Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0013520 | OGI:01032850 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:11311024-11315580 | ||||||||
| Gene Symbol | OsSK12/OsGSK3, OsSK12, OsGSK3, SK12, GSK3 | ||||||||||
| DNA seq | atgagcggcggcggctacagagattggaatccccttcccgattggaatcgggcggagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctcctcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgggcttgccctagcccgccgcatcgccgacgtactacgcccgctcggctccaggctccagatccggcctccagggcgtgcccgctgctggacggcgctctcccgcgtccgtggctacctcctcctccgggtttgcgttgccgtcgccgaagcgatccgttggtatctctctctctctctctatctatctctgcttggttagttatttgttttgcaaaagcgattcgtttggaatctccatctgcttggttagttattgttcggaatggtgtctttgtcggtaattggtaccttaaaaaagagagtggtgtggttgctttggattggaaaaaccaaggagagttctttacactataaggtgagaggcgaattaccgagcagggataattcggattgtgctgctttgaattggaatgccgaagaggctctatgtgctataacagtacggctcaaatttctgagcagggagaattcagctatttaggttctgtgtcatgtacttttgcttgttagtgtgtgggggcggaacctcacacatttctttgtagtgtataaacctaagaacttagaaagttcgagctttggtgaagtccttcatgttaatacatgtcgaatgtgaggatgggggcgtctggggggtactatgctcaaatctgaaaaatgtgttatatacactatcgcatgagaccaatgaaccacacagatagtagacatctgtacaaaagggtacactttcattacagaagatcatgtgtacaacatgtctacataaaactagcctcaaaagatcctccaaagtgagggtctcaagcaaaattggccccatctccttttaaggactaaatatgatgcattgcctaaaagcccccaatttggatgtaaggtttattgacgattaaaagtatgagttctaataagtagctgttagttaagttatgcttttaattttgaccaaagtttgatgatctggattcggatgaaaagtctccagctttagtatatttctttgcagtacttctgtatacccaactgtcaagatattcatttctcaaaacttgggaagatatagtgtttcatagggtcatcgatatacgaattgagcgcaacaaagctaatatgagcttgttttatttcttatcaaattgtttggtgtaaccaagtgctcagcagtttggcatcatgggtacctgaagatccaactatgttttggcccttctaattcataggagttaggactaaccattaacatttttttatttagtagatttgcagggatatatgtttctaatgtgcaattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcaggtggattgtgtgtagctctgtaacaaaggatcttggtccataggagtgaaccagaaggtacaaacttcttggctattatgacatcggtgggtctagtagattcttcatcaggtttcccggaaacgagtactagtggagccactgatcgtctgacagatgatatcagcgagatgagcataagagataaggtaattttattctggaaatcaatcacaatattactcaattcttatgatgataccatcctctttgactcttattgacatatgtaccaggaagttgaagctgtagtggtcagtggcaatagtatggacataggtcacactattgtgacaactgttggtggaagaaatgggcagccaaagcaggtactgacatagcattggtctatggtgatcactactatgtttgtactgtagtacttcatgttgcaatagatagaatttatgtggcaaacactaccacattattaaaaaattgccgttatgtgccattatttgtctatttctaaaaacttatagtactggatttttattggattgcagacaattagttacatcgcagagcgtgctgttgggcgtggttcatttggagttgtcttccaggtgggccattggtatatgccattctgtcattacctttctgtttagagattactaattaaattatctttgacaggctaagtgtctagaaactggtgagagagttgctgtaaagaaagttcttcaagatgcgagatacaagaaccgggagctgcaaacgatgcaagttctcgatcacccaaatgttgcatgcttgaagcattacttttgctcgactactgcgaaggaggagctatacctcaacttggttcttgaatatgtgccagaaactgttcatcgtgttattagacattacaataagatgagccaacgcatgccattgatttatgttaaactttatatgtaccaggtaaggttgcaggcgccttacaacacaactatagctatgcactattagttttgataatgattttaactgaaaactgttcattgtcatttctgttctttcagatttgtagggctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtatgtactgtggttaactggttatcatttgtctgagtagtgcatactagcaacattattttccgtatatgataatttcagcttaatgaggtctgacaagatattcctgtcataggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtatgatcccttgtatcaattagagtaatcttcactcacatatgttttcataaaaaaaggtcacatatcttttataagctatctgaaattcttaaatttaccttgccgtgtccataggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcaggtaagaagtcaacctagttgtcatcatacattacccaatttcttgaagcaacttctctgaattatttgctgttggttagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaaggtaacatctgatttagtttagtggaatattattctatgtagtttcccccttttcttttagctcatgcaggagacttactgtacttcattcaggtactgggtactccaacaagggaagaaatcaaacatatgaatccgaactacactgagtttaagttcccccaaatcaaagctcacccatggcacaaggtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcagtaagtattaatgcatatatcaggaaatctcttgtaaatgtttctatgtactcattttacatcttcctttttttctcctcgcaccagttggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtggtaagttaagatttttgtcaatgccagaccaactgaaacaccctgacagcaatatcctgatttgctaactactgaacttgaacagagctgaaaggagcatcaatggaatttcttgtgaagttggttccacagcatgctaagaagcaatgtgccttcttaggattatgagcagacagttcatacactaatcgggtattacgttggtctacttggttccgtagaacagcatggcctgcagtattattgaatgggccctaattttgttctacgtgcaccctgcttgggcatgccttctaccatcatattctgtaaagcagatgaagacatggagtgagtggttattgattggggcttgtatattggtctgcccttgacttgagaactttattcactctgctgtatcaagcaagaaagaacacgtatgtatgcttgagccatatttcattccagagcctctatcaggtttcaccgaccatcagatttaagtcttccagtttgtagggctaagccaaaaaagttctatgtgtgaagagttggagacatctgtttggttacaagctatttgattgtatttgatcattcttttgtattaacactctgataaacttacatgagttaattctattgttatgtgatatagttgtgtgccacttttaaacacctaaacaactctgttcaatgttgaaatgtttggcatgtatcaacatatcacctcattatttcgaggttgattttgtac
More
|
||||||||||
| CDS seq | atgagcggcggcggctacagagattggaatccccttcccgattggaatcgggcggagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctcctcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgggcttgccctagcccgccgcatcgccgacgtactacgcccgctcggctccaggctccagatccggcctccagggcgtgcccgctgctggacggcgctctcccgcgtccgtggctacctcctcctccgggtttgcgttgccgtcgccgaagcgatccgttggagtgaaccagaaggtacaaacttcttggctattatgacatcggtgggtctagtagattcttcatcaggtttcccggaaacgagtactagtggagccactgatcgtctgacagatgatatcagcgagatgagcataagagataaggaagttgaagctgtagtggtcagtggcaatagtatggacataggtcacactattgtgacaactgttggtggaagaaatgggcagccaaagcagatttgtagggctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcattggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtgagctgaaaggagcatcaatggaatttcttgtgaagttggttccacagcatgctaagaagcaatgtgccttcttaggattatga
More
|
||||||||||
| Protein seq | MSGGGYRDWNPLPDWNRAERREREERSRTRVSEVKGGDFAHRPPPRSNPNPASSSSSSSPRADLAPLPRRSCGLALARRIADVLRPLGSRLQIRPPGRARCWTALSRVRGYLLLRVCVAVAEAIRWSEPEGTNFLAIMTSVGLVDSSSGFPETSTSGATDRLTDDISEMSIRDKEVEAVVVSGNSMDIGHTIVTTVGGRNGQPKQICRALAYIHNCVGVCHRDIKPQNILVNPHNHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPVFPGDSGVDQLVEIIKIFHKRMPSEAVDLVSRLLQYSPHLRCSALEVLIHPFFDELRDPNARLPNGRTLPPLFNFKPRELKGASMEFLVKLVPQHAKKQCAFLGL |
||||||||||
| Function | Shaggy-related protein kinase epsilon [UniProtKB/Swiss-Prot:Q8VZD5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0013520 | OsCMeo_01g0013520.01 | Chr01 | 11311024 | 11315009 | + | NAM | ||
| CDS seq | atgagcggcggcggctacagagattggaatccccttcccgattggaatcgggcggagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctcctcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgggcttgccctagcccgccgcatcgccgacgtactacgcccgctcggctccaggctccagatccggcctccagggcgtgcccgctgctggacggcgctctcccgcgtccgtggctacctcctcctccgggtttgcgttgccgtcgccgaagcgatccgttggagtgaaccagaaggtacaaacttcttggctattatgacatcggtgggtctagtagattcttcatcaggtttcccggaaacgagtactagtggagccactgatcgtctgacagatgatatcagcgagatgagcataagagataaggaagttgaagctgtagtggtcagtggcaatagtatggacataggtcacactattgtgacaactgttggtggaagaaatgggcagccaaagcagatttgtagggctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcattggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtgagctgaaaggagcatcaatggaatttcttgtgaagttggttccacagcatgctaagaagcaatgtgccttcttaggattatga
More
|
|||||||
| Protein seq | MSGGGYRDWNPLPDWNRAERREREERSRTRVSEVKGGDFAHRPPPRSNPNPASSSSSSSPRADLAPLPRRSCGLALARRIADVLRPLGSRLQIRPPGRARCWTALSRVRGYLLLRVCVAVAEAIRWSEPEGTNFLAIMTSVGLVDSSSGFPETSTSGATDRLTDDISEMSIRDKEVEAVVVSGNSMDIGHTIVTTVGGRNGQPKQICRALAYIHNCVGVCHRDIKPQNILVNPHNHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPVFPGDSGVDQLVEIIKIFHKRMPSEAVDLVSRLLQYSPHLRCSALEVLIHPFFDELRDPNARLPNGRTLPPLFNFKPRELKGASMEFLVKLVPQHAKKQCAFLGL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0013520 | OsCMeo_01g0013520.02 | Chr01 | 11311073 | 11315580 | + | IsoSeq | ||
| CDS seq | gcggagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctcctcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgggcttgccctagcccgccgcatcgccgacgtactacgcccgctcggctccaggctccagatccggcctccagggcgtgcccgctgctggacggcgctctcccgcgtccgtggctacctcctcctccgggtttgcgttgccgtcgccgaagcgatccgttggtggattgtgtgtagctctgtaacaaaggatcttggt
More
|
|||||||
| Protein seq | AERREREERSRTRVSEVKGGDFAHRPPPRSNPNPASSSSSSSPRADLAPLPRRSCGLALARRIADVLRPLGSRLQIRPPGRARCWTALSRVRGYLLLRVCVAVAEAIRWWIVCSSVTKDLG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 11311400 | 11312629 | + | OsCMeo_01g0013520.02 | OsCMeo_01g0013520.02,OsCMeo_01g0013520.01 | All |
| SE | Chr01 | 11314272 | 11314568 | + | OsCMeo_01g0013520.02 | OsCMeo_01g0013520.02,OsCMeo_01g0013520.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.163116 | 19.613476 | 28.034658 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0205700 | SBH | 4.081882 | 3.113811 | 8.362340 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19150 | SBH | 3.007986 | 3.295064 | 2.899614 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0205700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013500 | SBH | 3.491421 | 45.104839 | 14.526121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013260 | SBH | 1.089301 | 11.074183 | 9.887589 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002490 | RBH | 3.010771 | 34.114986 | 42.112541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012970 | SBH | 1.189869 | 0.511952 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013080 | SBH | 20.997519 | 19.150070 | 28.654154 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0179700 | SBH | 21.279008 | 45.2656745 | 31.9813585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013030 | SBH | 1.434021 | 1.182064 | 4.114459 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0177900 | SBH | 20.00107 | 38.030603 | 26.1712075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013010 | SBH | 0.973843 | 0.339632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013110 | SBH | 2.134248 | 24.815758 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013070 | SBH | 17.534914 | 28.212914 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013170 | SBH | 3.531990 | 2.261736 | 3.537131 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012860 | SBH | 1.701100 | 8.372252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013160 | RBH | 2.834701 | 6.298989 | 7.043062 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012930 | SBH | 5.466112 | 35.103577 | 21.511328 |
