Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0001070 | OGI:04004540 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:1390882-1391568 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaggcacaagaaaccagcccatcttagacatgcatccatccatgaagctgcagagcctgctcctgaaggctgtattccatataagtaatgcaatgatgccccaaaagccaatggcgaaggacccagcaacgaaggaccagtagatcagcggcgtgtccatggtatccgttgacaacaactgatgcatctcatcatcgctgtcatgtgagcagttcgagttcatcggacaaatcttgtcaacaatttctccacagaggttctcattctcttcgaatgccattccgttcaacgtacaaagctgtgattcaaagggaatctcaccggagagattgttgtatgcaacactgaagaagctcaggaaggagaggttggccagctccactgggacactcccattgagatggttgtgtgagagatccatgctctccatttcatgcaggtacatgaacgtgtcaggtatcgaaccaacaagcttgttgtgtgataggttgagcgatttgagctgcttcaagaacccaacagagctagggatgggtccggatagccgattcatcgacaaatctatgcctgtcatgagctctaaaggcattcccatgtatgtcaagctctcccctttcgtcgtgaattcgacatatgtctgtcttctctgtgtgatgttgccaaatgggtcatcctcagagttcat
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| CDS seq | atgaactctgaggatgacccatttggcaacatcacacagagaagacagacatatgtcgaattcacgacgaaaggggagagcttgacatacatgggaatgcctttagagctcatgacaggcatagatttgtcgatgaatcggctatccggacccatccctagctctgttgggttcttgaagcagctcaaatcgctcaacctatcacacaacaagcttgttggttcgatacctgacacgttcatgtacctgcatgaaatggagagcatggatctctcacacaaccatctcaatgggagtgtcccagtggagctggccaacctctccttcctgagcttcttcagtgttgcatacaacaatctctccggtgagattccctttgaatcacagctttgtacgttgaacggaatggcattcgaagagaatgagaacctctgtggagaaattgttgacaagatttgtccgatgaactcgaactgctcacatgacagcgatgatgagatgcatcagttgttgtcaacggataccatggacacgccgctgatctactggtccttcgttgctgggtccttcgccattggcttttggggcatcattgcattacttatatggaatacagccttcaggagcaggctctgcagcttcatggatggatgcatgtctaagatgggctggtttcttgtgccttga
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| Protein seq | MNSEDDPFGNITQRRQTYVEFTTKGESLTYMGMPLELMTGIDLSMNRLSGPIPSSVGFLKQLKSLNLSHNKLVGSIPDTFMYLHEMESMDLSHNHLNGSVPVELANLSFLSFFSVAYNNLSGEIPFESQLCTLNGMAFEENENLCGEIVDKICPMNSNCSHDSDDEMHQLLSTDTMDTPLIYWSFVAGSFAIGFWGIIALLIWNTAFRSRLCSFMDGCMSKMGWFLVP |
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| Function | Receptor-like protein 13 [UniProtKB/Swiss-Prot:Q9C6A6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0001070 | OsCMeo_04g0001070.01 | Chr04 | 1390882 | 1391568 | - | NAM | ||
| CDS seq | atgaactctgaggatgacccatttggcaacatcacacagagaagacagacatatgtcgaattcacgacgaaaggggagagcttgacatacatgggaatgcctttagagctcatgacaggcatagatttgtcgatgaatcggctatccggacccatccctagctctgttgggttcttgaagcagctcaaatcgctcaacctatcacacaacaagcttgttggttcgatacctgacacgttcatgtacctgcatgaaatggagagcatggatctctcacacaaccatctcaatgggagtgtcccagtggagctggccaacctctccttcctgagcttcttcagtgttgcatacaacaatctctccggtgagattccctttgaatcacagctttgtacgttgaacggaatggcattcgaagagaatgagaacctctgtggagaaattgttgacaagatttgtccgatgaactcgaactgctcacatgacagcgatgatgagatgcatcagttgttgtcaacggataccatggacacgccgctgatctactggtccttcgttgctgggtccttcgccattggcttttggggcatcattgcattacttatatggaatacagccttcaggagcaggctctgcagcttcatggatggatgcatgtctaagatgggctggtttcttgtgccttga
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| Protein seq | MNSEDDPFGNITQRRQTYVEFTTKGESLTYMGMPLELMTGIDLSMNRLSGPIPSSVGFLKQLKSLNLSHNKLVGSIPDTFMYLHEMESMDLSHNHLNGSVPVELANLSFLSFFSVAYNNLSGEIPFESQLCTLNGMAFEENENLCGEIVDKICPMNSNCSHDSDDEMHQLLSTDTMDTPLIYWSFVAGSFAIGFWGIIALLIWNTAFRSRLCSFMDGCMSKMGWFLVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.608962 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0672600 | SBH | 0.222013 | 0.533158 | 0.590281 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02920 | SBH | 0.383245 | 0.377435 | 0.060191 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0672600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029570 | SBH | 0.000000 | 0.147078 | 0.258064 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001020 | RBH | 0.0 | 0.0 | 0.171461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029000 | RBH | 0.041309 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001070 | RBH | 1.162431 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0025500 | RBH | 0.760835 | 0.694158 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001140 | SBH | 0.000000 | 0.0 | 1.323360 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0023600 | SBH | 2.8984605 | 2.399337 | 3.7837625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001070 | RBH | 0.075250 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001010 | RBH | 0.132531 | 0.0 | 0.150714 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005010 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001150 | RBH | 0.585395 | 0.0 | 0.335626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001120 | SBH | 0.305872 | 0.0 | 0.0 |
