALFVAKDERFGSANDSGTMMLMDNEVRRLSMCRWEDKGVYKAKFPRLRTLISVQTISSSSNMLSSIFSESTYLTVLELQDSEITEVPTSIGNLFNLRYIGLRRTKVKSFPETIEKLYNLHTLDIKQTKIEKLPRGIVKVRKLRHLLADKCADEKHSDFRYFTGVQPPKELSNLEELQTLETVEASKDLAEQLKKLTQL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 7462943 | 7470672 | - | OsCMeo_04g0004880.02 | OsCMeo_04g0004880.02,OsCMeo_04g0004880.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.586418 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0219600 | RBH | 0.829693 | 0.618118 | 0.429409 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14220 | RBH | 0.609254 | 0.515781 | 0.081356 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0219600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004690 | RBH | 0.061921 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005330 | RBH | 0.138162 | 0.000000 | 0.117424 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007970 | SBH | 0.305399 | 8.817049 | 1.676870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006440 | SBH | 0.025478 | 0.060152 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000940 | SBH | 0.927060 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0091300 | SBH | 0.434348 | 2.5582425 | 1.486456 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001050 | SBH | 0.0 | 0.056818 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000910 | SBH | 0.0 | 0.081087 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006750 | SBH | 0.031073 | 6.329325 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001020 | SBH | 0.0 | 2.236707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000880 | SBH | 0.0 | 0.0 | 0.081117 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001050 | SBH | 0.125053 | 1.408552 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G006560 | SBH | 0.420107 | 0.0 | 0.121737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001050 | SBH | 0.0 | 0.0 | 0.0 |
