Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0013170 | OGI:01032850 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:10913769-10918342 | ||||||||
| Gene Symbol | OsSK12/OsGSK3, OsSK12, OsGSK3, SK12, GSK3 | ||||||||||
| DNA seq | gggcggagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgcgggcttgccctagcccgccgcatcgccgacgtactacgcccgctcggctccaggctccagatccggcctccagggcgtgcccgctgctggacggcgctctcccgcgtccgtggctacctcctcctccgggtttgcgttgccgtcgccgaagcgatccgttggtatctctctctctctctctctctctctctatctatctttctctgtttgggttagttatttgttttgcaaaagcgattcgtttggaatctccatctgcttggttagttattgttcggaatggtgtctttgtcggtaattggtaccttAaaaaagagagtggtgtggttgctttggattggaaaaaccaaggagagttctttacactatacggtgagaggcgaattaccgagcagggataattcggattgtgctgctttgaattggaatgccgaagaggctctatgtgctataacagtacggctcaaatttctgagcagggagaattcagctatttaggttctgtgtcatgtacttttgcttgttagtgtgtgggggcggaacctcacacatttctttgtagtgtataaacctaagaacttagaaagttcgagctttggtgaagtccttcatgttaatacatgtcgaatatgaggatgggggcgtctgggggatactatgctcaaatctgaaaaatgtgttatatacactatcgcatgagaccaatgaaccacacagatagtagacatctgtacaaaagggtacactttcattacagaagatcatgtgtacaacatgtctacataaaactagcctcaaaagatcctccaaagtgagggtctcaagcaaaattgcccccatctccttttaaggaataaatatgatgcattgcctaaaagcccccaatttggatgtaaggtttattgacgattaaaagtatgagttctaataagtagctgttagttaagttatgcttttaattttgaccaaagtttgatgatctggattcggatgaaaagtctcctgctttagtatatttctttgcagtacttctgtatacccaactgtcaagatattcatttctcaaaacttgggaagatatagtgtttcatagggtcatcgatatatgaattgagcgcaacaaagctaatatgagcttgttttatttcttatcaaattgtttggtgtaaccaagtgctcagcagtttggcatcatgggtacctgaagatccaactatgttttggcccttctaattcataggagttaggactaaccattaacatttttttatttagtagatttgcagggatatatgtttctaatgtgcaattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcaggtggattgtgtgtagctctgtaacaaaggatcttggtccataggagtgaaccagaaggtacaaaacttcttggctattatgacatcggtgggtctagtagattcttcatcaggtttcccggaaacgagtactagtggagccactgatcgtctgacagatgatatcagcgagatgagcataagagataaggtaattttattctggaaatcaatcacaatattactcaattcttatgatgataccatcctctttgactcttattgacatatgtaccaggaagttgaagctgtagtggtcagtggcaatagtatggacataggtcacactattgtgacaactgttggtggaagaaatgggcagccaaagcaggtactgacatagcattggtctatggtgatcactactatgtttgtactgtagtacttcatgttgcaatagatagaatttatgtggcaaacactaccacattattaaaaaattgccgttatgtgccattatttgtctatttctaaaaacttatagtactggatttttattggattgcagacaattagttacatcgcagagcgtgctgttgggcgtggttcatttggagttgtcttccaggtgggccattggtatatgccattctgtcattacctttctgtttagagattactaattaaattatctttgacaggctaagtgtctagaaactggtgagagagttgctgtaaagaaagttcttcaagatgcgagatacaagaaccgggagctgcaaacgatgcaagttctcgatcacccaaatgttgcatgcttgaagcattacttttgctcgactactgcgaaggaggagctatacctcaacttggttcttgaatatgtaccagaaactgttcatcgtgttattagacattacaataagatgagccaacgcatgccattgatttatgttaaactttatatgtaccaggtaaggttgcaggcgccttacaacacaactatagctatgcactattagttttgataatgattttaactgaaaactgttcattgtcatttctgttctttcagatttgtagagctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtatgtactgtggttaactggttatcatttgtctgagtagtgcatactagcaacattattttccgtatatgataatttcagcttaatgaggtctgacaagatattcctgtcataggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtatgatcccttgtatcaattagagtaatcttcactcacatatgttttcataaaaaaaggtcacatatcttttataagctatctgaaattcttaaatttaccttgccgtgtccataggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcaggtaagaagtcaacctagttgtcatcatacattacccaatttcttgaagcaacttctctgaattatttgctgttggttagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaaggtaacatctgatttagtttagtggaatattattctatgtagtttcccccttttcttttagctcatgcaggagacttactgtacttcattcaggtactgggtactccaacaagggaagaaatcaaacatatgaatccgaactacactgagtttaagttcccccaaatcaaagctcacccatggcacaaggtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcagtaagtattaatgcatatatcaggaaatctcttgtaaatgtttctatgtactcattttacatcttcctttttttctcctcgcaccagttggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtggtaagttaatatttttgtcaatgccagaccaactgaaacaccctgacagcaatatcctgatttgctaactactgaacttgaacagagctgaaaggagcatcaatggaatttgttgtgaagttggttccacagcatgctaagaagcagtgtgccttcttaggattatgagcagacagttcatacactaatcgggtattacgttggtctacttggttccgtagaacagcatggcctgcagtattattgaatgggccctaattttgttctacgtgcacccttcttgggcatgccttctaccatcatattctgtaaagcagatgaagacatggagtgagtggttattgattggggcttgtatattggtctgcccttgacttgagaactttattcactctgctgtatcaagcaagaaagaacacgtatgtatgcttgagccatatttcattccagagcctctatcaggtttcaccgaccatcagatttaagtcttccagtttgtagggctaagccaaaaaagttctatgtgtgaagagttggagacatctgtttggttacaagctatttgattgtatttgatcattcttttgtattaacactgataaacttacatgagttaattctattgttatgtgatatagttgtgtgccacttttaaacacctaaacaactctgttcaatgttgaaatgtttggcatgtatcaacatatcacctcattatttcgaggttgattttgtacacctgatatctgttagcttgaatgcttgattacaagcaaatgattaaatattttatataccg
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| CDS seq | atgcaagttctcgatcacccaaatgttgcatgcttgaagcattacttttgctcgactactgcgaaggaggagctatacctcaacttggttcttgaatatgtaccagaaactgttcatcgtgttattagacattacaataagatgagccaacgcatgccattgatttatgttaaactttatatgtaccagatttgtagagctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaaggtactgggtactccaacaagggaagaaatcaaacatatgaatccgaactacactgagtttaagttcccccaaatcaaagctcacccatggcacaagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcattggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtgagctgaaaggagcatcaatggaatttgttgtgaagttggttccacagcatgctaagaagcagtgtgccttcttaggatta
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| Protein seq | MQVLDHPNVACLKHYFCSTTAKEELYLNLVLEYVPETVHRVIRHYNKMSQRMPLIYVKLYMYQICRALAYIHNCVGVCHRDIKPQNILVNPHNHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPVFPGDSGVDQLVEIIKVLGTPTREEIKHMNPNYTEFKFPQIKAHPWHKIFHKRMPSEAVDLVSRLLQYSPHLRCSALEVLIHPFFDELRDPNARLPNGRTLPPLFNFKPRELKGASMEFVVKLVPQHAKKQCAFLGL |
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| Function | Shaggy-related protein kinase alpha [UniProtKB/Swiss-Prot:P43288] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013170 | OsLiXu_01g0013170.01 | Chr01 | 10913769 | 10918342 | + | NAM | ||
| CDS seq | atgcaagttctcgatcacccaaatgttgcatgcttgaagcattacttttgctcgactactgcgaaggaggagctatacctcaacttggttcttgaatatgtaccagaaactgttcatcgtgttattagacattacaataagatgagccaacgcatgccattgatttatgttaaactttatatgtaccagatttgtagagctttggcatacattcataactgtgtgggagtatgccacagagatataaagccacagaatatattggtgaatccacataatcatcagttgaaattgtgtgactttggcagtgcaaaagtcctggtgaaaggggaaccaaatatttcatatatctgttctagatactacagagccccagaactcatatttggggctacagagtacacgacagctattgatgtgtggtctgctggctgtgttcttgctgaactacttctagggcagcctgtttttcctggtgacagtggcgtcgaccaacttgttgaaattatcaaggtactgggtactccaacaagggaagaaatcaaacatatgaatccgaactacactgagtttaagttcccccaaatcaaagctcacccatggcacaagatctttcataaaagaatgccatctgaagctgtagatcttgtgtctcggcttctgcagtactcaccacacctccggtgcagtgcattggaggtgttaattcatccattcttcgatgaactacgagatccaaatgctcgcttaccaaatggccgtactcttcccccactattcaatttcaagcctcgtgagctgaaaggagcatcaatggaatttgttgtgaagttggttccacagcatgctaagaagcagtgtgccttcttaggatta
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| Protein seq | MQVLDHPNVACLKHYFCSTTAKEELYLNLVLEYVPETVHRVIRHYNKMSQRMPLIYVKLYMYQICRALAYIHNCVGVCHRDIKPQNILVNPHNHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPVFPGDSGVDQLVEIIKVLGTPTREEIKHMNPNYTEFKFPQIKAHPWHKIFHKRMPSEAVDLVSRLLQYSPHLRCSALEVLIHPFFDELRDPNARLPNGRTLPPLFNFKPRELKGASMEFVVKLVPQHAKKQCAFLGL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0013170 | OsLiXu_01g0013170.02 | Chr01 | 10913774 | 10918175 | + | IsoSeq | ||
| CDS seq | gagagacgggagagagaggagaggagtcgaactagggttagtgaggtgaaggggggcgattttgctcatcgccctccgcctagatcgaatccgaatcccgcctcctcctccccccgcgccgatcttgccccgctccctcgccgcagctgcgcgggcttg |
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| Protein seq | ERREREERSRTRVSEVKGGDFAHRPPPRSNPNPASSSPRADLAPLPRRSCAGL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 10915833 | 10916238 | + | OsLiXu_01g0013170.01 | OsLiXu_01g0013170.01,OsLiXu_01g0013170.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.531990 | 2.261736 | 3.537131 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0296100 | RBH | 4.466267 | 4.933455 | 11.366694 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19150 | RBH | 3.007986 | 3.295064 | 2.899614 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0296100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013500 | RBH | 3.491421 | 45.104839 | 14.526121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013260 | RBH | 1.089301 | 11.074183 | 9.887589 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010710 | SBH | 7.913007 | 38.497990 | 43.658024 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012970 | RBH | 1.189869 | 0.511952 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013080 | RBH | 20.997519 | 19.150070 | 28.654154 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0179700 | RBH | 21.279008 | 45.2656745 | 31.9813585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013030 | RBH | 1.434021 | 1.182064 | 4.114459 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0177900 | RBH | 20.00107 | 38.030603 | 26.1712075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013010 | RBH | 0.973843 | 0.339632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013110 | RBH | 2.134248 | 24.815758 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013070 | RBH | 17.534914 | 28.212914 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002490 | RBH | 0.828198 | 3.257697 | 3.125196 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012860 | RBH | 1.701100 | 8.372252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010350 | SBH | 2.664978 | 13.785054 | 19.993263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012930 | RBH | 5.466112 | 35.103577 | 21.511328 |
