Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g02920 | OGI:04004120 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:1160646-1166868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTTGCTCACGAGCCTCTGTCTTGGTTTGCACCTGCAAATGGACCGACGACGACGACCACGGACGCCTCTTCTGACCGCACTGTTGCTCGTCTCGCTGGCTGCGGCGGCGGCGGCGAGCGGCGCGCCCTGCTCCGGTCTATCAAGCCGCTCTTCGTCGGCGGCGAGTTCGGCTACGGCGATGCCTGGAACGAGAGCACCGACTGCTGCGGCTGGGAAGGCGTGGTCTGCGGCGGCGGCGGCGGCGGCCACCACGTGGTGTCGCTGTCTCTGGTCCAGGCCGGCATCGCCGGCGCCGTCGACGGCGCGGCGTTCGCGGCGTTCACGGCGCTGCAGGAGCTGGACCTGTCGTGGAATCGAATCTCTGCCTTCTCTCTTCCATCTGCAGGAGGTATGTACGCATGCATCCATCTTCGTCAGAATCGAACCAAGCATAACTTAATTTGAAGTTCCAAAATGGACAATTTGATTTAGAATTGCAAAGTTTTTCAGATTTGATTTTATCTTCTGCGAGGATGATGATGGAATTGATTTTATTTTAATCTCAACCAGCATGATTGTGTGCATGCCTATATGGATTCTGCGGGCTTAATCTTATTTTAATCATATTAATTACAGTTTTTTTATCAGCGAAACACTAAACTGTACATTATGAAAATAATAGTTACTATTAAAATATTTAAAAGATATATAGGACAGTATGTTGAATATTTTGTCTCGTGCATATATAAAACAACAAATCTAATTTTAATGGTTAAAATATAATTATTATTATCGTCAAACTTCATGTGAGATTTTATGGATACGAATTCAATGATATAATTGGATTATTAAATAAGTGATTGTGATGATCATTAGAGGCCGAGAGAAAGAAAAAGGAGAGAAGAGCTGTTGAGCTAGTGGGCTTGGGCTGCTTTGGTTCGCCGAGCTTTGCTAGCGTTAAGTGCTTGCTGGCAGCAAGCAGCAGGCCTTTGGACATTGTGCCCACGTTAGGGTTGTATGATACCATTCTTTAACTAAAACTTGCCATGTTGTAGGTAGCAAAAAAATTATGAAATTTGATCAAAATTTAGTTAAATTAGTTCATGAAAAGTTGGTAAAACGTAGAAATTTTTTGAAAGAACCCATTTCACCCTGGTTGGTCCGTTGTCACAACCCATGGGGAATGCCCTTCGAATTGAAAGAACACACATGTTGCTCTTCATATTTAATTGATTCAATTCGATCTAATCATACAAATTACAGAAACACTGGAAAGCCTTTCACCAAGAGAGCAGCTAAGCATGTATATCCGTATCTATTGTCACTCAAACAGTTCAAGGTTATTTTAGTGTGTACGGCTAGGACTTATCTTAAAAGTAGTAGAATTTAATTTGTAGCTCAATGATTTTGCATTTTAGTTTGGATAAATTTGAACCAAGTAACACTGGTCGAAGGATCAGATATTCAAAGGAAATAAGTTATAGAAGGGTAAAAGACTACTATTTCAGATATTCAAGGCTCCAGGCCATTGGTGCCGGCGTAACATGGTCTGTGTTGGTCTCAGCCTCGCCGTGGTCGGCCGCCACAATATACTGTATGGCCATTGTTTCCGCTACTTTGTTTGCACCACCAACTGACCAACATAAATGCCCAAGACAACTAGACAGCGAGAGTTGCCAGACCAAGTAGGTCATTTGGTCTTCCGTTTGCCTAGGAACAAGGGCATCTATTTAAGCCACAAATGAATAATACATCCTATATTTTCTCTGAAATATTTGGGTATGCCGGTGCATACCCGGCACCACCCCTAGGTCCACCCCTGATGGTCCCATCTCGCGAGCAGCATTAGCAGTAGCGTGGCCGAATTTAAAATTTTCTATGTAAAGTGAGGACATAAACGTAAACGGTTATATCAGAGGTGTGGTTCAACCAATTGGTTTGGATATAATTATTTTTGGTGGATGCACTAAATTACAAGAAAAAAAAATTGATACCCACATGTTATTAATCTTTTACTTATCGTTGTATGTCTACGTGCTCCCACATAGTATTGGCCCAATGTCTGTTTTTTTCCTCGAGTTGGGTACACAAGGAAAAGCATTTTCCTTGTTAAAAAAGAGCTAATTGCAGGTTGGGCAATGTATTTTTCTAGCAAAGATTCAATTTGATCATCTTTTGTCCAATATTTTTGCTTAAAACCATATATATCTTTGGATAGGGGTGGGCATTTAGTCAGACCGAACAATTTGGTCTCGGCCTTCAGTCTTTAGTGAAATTTCGGTCATCAGATTCTTGAGACAGATTAATCCTGAACAAAATCGAAGATCGACTACTTTGGTCAGTCTGGTTCAGCCTTGGTCACAACTGAACTAAGCGCTTTGTGTTCACAGCCAAAATAAAAATCACTGGTGAAGAAACAATTACACCATCGAACTGACTGCAAAATATGTAATTACAGACAAAAAGATCACAGAAAACAATTACACATATACATGCTGTATTGCTGTATAGGGCTATTGGGCTGCACAGTGAAATTCGGCCATTTTCAGTTAACCGAGCCATATAACCAGACTAAATTTGGTTAGTACACTTTGATGACTGAATTTCTCAGTCTCGTTTTTTTTCCCTCAATCTGTTCGGCTCGGTCTATTTTGTCTACCTCTATATCTTTGGCTTGGAGGAAACTATCGGGGTCTAGTGGCTAGCAGCATGGTTGGTGAGTTAGTCATCCCAGGTTCGGTTCCTCCCTTCTACAAAATATTTGGGGGATGTCTCTCCCTCCAAATATTGTTTTTTTATATCTTTGGCTAGGCTATCTCACACTTTTTGCTACTGTCTCTCCAATCTCTTCTCCACCTCCAATTCCTGACCTCCACCATGGCCATCGTCAGCTCAACCCTTGACCTCAAGCTCATGATCTAGCTCTGTCCACCTAGAGCTCCAACGATTACTTTCTCTAGATGACAATAGAGAGCTGAAGCTCGGTAGCAGGCCTCTCTAATGCACTCAGATCCTAGCAACTGGCAGGGTTGGCAACGGGGTGGATCAGGGCTGGGTTGGACAAGATTAGCCTTAGCCTTGACTTTCTCCCCCAACCTCTGGCCTAAAGGAGAAAACAGTGCCAAATAAAGCCCCGCCCCTGGTCTTGCTAGGGACCTAACCTCCCATCAAGGCCTCATTAGTTGCTGGCAGGCAACAAAGACACATAAAGGTGGTGTGGAGGTGAGGTTGGTGGGCATGTGGTGGGTGGTGGTGGGAGGCATGTAGTCAAGGGAGCCGAGGGAGGCGGCGGAGCAGCAGCTGCACGTTTCGTGCGATGAAAATGAGGGTGGCGTCACTCGGGACTGGGAGAGGGAGTTGTTGTGCATGGACATACACATCGATCCTTGAGCTAGTAAGGTATGTGGGGATTAGTTTAGATCCATTTTATACTCCAAGTATTTGGGCCAGCCTGATATTGTGGGTTTTTCTCTTGTAACTTGAGGAGATATCCTCCTCCATTGAGATTAGTTTCTTGGCCCTAGGCCCTCATGATGTCGGGGCGCCATGCTGATGGATTCGCAGGTGCAGATTTTGCTCTCGTCCCTTAGATGCGGGTCTCTACACCCATTAGGGAAACTGTCACCCATAGCAGCCAGATTTGAGAAAGACGAACTCAGCCCTTGGTTGTGCTTATCTGAGAGTCCACCCTCTGCTAAGCTTGATCTATGCTTGCATCACCCAAAACTAGAAGATTGAACTTGTGCACCCTACCCCAATGATAGAGCTCCATTTCCTACAACCGTGCCATGCTGCCCAAGCTCGAGGTCCATCTTGGCCTATGTCCTCATGGCCCGTGGATTTTACCTCTACATCTGAGTGCCGATTTGAGTAGTGGGAACTTAAGGATATAGTATATCGATTCATGTCTAACTCTACATTTTTTTAAAAAAAGAAAGAGTTTTGCTTGCCAGTATGTTTTAACAATATGCACAATAAAATAGAATAACTCAGATTGTTATGTACCAATTTAGGTGAGCGTGCATTTCAGAAGCTTAGCAAGCTCTCGCTTTCGCACAACAGTCTAACAAATGAAGGCGTTGCTGCTCTAGTTATCAACCGAACTACACTTTCAGAGCTGTACCTTGGCGGAAACCAGTTACTTACAACAAGTTGGATATCCAATTTGACGTCTCTTAGGGTGGTTGATTTATCCCAGAACTTCTTACACGGATACAACGGTATATCTCCGCTCTTTTTGTTAGTATCCAGGGCAATTTATCCAATATTTGTGTTTTAGTTTTGCAGGTATATGTAACCTCCATCAACTAGAGTACCTACACCTTGGTGTCAACATGCTACATGGAACCATAAATTCATGCTTGGGAAAACTACAACAATTGAAGTACCTGAACATGGAAAGAAACTTTCTCATGGGGGAGATTGCACCGAACTTACTTATCAACTTGACCAAACTGGAGACTATACACCTGGGGGTGAACAATCTTACCGGCACATTCATGCTCTCCTGGCTAGCAAACAGCTCAAACCTCGTTGATGTTGTCCTCTCACACAACTACAATCTGAAAATCGAAACCGAGCTTGTGAGATGGACACCGTTGTTCCAGCTGGTATACTTGAATTTAAGCAACTGTGTTATCAATAGGCGAAGCAATGGAGTTGTGCCGACTTTTCTGTCAACCCAGCTTAGCCTATCCGGGATCGATCTCTCGCATTGTTCGCTCCAAGGCAGGATTCCACCCTGGCTGTTCTACAATCTATCTGATTTTGTCTTGCTCAATGGCAATAGAATGGATGTCATTGATATGGATGGGCTTGGTGGTAACATACCTCACCGGTGCAGGTGCTTGATTTGTCAGAGAACAAAATATCGATGTCGATCCCGACCAACTTTGGAAGCATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCCATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGAGGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAATAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACCATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGAAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATATGTCTAGCTAAGAGTCTAGGAGACATGGAAAGACAGAGCAATCCCTTCTTTTTTTTTGCACGAGATGCACATGCTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAATTAATAATAGAATTTATATTAAATGTTC
More
|
||||||||||
| CDS seq | ATGTCGATCCCGACCAACTTTGGAAGCATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCCATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGAGGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAATAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACCATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGAAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGA
More
|
||||||||||
| Protein seq | MSIPTNFGSIFQFLDYCDMSSNRLYGGIPSLAEATSLEVLDLSSNNLNEEILPTLIGNLSILTSLLLSNNDLTGPMPPFHWNLGSLKHLSLENNRFSGWLSPLLSNSSNLKTLNVRNNHLSGIIPDGLLSFQQLGVILLGGNDFHGPIPLDLCFNNYLHFVDLSNNQFSGEIPNCFYNDFWTDLPMYFNDDPFSGNITERMSVDFTTKGENLTYMGEPLVLMTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIPFQQQLGTFDESAFEGNDNLCGEIINKNCSSVLHQNQGVFDAIDTSLVFWSYVFGCFALGFWGTVALLIWDEVCRRRLCDLMDALMFKLGWEFVP |
||||||||||
| Function | Receptor-like protein 13 [UniProtKB/Swiss-Prot:Q9C6A6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g02920 | LOC_Os04g02920.1 | Chr04 | 1160646 | 1166868 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGATCCCGACCAACTTTGGAAGCATTTTTCAGTTTTTGGACTACTGTGACATGTCCTCCAACAGGTTGTACGGTGGGATTCCATCATTGGCAGAGGCAACATCATTGGAGGTGCTTGACTTGTCATCTAACAACCTCAATGAGGAAATATTGCCAACATTAATAGGGAATTTGTCAATTCTAACATCTCTTCTACTCTCCAATAATGACCTGACAGGGCCTATGCCACCTTTCCATTGGAATTTGGGTAGTTTGAAGCACCTCAGCCTTGAGAACAACCGATTCTCGGGATGGCTATCTCCATTGCTGTCGAACAGCAGTAATCTCAAGACACTCAATGTGAGAAACAACCATCTATCAGGAATCATCCCGGATGGCCTCCTGAGCTTCCAACAGCTTGGTGTGATCCTCCTTGGAGGGAATGATTTTCATGGTCCAATACCATTGGACCTTTGCTTCAACAACTATCTCCACTTTGTTGATCTCTCCAACAATCAATTCTCTGGGGAGATACCAAATTGCTTCTACAATGATTTCTGGACAGATTTGCCAATGTACTTCAACGATGACCCATTCTCAGGCAATATCACAGAGCGCATGTCTGTCGACTTCACGACGAAAGGCGAGAACCTTACCTACATGGGAGAGCCTCTAGTGCTCATGACGGGCATTGATCTGTCCATGAATCAATTGTCAGGCGCCATCCCTCCGCCATTAGGTTTCCTGAGGCAGCTCAAGTCTCTAAACTTATCACATAACCAACTTGTTGGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCTGCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCCAACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGAAATCATCAACAAAAACTGCTCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTGTTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGGATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGA
More
|
|||||||
| Protein seq | MSIPTNFGSIFQFLDYCDMSSNRLYGGIPSLAEATSLEVLDLSSNNLNEEILPTLIGNLSILTSLLLSNNDLTGPMPPFHWNLGSLKHLSLENNRFSGWLSPLLSNSSNLKTLNVRNNHLSGIIPDGLLSFQQLGVILLGGNDFHGPIPLDLCFNNYLHFVDLSNNQFSGEIPNCFYNDFWTDLPMYFNDDPFSGNITERMSVDFTTKGENLTYMGEPLVLMTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIPFQQQLGTFDESAFEGNDNLCGEIINKNCSSVLHQNQGVFDAIDTSLVFWSYVFGCFALGFWGTVALLIWDEVCRRRLCDLMDALMFKLGWEFVP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.383245 | 0.377435 | 0.060191 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0122000 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11370 | SBH | 0.598032 | 0.140762 | 0.256654 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0122000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000990 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000950 | RBH | 0.0 | 0.0 | 0.128012 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001020 | RBH | 0.0 | 0.0 | 0.171461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001090 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001010 | RBH | 0.913721 | 0.0 | 0.863303 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0024000 | RBH | 0.0417615 | 0.1492595 | 0.0039505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001140 | RBH | 0.000000 | 0.0 | 1.323360 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0023600 | RBH | 2.8984605 | 2.399337 | 3.7837625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001000 | RBH | 0.173806 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001100 | RBH | 0.224238 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001090 | RBH | 3.107825 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000950 | RBH | 0.271558 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001140 | RBH | 0.083257 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001060 | RBH | 0.125353 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001120 | SBH | 0.305872 | 0.0 | 0.0 |
