Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0205700 | OGI:01018800 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:5774293-5776922 | ||||||||
| Gene Symbol | Orysa;CKL4, GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21, OsSK12/OsGSK3, OsSK12, OsGSK3, SK12, GSK3 | ||||||||||
| DNA seq | GAAGGAAAGAGGGTTCATTGCGATTGGGATTGGCATTTACATGATGAAAGAGCAAACAAAAACAGGGAGCAGCTACACTACTGTAGGGCAATGCTAAGGATCACAAAATGGGAAGAAACCAAAATGAAAGGAGAAAAAAAAAAGAAGGAAAGCAGGGTTCCCTAGCTTAACATGTCTCTCAGTCTCCACCAACTACATTTATCCTTAACCTTACCTACTACTCAACCAGCATGCCCCGTCACGTACTTAACACCAGCAGCAGCAGCACGCATTTCTCCATGGTTAGATAATTTACATAATTGTACTTCTTCTCTGGTACTGAGTCCTTGCGGAAATGGCTTGACGGATGGATGGATCATGGAACATGGATGGTGCAATCTGAGATGGAGTCCAAGTCCAGGACAATGGAGTCATCTAGGATTGCAATGTCCAGCTCATGGAAAAATAAACGAACAAAACGGTGGCGTCGCGGTGCCCTTTAGCTCCCAGCATGCGCAAAGTTGAGGCCATGTTGCCGTCTGATATGATCCGGTATGAGCCTGTGGATGAGTTCTGGAGAGGCGCTGGCTAGCTGCATACCAGAAATGAGCATTGATAAGCATCCATGACAGGTAAATATAAATGTACCATAAAAAGCGACTGTTTGAAAATGTTCTCGTTTACTTACTTCATGCTTGAAGTTGAACAGAGGAGGGAATGGACGACCATTTGGCAGGCGTGCATTGGGCTCTCGTAGCTCATCAAAGAAGGAATGTGCACATGCGTCAAGCTGCATATAATCAACCAAATGCTAAGCTCTTTGAAAATGTCCAGCATGCTGCTTTAGAGATTATACTGTTTTCCAGCTAAAGCATAAGCTTTAAACAATTAACAGCAACTTTTTCAAGTGGAGCACTAACAACTATATTTAACAGGCACATGCGACTGTATGAAAGTTGCACTCACTCTTCACCAGCCAACACACCAATTTGGTTTTGGACCACTGGATATTATAATTACAATGACCATGCAGGACCAGGGATCCATCAATCTACTTCCATAAGGGACCTCAACAGAAACATTTCGTTTATTGTTCTTGACACACGGTCTATGAATATTTGACTGTAACAGCTAACAACACTTGAAATGAAATGCTAAAATAAGCAAATCCATGTAAATAATCATTATCCTAGCGCTTAGCGAAAACAATAGATTTATAGATAATATAAAACTAAGCAAACGAAAGAAAACTCACAGCAGTGCAGCGTAGACTTGGTGAATATTGGAGAAGACGGGAAGCAAGGTCTATGGCTTCTGGAGGCATTCTCTTGTGGAAAATCTGGTGGTAAGCGAAAGAACAACAGATGGATCAGTTAAGCAGCTGCAGATACATTTTTTTTATTTCAAATTAAACATGATGCAGAAACTGGTTTTGAAGTGGCCTACAATGCCCTGCAAGTAAAATGGTATGAGGAAGGTGATCCAATATAAGAAAACATGGCTACCTTGTGCCAAGGATGAGCCTTAATCTGAGGAAATTTGAACTCAGTATAGTTGGGGTTCATGCATCGTATTTCCTCACGGGTTGGAGTACCAAGAACCTGCCATAATATCAAGTTAACACAAGAAATACCCGTGGCAAAAAAAAAAATGTAGCTTGCACAACATCATGCAATACCTTGATTATCTCTACTAGCTGGTCAACAGCACTCTCTCCAGGAAACAGTGGCTGACAAATACACATTATGAAATATAATCAGAATAACATCACAGCATAATCTAATCAAGGAACCTGAATGTTGCAGTTCCTTAGATAAAGATATAGTGACTAACCTGACCAAGAAGTAACTCTGCAAGAACGCATCCAGCTGACCATATGTCAATTGAAGTTGTATACTCGGTTGCACCAAATATGAGCTCAGGAGCACGATAATAGCGAGAGCAAATGTATGATATGTTCGGTTCACCAGGAACCTGGTGGAATAGTACAAGGAGATCATCAATCTATTTGTTAAAATAGCAAAATGAAGAAATAACAGAACTAGGGAAGAGAGGCCAACAGTTATAATCCAAGCTCAGGAATTCATCATTATAGTCCTAGCTCAGCAACTTTGCATCCAACTTAATAAACTTAACAATCCTTCGACATAATAACAGCACATGATAAAACCAATTTGGAAATATTGATCATGATAGGCAATTTCTTTTATTAACTATTGAGCTATCTAAAAAAGTCTATCCCAGCACAGTGCAAATTTTAACTTCTATCACAAATCAATCATGAAAGGCAAAAGCAGCATATCTACACGTAAAAGCAACATGACGAAATAAACCACTTATGCTGTCAACATTATGACTAGCCTACCACTAGAATAATTTCAGCATACATCAAACCACTGAGAAATTACTCTTAAGGGTGGAAATCAACATACCAGAACCTTTGCACTTCCAAAGTCACATAGCTTGACTTGATGAGTGAGAGGATCAACCTGTATCAGCAAGCAATTAGAGACCAGTTCAAAACAAACAACCAAGCAAGAGAAGTAATGTAGCCTTGTTCACATAAGTCATACCAAAACATTTTGTGGTTTCACATCCCTGTGGCAGACTCCTGGAACAGTATGAATATAAGCTAACCCTCTGAAAAGCTG
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| CDS seq | CAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCCACTGTTTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAAGGTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAACTAGCCAGCGCCTCTCCAGAACTCATCCACAGGCTCATACCGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAA
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| Protein seq | QLFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKVLVPGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCTALDACAHSFFDELREPNARLPNGRPFPPLFNFKHELASASPELIHRLIPDHIRRQHGLNFAHAGS |
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| Function | Shaggy-related protein kinase GSK1 [UniProtKB/Swiss-Prot:Q9LWN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0205700 | Os01t0205700-01 | Chr01 | 5774293 | 5776922 | - | irgsp1_rep | ||
| CDS seq | CAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCCACTGTTTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAAGGTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAACTAGCCAGCGCCTCTCCAGAACTCATCCACAGGCTCATACCGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAA
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| Protein seq | QLFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKVLVPGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCTALDACAHSFFDELREPNARLPNGRPFPPLFNFKHELASASPELIHRLIPDHIRRQHGLNFAHAGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0205700 | RBH | 4.081882 | 3.113811 | 8.362340 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10840 | RBH | 2.207225 | 1.529049 | 1.397771 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0207500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007790 | RBH | 0.743542 | 23.615110 | 10.232825 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007430 | RBH | 0.710665 | 9.361385 | 3.056688 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007760 | RBH | 1.187239 | 20.247692 | 12.493056 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007280 | RBH | 0.282289 | 1.304031 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007430 | RBH | 3.831124 | 42.234440 | 26.420216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0095000 | RBH | 10.0873705 | 20.23822 | 68.5155335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007340 | RBH | 0.588111 | 2.404806 | 1.911633 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0137700 | SBH | 26.5279505 | 20.065677 | 74.285225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007200 | RBH | 0.328458 | 0.487409 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007390 | RBH | 0.405565 | 31.052942 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007390 | RBH | 7.095547 | 56.525204 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007390 | RBH | 1.035505 | 3.338621 | 1.445907 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007310 | RBH | 0.373870 | 12.904523 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007400 | RBH | 0.366807 | 7.042953 | 5.123906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007210 | RBH | 0.907285 | 38.219273 | 7.774730 |
