Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0045860 | OGI:01121600 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:43062963-43064734 | ||||||||
| Gene Symbol | OsPR2, PR2, OsGlu1, Glu1, OsEGL2, Osg1, g1 | ||||||||||
| DNA seq | atcgatctgcatgcgaagtcctgcagcctccgtagcagacacgtacaacgtaccgagcaaccttagctagtggcgcctgaaaattattaagcgcttcaagatggcaaagcatggcgttgcttccgttttaacactggcattggtccttggagttgcggccattcctacaggtaataattgtatattgtcttaataaaattcggtttgtctaaaactcttaataagggatgtcctctcgTttgtttaaaacccattcaaatagttatggaaatttctgaaacaaattgacgacattcatagaaaatatgtatatactaattcactaaattttagatcctaacacaactcatcacacattatggtatAaaaaaagataaatacgaacgaaatttatcttcTtttttttcttaatgtggatggtgaaatttgaacttgatttttggtgtagtggtacatgttactgtactctatattattaatttgattaaattttttcttaactatttgtgttgaatttggaaaaaaaagttataagatggaatatcctctaaagggattaataatccactcccaaacaaaaaggagtctaatatatcaaatcaaacacagtggtgcaatctatcggcgtgtgctacggcgtgatcgggaacaacctgccgtcgccgagcgacgtcgtgcagctctacaagtccaacggcatcgactccatgcgcatctacttcccaagaagcgacatcctccaggccctcagcggctcaagcatcgccctcaccatggacgtcggcaacgatcagctcggctccctcgcctccgacccctccgccgccgccgccttcgtccagaacaacatccaggcgttcccgggcgtcaacttccgctacatcacggtcggcaacgaggtttccggcggcgacacgcagaacatcctcccggccatgcagaacatgaacaGCgccctctccgccgccggcctcggcaacatcaaggtgtcgacgtcggtgtcccagggcgtgaccgccggcttcccgccgtccgccggcacgttctccgcctcgcacatggggcccatagctcagtacctggcgagcaccggcgcgccgctgctcgccaacgtctacccctacttcgcctacgtgggcaaccaggcccagatcgacatcaactacgcgctcttcacgtcgccgggcacggtggtgcaggacggcggcaacgcgtaccagaacctgttcgacgccatcgtcgacacgttctactccgcgctggagagcgccggcgccgggagcgtcccgatcgtggtgtcggagagcgggtggccgtcggccggcggcacggcggcgagcgccggcaacgcgcagacgtacaaccagaacctgatcaaccacgtcgggcaggggacgcccaagaggcccgggagcatcgagacctacattttcgccatgttcaacgagaaccagaagggaggcgacgagacggagaggcacttcggcctcttcaacccggaccagtcgccggcatactccatcaatttctaagaagattgttctgagaagagatcgatcgatgatgaattaaacgtcgatcgatatagatatatacatacacgcgttccatatatagtttgggtttgaataagctttctgcctgcatattgcaaagctcaatgcatgcatgtaacggtgcagagacaaataatatgaacttgaataaagtttaccagacctattttcgcgtagtatgattaatgtctcatacagagcagaccatgtagcatg
More
|
||||||||||
| CDS seq | atgcgcatctacttcccaagaagcgacatcctccaggccctcagcggctcaagcatcgccctcaccatggacgtcggcaacgatcagctcggctccctcgcctccgacccctccgccgccgccgccttcgtccagaacaacatccaggcgttcccgggcgtcaacttccgctacatcacggtcggcaacgaggtttccggcggcgacacgcagaacatcctcccggccatgcagaacatgaacaGCgccctctccgccgccggcctcggcaacatcaaggtgtcgacgtcggtgtcccagggcgtgaccgccggcttcccgccgtccgccggcacgttctccgcctcgcacatggggcccatagctcagtacctggcgagcaccggcgcgccgctgctcgccaacgtctacccctacttcgcctacgtgggcaaccaggcccagatcgacatcaactacgcgctcttcacgtcgccgggcacggtggtgcaggacggcggcaacgcgtaccagaacctgttcgacgccatcgtcgacacgttctactccgcgctggagagcgccggcgccgggagcgtcccgatcgtggtgtcggagagcgggtggccgtcggccggcggcacggcggcgagcgccggcaacgcgcagacgtacaaccagaacctgatcaaccacgtcgggcaggggacgcccaagaggcccgggagcatcgagacctacattttcgccatgttcaacgagaaccagaagggaggcgacgagacggagaggcacttcggcctcttcaacccggaccagtcgccggcatactccatcaatttctaa
More
|
||||||||||
| Protein seq | MRIYFPRSDILQALSGSSIALTMDVGNDQLGSLASDPSAAAAFVQNNIQAFPGVNFRYITVGNEVSGGDTQNILPAMQNMNSALSAAGLGNIKVSTSVSQGVTAGFPPSAGTFSASHMGPIAQYLASTGAPLLANVYPYFAYVGNQAQIDINYALFTSPGTVVQDGGNAYQNLFDAIVDTFYSALESAGAGSVPIVVSESGWPSAGGTAASAGNAQTYNQNLINHVGQGTPKRPGSIETYIFAMFNENQKGGDETERHFGLFNPDQSPAYSINF |
||||||||||
| Function | Glucan endo-1,3-beta-glucosidase, acidic isoform [UniProtKB/Swiss-Prot:P49237] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0045860 | OsLiXu_01g0045860.01 | Chr01 | 43063670 | 43064734 | + | NAM | ||
| CDS seq | atgcgcatctacttcccaagaagcgacatcctccaggccctcagcggctcaagcatcgccctcaccatggacgtcggcaacgatcagctcggctccctcgcctccgacccctccgccgccgccgccttcgtccagaacaacatccaggcgttcccgggcgtcaacttccgctacatcacggtcggcaacgaggtttccggcggcgacacgcagaacatcctcccggccatgcagaacatgaacaGCgccctctccgccgccggcctcggcaacatcaaggtgtcgacgtcggtgtcccagggcgtgaccgccggcttcccgccgtccgccggcacgttctccgcctcgcacatggggcccatagctcagtacctggcgagcaccggcgcgccgctgctcgccaacgtctacccctacttcgcctacgtgggcaaccaggcccagatcgacatcaactacgcgctcttcacgtcgccgggcacggtggtgcaggacggcggcaacgcgtaccagaacctgttcgacgccatcgtcgacacgttctactccgcgctggagagcgccggcgccgggagcgtcccgatcgtggtgtcggagagcgggtggccgtcggccggcggcacggcggcgagcgccggcaacgcgcagacgtacaaccagaacctgatcaaccacgtcgggcaggggacgcccaagaggcccgggagcatcgagacctacattttcgccatgttcaacgagaaccagaagggaggcgacgagacggagaggcacttcggcctcttcaacccggaccagtcgccggcatactccatcaatttctaa
More
|
|||||||
| Protein seq | MRIYFPRSDILQALSGSSIALTMDVGNDQLGSLASDPSAAAAFVQNNIQAFPGVNFRYITVGNEVSGGDTQNILPAMQNMNSALSAAGLGNIKVSTSVSQGVTAGFPPSAGTFSASHMGPIAQYLASTGAPLLANVYPYFAYVGNQAQIDINYALFTSPGTVVQDGGNAYQNLFDAIVDTFYSALESAGAGSVPIVVSESGWPSAGGTAASAGNAQTYNQNLINHVGQGTPKRPGSIETYIFAMFNENQKGGDETERHFGLFNPDQSPAYSINF
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0045860 | OsLiXu_01g0045860.02 | Chr01 | 43062963 | 43064696 | + | IsoSeq | ||
| CDS seq | tcgatctgcatgcgaagtcctgcagcctccgtagcagacacgtacaacgtaccgagcaacctt |
|||||||
| Protein seq | SICMRSPAASVADTYNVPSNL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.224157 | 4.562868 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0940700 | RBH | 4.690226 | 6.562096 | 11.318640 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71340 | RBH | 2.919474 | 4.092577 | 2.681872 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0940700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046590 | RBH | 0.0 | 0.0 | 2.705025 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046100 | RBH | 0.085592 | 0.0 | 4.604615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046490 | RBH | 3.738228 | 2.010207 | 17.593689 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046060 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045600 | RBH | 2.841192 | 3.242343 | 37.862839 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0679800 | SBH | 1.9356435 | 2.065946 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045140 | RBH | 0.074657 | 0.0 | 2.118684 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0682200 | RBH | 2.5094515 | 7.211031 | 0.0078575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045620 | RBH | 0.154803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045530 | RBH | 0.241999 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014800 | RBH | 3.810600 | 15.866119 | 5.279232 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045600 | RBH | 0.110860 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045920 | SBH | 0.0 | 0.0 | 1.457413 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045640 | RBH | 0.0 | 0.0 | 3.122071 |
