Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0046650 | OGI:01121920 | 10/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:42557483-42561312 | ||||||||
| Gene Symbol | OsEGL2 | ||||||||||
| DNA seq | gtataaattaggaatagtacaaatcgcaggcacacgatgaaaaatacacaatactgacacaataacaaacgtatacacccctctatctccaggctcgtgctatacatgttgacctctcctcgcgttcacaaccaattactgtacagatacgcatacagaagtagtcagcacgtagcacggccgcatacatatgtttcgaccaaccgatggtatgttcagacccgacgggaattctctgcattaccgctgatataggatgagccactattatataggatcaaactactggctgccgctcgtaattgctactgtaccaacagcactgcagaggatccgtgtccgtgtcaaatacgggcatggaagctaatggggtagaccctatcggtgctggggtagaagaggccccaattctgctccacgccggcctccttgaggttctcgttgaacatggcgaacacgtacgtctccgtcttcttcccgggatgccgcggcgtgccattccggacgtgcctcaccaggttctggttgaatgtcatggcgttctccaccgacgcgcccacgccgcccgccgtcggccacccggtctcagacaccaccaccctcacgttctctcccccgagcttcgccaccgccgtgtacagcgcgtccaccgtcgcgtcgaactggttctggtacccgtactccccgtcctgcaccaccgcgccgctcgccgtgaacagcgcgaagctgatgtccatgccccccgggttgtatgagtagatgaagtatgggtacaggttggccagcagcggcgcgtgcgtccgttccaggaatgggatcacgtagctcatgaacggcttcgcctcgtcggtgaactcgccggcggacggcgggatgtggacgccgatggtggcctgggagatcgacgtcgtcaccttgatgtgtcccagcccggccgccgcgagcgcggcgtggacgttctccatggccgggacgaggagctgcgtgtcggcgccggcgacctcgttgcccacgacgacgaaccggaacaggaccgtcgggtaggcctggatgttctcgcggatccaggcggccgcggcggcggtcccgccgtgcgccagggcggggaggtcgtagttgggcgcgccgacgacgacgcggatgcccgtgccgccgagcgccgcgagcgcggcgctgtccggcgcgtagaggcgcacgacggtgaagccgttctcgcggagcatctcggtgaccttgctcgccggcggcaggttgtcgccgctcatgccccagcatactccaaccgctgccgttcctgtctcagattccatttcaacctttgtcaaattaaagcttaagcttctgatttgattttttttgcagtatacgtaggttaatcgctaccgcattttatagtaacccgaactttaatttgtaggcacgcaagcaagaaattaacgtaacgtaggtacgtatgtagcttgcaaagacgcaatgacaaacaaaatcgagaaggcaatcatatatacaccgtacattagcatgcgtggaaggatccctcttgaactttattgctggaattgccgttgtgttgccaacaattaaaatggcactccctccagtcgtcagggatgatcaaacttttaaaaattatagcagtcaatttatattagagtaagtttattaaaacctaacaaatctatatatttgataatgtttttcaagtcaaatcaatttgtactgtttttttaactaagtatttgagaaattgttgacggttgaaattttaatatttgagttcatgtttcgtagaagatgagatgagatggttgaggagcacagacagtgagatcagaccggaaggaccggcaaggagtcaatccaaacctcgttcgacaaattgacttcagcgacatctcggaagaataatttagactcatggaaactgacgtttaactgaaaacgaagatgtagtagtacaactgcactagcacagattcctaatttccgtcgttttttttcccaatcgtaagtgctctctgatggtactcgcaactaacttatgttcgttaaaaacatgcacctaatcgagttagttgacggcaattctgccaaagtgctttacatacattcagagtttcagactcagatacttagtccgtcgagcaccagttaaataaacaaatcaggtggtggagcgtgcaatttgccgaaatttgttagctaccaaagcagagcatgcagttcttgactaattaaagtttcatgcatactagtagcattattatttgtccatatcttacatgtacagacgaactaactaacctctgttctttagaaaggaaaagaaaaaaaaacaataaccaaacaatctggttcacaaaatcacaacctagcaaatttgcccatgcaaacaaagtagctgtcaggtagaaagcgaaggaccacgtacgggaaatggaattgaaaacgtctgttccaacgtctgcagcacgactgttggacagtccaattcgttcgcatgcatgcaggcatgcaaccgtgtccatttcgatagctaacaggattacaggactgcaccagcctgcccgtgatcacggccggcctcgccggtcgcgcttgtttgttaatcaagtgcagaaaagccaaacgatgcaaagaaacttccttttcggcttatggactaatggattgtcaccggcagtcatggtacactttctaagcctctaaacgatgtactccaaaaattttcttcaccagcctttgttagaaacaatttttaaatcaacttttaaattttctaatatttaattactctcaaataactgttacgaactcagtttgtgctatcatccatcaaagggatcgggctgagttctttctccaattttcttaactcatctcccttatttttcacgcgcacgttttttaaattgctaaacggtacgttttttataaaaattttctatatgaaagttgctttaaaaaatcatattaatcgatttttcaaaaaaatgctaatatttaattaatcatgtactaaactgctccattttacgtacgtggaacgaacacagcctagtccatagattttgggcaaatgagttactgacaagctggtacgtgcgtactttcacctctcctgaaggaatcgtaatctagcgtgcagtagtgctggtaaactatcacacatcatgcatcttaatgacgcccctaaaaccaattaattttctaacagaatctagctttgtggtaccatactagtttcttaatacagtagtatgcgtaatcgtgcacgaatttcacaggaacggtgagaattttcccgtgtttcatcaaaccaaacgtttgcattgtatatttccatgcatagcgttcatgctgaagaaagagatgcgtccttgaatctacgctcgattgcttacatgttttgttttcttaccgtgttaccgtttcactaaatgagtatctcgcgtaacgcttgtcatgtagtactaatgtgcaagatagtaactccactacttgaaatcaacaaactcactcgtacgttcggcaatggcttgcacaccaatttcaactttttcacggcacaactcttcacataggacaataaacttttcgcattgcaagctaatacaaaaaacacaagaactaaacagaagcagagtatgctagaagaaaagcaggggaacaaaatcagtgagagagttctgtacctgctaggatggaggcaaagactgcaagtagcaacgccatgtcgagcatggaagcagctgaagacgccattctcaagctcgactcaacctgtgacatctgacctgttgttgcttcttgcagagcctaacggccac
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| CDS seq | atgtcacaggttgagtcgagcttgagaatggcgtcttcagctgcttccatgctcgacatggcgttgctacttgcagtctttgcctccatcctagcaggaacggcagcggttggagtatgctggggcatgagcggcgacaacctgccgccggcgagcaaggtcaccgagatgctccgcgagaacggcttcaccgtcgtgcgcctctacgcgccggacagcgccgcgctcgcggcgctcggcggcacgggcatccgcgtcgtcgtcggcgcgcccaactacgacctccccgccctggcgcacggcgggaccgccgccgcggccgcctggatccgcgagaacatccaggcctacccgacggtcctgttccggttcgtcgtcgtgggcaacgaggtcgccggcgccgacacgcagctcctcgtcccggccatggagaacgtccacgccgcgctcgcggcggccgggctgggacacatcaaggtgacgacgtcgatctcccaggccaccatcggcgtccacatcccgccgtccgccggcgagttcaccgacgaggcgaagccgttcatgagctacgtgatcccattcctggaacggacgcacgcgccgctgctggccaacctgtacccatacttcatctactcatacaacccggggggcatggacatcagcttcgcgctgttcacggcgagcggcgcggtggtgcaggacggggagtacgggtaccagaaccagttcgacgcgacggtggacgcgctgtacacggcggtggcgaagctcgggggagagaacgtgagggtggtggtgtctgagaccgggtggccgacggcgggcggcgtgggcgcgtcggtggagaacgccatgacattcaaccagaacctggtgaggcacgtccggaatggcacgccgcggcatcccgggaagaagacggagacgtacgtgttcgccatgttcaacgagaacctcaaggaggccggcgtggagcagaattggggcctcttctaccccagcaccgatagggtctaccccattagcttccatgcccgtatt
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| Protein seq | MSQVESSLRMASSAASMLDMALLLAVFASILAGTAAVGVCWGMSGDNLPPASKVTEMLRENGFTVVRLYAPDSAALAALGGTGIRVVVGAPNYDLPALAHGGTAAAAAWIRENIQAYPTVLFRFVVVGNEVAGADTQLLVPAMENVHAALAAAGLGHIKVTTSISQATIGVHIPPSAGEFTDEAKPFMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVVQDGEYGYQNQFDATVDALYTAVAKLGGENVRVVVSETGWPTAGGVGASVENAMTFNQNLVRHVRNGTPRHPGKKTETYVFAMFNENLKEAGVEQNWGLFYPSTDRVYPISFHARI |
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| Function | Lichenase-2 (Fragment) [UniProtKB/Swiss-Prot:P12257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0046650 | OsCMeo_01g0046650.01 | Chr01 | 42557483 | 42561312 | - | NAM | ||
| CDS seq | atgtcacaggttgagtcgagcttgagaatggcgtcttcagctgcttccatgctcgacatggcgttgctacttgcagtctttgcctccatcctagcaggaacggcagcggttggagtatgctggggcatgagcggcgacaacctgccgccggcgagcaaggtcaccgagatgctccgcgagaacggcttcaccgtcgtgcgcctctacgcgccggacagcgccgcgctcgcggcgctcggcggcacgggcatccgcgtcgtcgtcggcgcgcccaactacgacctccccgccctggcgcacggcgggaccgccgccgcggccgcctggatccgcgagaacatccaggcctacccgacggtcctgttccggttcgtcgtcgtgggcaacgaggtcgccggcgccgacacgcagctcctcgtcccggccatggagaacgtccacgccgcgctcgcggcggccgggctgggacacatcaaggtgacgacgtcgatctcccaggccaccatcggcgtccacatcccgccgtccgccggcgagttcaccgacgaggcgaagccgttcatgagctacgtgatcccattcctggaacggacgcacgcgccgctgctggccaacctgtacccatacttcatctactcatacaacccggggggcatggacatcagcttcgcgctgttcacggcgagcggcgcggtggtgcaggacggggagtacgggtaccagaaccagttcgacgcgacggtggacgcgctgtacacggcggtggcgaagctcgggggagagaacgtgagggtggtggtgtctgagaccgggtggccgacggcgggcggcgtgggcgcgtcggtggagaacgccatgacattcaaccagaacctggtgaggcacgtccggaatggcacgccgcggcatcccgggaagaagacggagacgtacgtgttcgccatgttcaacgagaacctcaaggaggccggcgtggagcagaattggggcctcttctaccccagcaccgatagggtctaccccattagcttccatgcccgtatt
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| Protein seq | MSQVESSLRMASSAASMLDMALLLAVFASILAGTAAVGVCWGMSGDNLPPASKVTEMLRENGFTVVRLYAPDSAALAALGGTGIRVVVGAPNYDLPALAHGGTAAAAAWIRENIQAYPTVLFRFVVVGNEVAGADTQLLVPAMENVHAALAAAGLGHIKVTTSISQATIGVHIPPSAGEFTDEAKPFMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVVQDGEYGYQNQFDATVDALYTAVAKLGGENVRVVVSETGWPTAGGVGASVENAMTFNQNLVRHVRNGTPRHPGKKTETYVFAMFNENLKEAGVEQNWGLFYPSTDRVYPISFHARI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.560158 | 4.059503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0944500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71474 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0942300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046720 | RBH | 0.0 | 0.0 | 3.712151 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046230 | RBH | 0.0 | 0.0 | 0.901774 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014730 | RBH | 0.262070 | 43.967777 | 8.630351 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045600 | SBH | 2.841192 | 3.242343 | 37.862839 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681200 | SBH | 3.643111 | 1.8056825 | 0.6814965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045140 | SBH | 0.074657 | 0.0 | 2.118684 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0683400 | RBH | 8.030187 | 4.879612 | 0.0504565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045530 | SBH | 0.241999 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045860 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045860 | SBH | 0.0 | 0.224157 | 4.562868 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045600 | SBH | 0.110860 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045980 | RBH | 0.0 | 0.0 | 0.629059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045740 | RBH | 0.0 | 0.000000 | 0.0 |
