Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0023360 | OGI:02065690 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:23210913-23216166 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctccctccgaccgaccgccacaccaccaccccccacccctcttctctctctctctctctctctctctctctccacatccccatcgtctctcaccgcgttgctgctgctgctgccgcctcggccaccgcgcgcccgcccgcgcgtcgcacgcagcttcttcctcttcttcttcttccccaccctctccacccgatgcggcggtcggcgccgcgctgctgctgctgatgcgggcggtggtgaagaggcgacgagggggagagcgcgggcgctgctgcggctattggagatccggggcttcgtggtaagcaagctctgctccccacccccgcccgctccctactgattcccgcctgatcccgccgggattccgctagattgctctgccccccgcgcgcgccagcggcgagctcggctttgctgtgctgtgctgcggccgccgccgccgctattggctgcgcgacgcgtgggggagaaatgggcttaggcttttaagcgtgctgtttaggcttttgactgctctgtggctgtgcttatggtagaagccgccgttaaaaggtggctcgattttttgttttttctccctttctttttgtgtcagggatcgtgcggggctaggctgggctcgagcaaggtcacgagtgagttagtacggggatggtgatcttgtcatgatacaatgcggtgtggctgtttcttttttttttttggtgagagtttggtagagagatgacaaatcgtggcttagttttcaaattctttgtgattttgtttcccaatgcggcccccaagtagctcactatgtttgcaaagcacatggaataccattttattgaaccattttgtttttttgttcgtggggcattaggttggaagtttaatgctggatatttatgcacattttgttgctctgatcaaaggttttagttggctctgttgtaagcttaagagggaattagtgatttagtgtggctcatgtaccttgagtagaaatggtcgaatgccatggatcattgtagtatatatatacatctacgccactgtgctatacgcttgtatttttgtacaaattaacttctaattctttaggaatgtgaatttgtccaattcgagggtttcttcttgtttattataaccgtgcatttgtaagtgaccaacgtgtcttcgtgatgtaccagtccaactttcaaatacttccaaaaagtttaattggtgaatacatgtgggttcctcatagtttttacctatgtcaagtatcatgctcagcacttgttcatggtttatttctaccccagttttacgttatagtttatatagaaatgtcacactgtcactttctggaacattcaatcagtattcatgatatatacaacatactttacaatactttctggaagtagaatttgcttgaacacgttagatccttctagtttcctcctacgtccaatgaagtgaggtactttacttgtgtttatgatatacttttctatcgacttgcaaaaactttctaaaagttgagtttcttaataaccttaatgtcttttgatgcgctgtacgcgtgccatatgctatgcttttacaccaacttccaagttttccctaaaagctgttcttctatttaagcgattagtggggtcgtgtgaccccacgggacccaaagtggatccatttcgacggggatggaatctgggagtgagttctatgcgggcgaaggtctccagatcgaccccaagtggctcatcgacccaaagcttctctttgttgggccacggattggcgaaggtgcacatgcaaaggtctacgaggggaagtaagtctcatatttttgcactgtcatctataatttgatgatctgtgtgaaagttttgcttctaaattaatttttgattgatgctgggattggcaggtacaagaaccaaaatgttgccatcaagattgtgcacaagggggacacccctgaggagatggtcaagagggaggggaggttcttgagagaggtgactatgctgtcaagggtgcagcacaagaaccttgtcaaggtcttgatctttttgttgactcttatcatttcttttcttggagtggcagttgtggatgcttttgaatgttgaaaatgtactcgcttgttgttcagtttatcggggcttgccttgagcctgtcatggtggtggtaactgagctactagtggggggctctttgcgcaagtacttggttggccttcggcctaggagcctggagcctcgtgtagctgttggatttgcgttggatattgctcgagccatggaatgtttgcatgcgcacgcgatcattcatcgtgatcttaaacctggtaagattgctatttggaaacctggttgcttcatgggcatttacatggtggatttctgcaatccggaataataactattcattagttcatatacaccatgaggtcagacagttgcaggacttctttttgtgtgtgtgtccttgggtgttgggggcatggtccattcctgtgcataatcaatttcttcagtgggtactcatatgtcatcttgtatcaacttctaataataatttgaatttcacacagctgtttgccaaaaaactaatgttttttttattttaatattacattaaacattctttgtggatttaccccaccagccaaagtcacttgaagattcaagacaaataaaatgttctcattagtaacataggatgagaattgagaatataatctactctggctgtctgacctattatgtaaagttaagcttcatattgcacaagcaatgtgcatttttcaagggcaggaatgagctcttctttttacattcaatcttattaagttatggtgaattggtgatgtttggaagttaagtcaaaaggtagcagtgtcaatggcttgttcctcttttcctgtgtcctgttgtgtctgcatgtgatgctattatgggctagtctatttatgggaactaagcctaaataccacaaatagcactaattgtgggtgtaatggaagacgagtgcaggggagcaggcaatctatattgtttgtgtatgtttgtccaatgaggtaataacctcaatcagcaaatatagtgggggaaggaactgattcaatctgtcataccatttttctcttcattctttattattgcatggactggtctgcaatgatggagatctgtctagatattcatggcgttgattgggaaatttactaattatagaaaaatgtttcaagataataatgattatacagctttctgaggatttcttggttgaccttcgatggaagaaaccaaatttaagtccatcttgtactatgttttcaatgaataataatgtggacgaattagtaatgtggaagattccaagtacgaccggcatatgatccattagaggggcccctggggggcgggcatcttaaaaaggtagcttcagttctgaccttctgatagccaccttccaagggcggttccttttggaaagaggtggttctcccaaatggtttattattgtttttcggtttaagatataatagaatctctaagcatgctaagtttatactgtatagtgtatcaagtagcaaaacattcaggacgggtgtacctagtgcaaaagtgaaccagcaactagaaaaggactgctattatttcctctttcgataaaatgccaggaaatattaatgagctgaacatcggatgccagtggagtactactgattctagttcacgaatcaatgcatagctctgttattcaaaaaacagtactatatttctctactgtaaatttacctaatactatttggtgttttttttcagtattttcttttcagagctatttttttgaaaaaaaatcaagccagaaatatttgtacaaataaggtttatcatgagccattgttttgtccttctgtacgtacagagaacttgctgttgaccgcagaccagagaacagtcaagcttgttgaccttggtttagcaagagaagagacattaacagagatgatgactgcagagacaggaacataccgttggatggctccagaggtttctgttactgcagttcatatttgtcaatataattcttttttgtcaatatttgctaatcctgaaatatatccacagttgtacagcacagtgacattgaggcatggagaaaagaagcattacaatcataaagtagacgtttatagctttgcaattgtgttatgggaactccttcacaatagactgccctttgagggcatgtctaacctgcaagctgcttatgctgctgctttcaaggtataattactgatacttcagtctaatgtgtggaagagtggtttgtcaatgctatttgcttgaataccatattttctcaacatttgcatcgttaggtttagatgtacatatgaagctgccagtgtggcgtttgtaaggctattattcaagtttgacttcaccactcagtctttcccctgggtgggttttgctgtaggctcttgattaattttcatagagctctggtttttttaccatatgtattttttcctgtccatattctggtatagtatatctggtatttgacatgatgcaagcctcattttctgcagaacattagacctagtgcagataatttgcctgaggagctatcagaaatcctaacaacctgctggaaggaagaacccaatgagagaccgaacttcacgcagatcgtacaaatgcttctgcattacctttccaccctttcgccaccagaacctctggctccgcctcggacgttcagttcagagaatgcaatcttgcctcctgaatctcctgggacaagctccctaatggcttctcgaggcgacctcggcgacacaccgaagggcaagatggaagacaagccaagggggttctttttctgcttcagccagtgctattagcacagaacaaaggaaactcccctggaggatgcaaatatgaagagaacattacctcctgatgcacagcggctcggatcacggcccggcggcgagtcccggtgcccatagcccatacccaaagaatggcagaagttcttgtagaactgttgtttctgctagtcagtccacccctctcttcttctgacatgtttaacataccggcaggataaatcgagtaagcttttgactcctgctatcagtgatgaaaatagttctgtcgtatattttcggtggacaagttattcaatgtctaaactgcgcccgctcatcgtatagtaataatccgcattcatcagttttctcctgtgctgga
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| CDS seq | atggaatctgggagtgagttctatgcgggcgaaggtctccagatcgaccccaagtggctcatcgacccaaagcttctctttgttgggccacggattggcgaaggtgcacatgcaaaggtctacgaggggaagtacaagaaccaaaatgttgccatcaagattgtgcacaagggggacacccctgaggagatggtcaagagggaggggaggttcttgagagaggtgactatgctgtcaagggtgcagcacaagaaccttgtcaagtttatcggggcttgccttgagcctgtcatggtggtggtaactgagctactagtggggggctctttgcgcaagtacttggttggccttcggcctaggagcctggagcctcgtgtagctgttggatttgcgttggatattgctcgagccatggaatgtttgcatgcgcacgcgatcattcatcgtgatcttaaacctggtaagattgctatttggaaacctgagaacttgctgttgaccgcagaccagagaacagtcaagcttgttgaccttggtttagcaagagaagagacattaacagagatgatgactgcagagacaggaacataccgttggatggctccagagcctcattttctgcagaacattagacctagtgcagataatttgcctgaggagctatcagaaatcctaacaacctgctggaaggaagaacccaatgagagaccgaacttcacgcagatcgtacaaatgcttctgcattacctttccaccctttcgccaccagaacctctggctccgcctcggacgttcagttcagagaatgcaatcttgcctcctgaatctcctgggacaagctccctaatggcttctcgaggcgacctcggcgacacaccgaagggcaagatggaagacaagccaagggggttctttttctgcttcagccagtgctattag
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| Protein seq | MESGSEFYAGEGLQIDPKWLIDPKLLFVGPRIGEGAHAKVYEGKYKNQNVAIKIVHKGDTPEEMVKREGRFLREVTMLSRVQHKNLVKFIGACLEPVMVVVTELLVGGSLRKYLVGLRPRSLEPRVAVGFALDIARAMECLHAHAIIHRDLKPGKIAIWKPENLLLTADQRTVKLVDLGLAREETLTEMMTAETGTYRWMAPEPHFLQNIRPSADNLPEELSEILTTCWKEEPNERPNFTQIVQMLLHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFFCFSQCY |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0023360 | OsCMeo_02g0023360.01 | Chr02 | 23210913 | 23215814 | + | NAM | ||
| CDS seq | atggaatctgggagtgagttctatgcgggcgaaggtctccagatcgaccccaagtggctcatcgacccaaagcttctctttgttgggccacggattggcgaaggtgcacatgcaaaggtctacgaggggaagtacaagaaccaaaatgttgccatcaagattgtgcacaagggggacacccctgaggagatggtcaagagggaggggaggttcttgagagaggtgactatgctgtcaagggtgcagcacaagaaccttgtcaagtttatcggggcttgccttgagcctgtcatggtggtggtaactgagctactagtggggggctctttgcgcaagtacttggttggccttcggcctaggagcctggagcctcgtgtagctgttggatttgcgttggatattgctcgagccatggaatgtttgcatgcgcacgcgatcattcatcgtgatcttaaacctggtaagattgctatttggaaacctgagaacttgctgttgaccgcagaccagagaacagtcaagcttgttgaccttggtttagcaagagaagagacattaacagagatgatgactgcagagacaggaacataccgttggatggctccagagcctcattttctgcagaacattagacctagtgcagataatttgcctgaggagctatcagaaatcctaacaacctgctggaaggaagaacccaatgagagaccgaacttcacgcagatcgtacaaatgcttctgcattacctttccaccctttcgccaccagaacctctggctccgcctcggacgttcagttcagagaatgcaatcttgcctcctgaatctcctgggacaagctccctaatggcttctcgaggcgacctcggcgacacaccgaagggcaagatggaagacaagccaagggggttctttttctgcttcagccagtgctattag
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| Protein seq | MESGSEFYAGEGLQIDPKWLIDPKLLFVGPRIGEGAHAKVYEGKYKNQNVAIKIVHKGDTPEEMVKREGRFLREVTMLSRVQHKNLVKFIGACLEPVMVVVTELLVGGSLRKYLVGLRPRSLEPRVAVGFALDIARAMECLHAHAIIHRDLKPGKIAIWKPENLLLTADQRTVKLVDLGLAREETLTEMMTAETGTYRWMAPEPHFLQNIRPSADNLPEELSEILTTCWKEEPNERPNFTQIVQMLLHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFFCFSQCY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0023360 | OsCMeo_02g0023360.02 | Chr02 | 23210913 | 23215814 | + | NAM | ||
| CDS seq | atggaatctgggagtgagttctatgcgggcgaaggtctccagatcgaccccaagtggctcatcgacccaaagcttctctttgttgggccacggattggcgaaggtgcacatgcaaaggtctacgaggggaagtacaagaaccaaaatgttgccatcaagattgtgcacaagggggacacccctgaggagatggtcaagagggaggggaggttcttgagagaggtgactatgctgtcaagggtgcagcacaagaaccttgtcaagtttatcggggcttgccttgagcctgtcatggtggtggtaactgagctactagtggggggctctttgcgcaagtacttggttggccttcggcctaggagcctggagcctcgtgtagctgttggatttgcgttggatattgctcgagccatggaatgtttgcatgcgcacgcgatcattcatcgtgatcttaaacctgagaacttgctgttgaccgcagaccagagaacagtcaagcttgttgaccttggtttagcaagagaagagacattaacagagatgatgactgcagagacaggaacataccgttggatggctccagaggtttctgttactgcacctcattttctgcagaacattagacctagtgcagataatttgcctgaggagctatcagaaatcctaacaacctgctggaaggaagaacccaatgagagaccgaacttcacgcagatcgtacaaatgcttctgcattacctttccaccctttcgccaccagaacctctggctccgcctcggacgttcagttcagagaatgcaatcttgcctcctgaatctcctgggacaagctccctaatggcttctcgaggcgacctcggcgacacaccgaagggcaagatggaagacaagccaagggggttctttttctgcttcagccagtgctattag
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| Protein seq | MESGSEFYAGEGLQIDPKWLIDPKLLFVGPRIGEGAHAKVYEGKYKNQNVAIKIVHKGDTPEEMVKREGRFLREVTMLSRVQHKNLVKFIGACLEPVMVVVTELLVGGSLRKYLVGLRPRSLEPRVAVGFALDIARAMECLHAHAIIHRDLKPENLLLTADQRTVKLVDLGLAREETLTEMMTAETGTYRWMAPEVSVTAPHFLQNIRPSADNLPEELSEILTTCWKEEPNERPNFTQIVQMLLHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFFCFSQCY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0023360 | OsCMeo_02g0023360.03 | Chr02 | 23210915 | 23216166 | + | IsoSeq | ||
| CDS seq | tccctccgaccgaccgccacaccaccaccccccacccctcttctctctctctctctctctctctctctctccacatccccatcgtctctcaccgcgttgctgctgctgctgccgcctcggccaccgcgcgcccgcccgcgcgtcgcacgcagcttcttcctcttcttcttcttccccaccctctccacccgatgcggcggtcggcgccgcgctgctgctgctgatgcgggcggtggtgaagaggcgacgagggggagagcgcgggcgctgctgcggctattggagatccggggcttcgtgcgattagtggggtcgtgtgaccccacgggacccaaagtggatccatttcgacggggatggaatctgggagtgagttctatgcgggcgaaggtctccagatcgaccccaagtggctcatcgacccaaagcttctctttgttgggccacggattggcgaaggtgcacatgcaaaggtctacgaggggaagtacaagaaccaaaatgttgccatcaagattgtgcacaagggggacacccctgaggagatggtcaagagggaggggaggt
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| Protein seq | SLRPTATPPPPTPLLSLSLSLSLSTSPSSLTALLLLLPPRPPRARPRVARSFFLFFFFPTLSTRCGGRRRAAAADAGGGEEATRGRARALLRLLEIRGFVRLVGSCDPTGPKVDPFRRGWNLGVSSMRAKVSRSTPSGSSTQSFSLLGHGLAKVHMQRSTRGSTRTKMLPSRLCTRGTPLRRWSRGRGG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 23213240 | 23214827 | + | OsCMeo_02g0023360.01 | OsCMeo_02g0023360.01,OsCMeo_02g0023360.02,OsCMeo_02g0023360.03 | All |
| A5 | Chr02 | 23214951 | 23215485 | + | OsCMeo_02g0023360.02 | OsCMeo_02g0023360.01,OsCMeo_02g0023360.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.656861 | 12.547927 | 6.718922 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0594100 | RBH | 2.646426 | 2.442009 | 2.268962 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g38080 | RBH | 1.697671 | 1.636277 | 0.581878 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0594100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023290 | RBH | 0.594006 | 14.248353 | 5.721675 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023390 | RBH | 0.299293 | 5.658025 | 2.653483 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017390 | RBH | 0.875200 | 0.0 | 0.049206 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023090 | RBH | 0.373770 | 0.654693 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022970 | RBH | 4.399258 | 12.191190 | 11.596973 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0376900 | RBH | 8.2848755 | 20.7112605 | 27.204055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022750 | RBH | 0.245894 | 1.312073 | 1.400327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0404700 | RBH | 10.2610025 | 20.291044 | 26.3853885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023140 | RBH | 0.094940 | 0.208394 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022970 | RBH | 0.238890 | 18.457382 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023330 | RBH | 0.0 | 13.434564 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0023030 | RBH | 0.327053 | 1.042056 | 1.069726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022840 | RBH | 0.507189 | 10.888863 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023280 | RBH | 0.534309 | 8.046087 | 4.846710 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023140 | RBH | 0.850477 | 5.659944 | 7.107893 |
