Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0012740 | OGI:08000190 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:17353646-17356709 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTGTATTTTGTGTTGGAGAATATATTAGTAGTACAACAGGGATGTGCTTGTAAGATAATGGAGTAAATCTTTAGGAATGTGAAGAATAAGTACCAATTTTATTATGTAGATTGGTCAGGCAGATTGGTATGCAATGCAGTTTGTAGCTCTATGCTGTTTGGAGTGGTCCATAAGAAATTGCAGTTAGTGTTAAAGGCAAAAGTATTGCAAATCTCGAGTGGATTTATCTATCACAAAAATCAATATAAAGATAATGAAATGTGTGGTGTTATAAAATAATGTATACCCTTTGGTTCCTTCAATGGAGTCTTCAGGAAAGTCAGCCTTTCCCTCTGTATGCTGTAGTTTTTTGCTGCATGAAATAGTTCCAAAAATATTGTAGTCAGTATTATAGTTGAGTTATGTTATTCTATGTATTTTCCAAAGTAGTACATGCCCTTCTTTGTAATGTTTGAGAACAGGGAGATCTAGTTTTTTGGTAGTGTAAAAGGAAAAATGTTCCAAGGTTGGTTGTGAGTTGATATTTGTTAATTAGAAAAGGCAATATAAATGGGGTTATAAAATATACCTTCTGGTTTCCTCCATGGAGTCTTTAGTGAAATCAATGGCTCTCTTTGTAGTTGAGCTGCAGTAATGGATAATAATCATATGAATGATTTTATTAAGCATAATTTTTTTGTATATTTACCTGGTTTTTTCAGTTGGAGTTTTATCAGCCAAAGATATTTCAGGAGGTGTACTTTTGCTTGATGCTCCTGTATTATGAATAGTTGTGCTGAAATTTATTTGGCATCAGCAGTTAGTACTATATATCCAATGTGATGTAGAGGCTGGGTTTTAATGAAAATCCTTAATCTAAAAAAAATTATGGTGTTGTACAAATGTAATGAATAGAACATTTGATAGAACAACAAACCTTGGGTTATCTGTATGTGGTGCAGGTGGTGGAAGCTGTAGTAACTCTTTGTTCTTCAAAGGCATTAGTTTTATATTTTAATTTAATTAGTTTGAAATATTTGAAGTAATATGGAACAGGATATCTGAAGTAATATGGAACAATAGTATTTACTAACCTCTCCATCTGTGAGCATAGGGACCGACATAGTAGGCTCAATTGTGAAACTCTTCTTAAGCACATAGCTGATAGGGAACTTAGAAGATGTATCAGTATTCATCCCTATAGCAAAAATTTTTGTTTTACCAATGGCATTATTGAGTGTTGTTGGATGATCGTCCGGGTCTATCTTCATGTTTTGGGAAGCTTGGGCTGCATCAAGCTCTACCAAATCTTCAGCAACAAAAGAAAATGCTACTGCATCTAAACTCCCTGATTCATCTGTAATCGTGACAGGGAGTTTGTACCTGAAGCATTGTACATTAGTTAGATACATCTAGAGTGGTTAGCGTTACAGTAAACTATTTTAGTTCTTCGAATGAATGTATAAGAGTAGGAGATTGTACATTGGTTTGCGGAATGAAACTTCGCAAGCACATCTTGGTGAATCAGAATTGTTGCTGTACCCTTTATCACAACGATGGCATCCTATGTAATACCATTTAATTGATGACAGTATGGCAGTTATTTTTGCAGTAGCACTGTATGTAGCTCCACCCTTATGTAATAAAAAGTATTAAATCTTGGCGAAAGGAATCCATGGCATGGTAATAACAATATAGTTTTTTTTCTTTTGTATTGAGTTGTACCTGAAAGGCTGAAATAGGCATAGCTGATATCTCACTTAAGGTGTACATTTTTCCTGCTGCTTGGATCGGGGTTAAACGTATAACCTTAGGGAGTTGTTGCTCAAGAGTTGGACGTTCCCATTGGTAGCTTCAAATTGCAAAGAGATAGGTTGGCATCTTTTGACGTGAAATATAATACATATTGAACAGGAATATTCAAGTGCAAATGGTTTGAAGGGGTTAAAGAGAATTACCTAGTGCGAAACTCCCTAACTTGAGGTGTGTCCAGGTCAATATATATTTCAGTAGCAGAGCTTGAAGATGCTTCTGTTATAGCTGCAGGTGAAAGTGAAGTTTAAATGTTTTGCATTCTTTGTATGGGAGGGCATTTGTTTGGGTCAAAGAATGAACCTGAAAATTTTCCTGCAGTAAGGCCAACAAAGATGGCTACTACAATTCCATCCTTTGATTTATGGAGTGTTGCATCTTCGTTGAATGATTCTCCATATTGTCCCCAGAGTAGGACATCTTGAGTCTGTTCCCTGCAAAAAATGTTGCATATAAACAATTGCTGAGATTACACAAAAGTAATTAATGAGAGCACTGATTTTAACGATCAGGTTTGGAAAAGGTACGTACTCTAGGTTTTGAATTTTAATTCTCCTGAGTTTTTTGTCTGATGTTGGGCTCGCAAAATCATATGGACCAATATGTCTGATTACTCCAATCAAATCTGGAGGAATATTCATTAAAAAAAATTCTGGAGGAATAAGCCAAAAGAATGTGAAGTGCAATAAGTATGATTAAATGTGGAATTAAAGATAGCATTACCTATGAGAGGTTTGGAACTGATATTTTTCCCTAGAACTTCATCAAATGGGCAGAAGTCAAAAAGGAACTTTGGTATGGTTAATCCTCTAGATTCCAGGGGTTGAATTCTTGTGTCATGTTTAAACTGGAGAATGTAGTTCTGGCACTGGTAGATATAGGTCTTTCTTTTTGCATCAATGGCAACAGTATTACTAATTAGGTAGACAGATCCTTTATTTAGCAAGGGGCGGAATTGCTTTGCCAACCTTTTTGGCACAGTGATCTGTGCTATTGAGCCCTAAAAAATTATTGTGCAACAATTGATATGGCTAGTATTAAGTATAGCAAAGAAGTAGAATCTAGTATTAATATTTGGTGGAACACATAAGAGAATGACATACATGTTCATCCAATAGGATGCCGTCAATGCTGATGAGGGGATCTGCAGATTTTGATCTCATGTTTATAGCATCCCATAATCTTATTAGACGTCCAAAAACCTTGCAGTTTTGCTGGCCAACAGATATATCTTTCAATGATGTAGCTGGGTTAGCCATTGAGGTAAAT
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| CDS seq | ATGGCTAACCCAGCTACATCATTGAAAGATATATCTGTTGGCCAGCAAAACTGCAAGGTTTTTGGACGTCTAATAAGATTATGGGATGCTATAAACATGAGATCAAAATCTGCAGATCCCCTCATCAGCATTGACGGCATCCTATTGGATGAACATGGCTCAATAGCACAGATCACTGTGCCAAAAAGGTTGGCAAAGCAATTCCGCCCCTTGCTAAATAAAGGATCTGTCTACCTAATTAGTAATACTGTTGCCATTGATGCAAAAAGAAAGACCTATATCTACCAGTGCCAGAACTACATTCTCCAGTTTAAACATGACACAAGAATTCAACCCCTGGAATCTAGAGGATTAACCATACCAAAGTTCCTTTTTGACTTCTGCCCATTTGATGAAGTTCTAGGGAAAAATATCAGTTCCAAACCTCTCATAGATTTGATTGGAGTAATCAGACATATTGGTCCATATGATTTTGCGAGCCCAACATCAGACAAAAAACTCAGGAGAATTAAAATTCAAAACCTAGAGGAACAGACTCAAGATGTCCTACTCTGGGGACAATATGGAGAATCATTCAACGAAGATGCAACACTCCATAAATCAAAGGATGGAATTGTAGTAGCCATCTTTGTTGGCCTTACTGCAGGAAAATTTTCAGCTATAACAGAAGCATCTTCAAGCTCTGCTACTGAAATATATATTGACCTGGACACACCTCAAGTTAGGGAGTTTCGCACTAGCTACCAATGGGAACGTCCAACTCTTGAGCAACAACTCCCTAAGGTTATACGTTTAACCCCGATCCAAGCAGCAGGAAAAATGTACACCTTAAGTGAGATATCAGCTATGCCTATTTCAGCCTTTCAGATGTATCTAACTAATGTACAATGCTTCAGGTACAAACTCCCTGTCACGATTACAGATGAATCAGGGAGTTTAGATGCAGTAGCATTTTCTTTTGTTGCTGAAGATTTGGTAGAGCTTGATGCAGCCCAAGCTTCCCAAAACATGAAGATAGACCCGGACGATCATCCAACAACACTCAATAATGCCATTGGTAAAACAAAAATTTTTGCTATAGGGATGAATACTGATACATCTTCTAAGTTCCCTATCAGCTATGTGCTTAAGAAGAGTTTCACAATTGAGCCTACTATGTCGGTCCCTATGCTCACAGATGGAGAGAACAAAGAGTTACTACAGCTTCCACCACCTGCACCACATACAGATAACCCAAGCACAACTATTCATAATACAGGAGCATCAAGCAAAAGTACACCTCCTGAAATATCTTTGGCTGATAAAACTCCAACTGAAAAAACCAGCTCAACTACAAAGAGAGCCATTGATTTCACTAAAGACTCCATGGAGGAAACCAGAAGCAAAAAACTACAGCATACAGAGGGAAAGGCTGACTTTCCTGAAGACTCCATTGAAGGAACCAAAGGGTGA
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| Protein seq | MANPATSLKDISVGQQNCKVFGRLIRLWDAINMRSKSADPLISIDGILLDEHGSIAQITVPKRLAKQFRPLLNKGSVYLISNTVAIDAKRKTYIYQCQNYILQFKHDTRIQPLESRGLTIPKFLFDFCPFDEVLGKNISSKPLIDLIGVIRHIGPYDFASPTSDKKLRRIKIQNLEEQTQDVLLWGQYGESFNEDATLHKSKDGIVVAIFVGLTAGKFSAITEASSSSATEIYIDLDTPQVREFRTSYQWERPTLEQQLPKVIRLTPIQAAGKMYTLSEISAMPISAFQMYLTNVQCFRYKLPVTITDESGSLDAVAFSFVAEDLVELDAAQASQNMKIDPDDHPTTLNNAIGKTKIFAIGMNTDTSSKFPISYVLKKSFTIEPTMSVPMLTDGENKELLQLPPPAPHTDNPSTTIHNTGASSKSTPPEISLADKTPTEKTSSTTKRAIDFTKDSMEETRSKKLQHTEGKADFPEDSIEGTKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0012740 | OsAzu_12g0012740.01 | Chr12 | 17353646 | 17356709 | - | NAM | ||
| CDS seq | ATGGCTAACCCAGCTACATCATTGAAAGATATATCTGTTGGCCAGCAAAACTGCAAGGTTTTTGGACGTCTAATAAGATTATGGGATGCTATAAACATGAGATCAAAATCTGCAGATCCCCTCATCAGCATTGACGGCATCCTATTGGATGAACATGGCTCAATAGCACAGATCACTGTGCCAAAAAGGTTGGCAAAGCAATTCCGCCCCTTGCTAAATAAAGGATCTGTCTACCTAATTAGTAATACTGTTGCCATTGATGCAAAAAGAAAGACCTATATCTACCAGTGCCAGAACTACATTCTCCAGTTTAAACATGACACAAGAATTCAACCCCTGGAATCTAGAGGATTAACCATACCAAAGTTCCTTTTTGACTTCTGCCCATTTGATGAAGTTCTAGGGAAAAATATCAGTTCCAAACCTCTCATAGATTTGATTGGAGTAATCAGACATATTGGTCCATATGATTTTGCGAGCCCAACATCAGACAAAAAACTCAGGAGAATTAAAATTCAAAACCTAGAGGAACAGACTCAAGATGTCCTACTCTGGGGACAATATGGAGAATCATTCAACGAAGATGCAACACTCCATAAATCAAAGGATGGAATTGTAGTAGCCATCTTTGTTGGCCTTACTGCAGGAAAATTTTCAGCTATAACAGAAGCATCTTCAAGCTCTGCTACTGAAATATATATTGACCTGGACACACCTCAAGTTAGGGAGTTTCGCACTAGCTACCAATGGGAACGTCCAACTCTTGAGCAACAACTCCCTAAGGTTATACGTTTAACCCCGATCCAAGCAGCAGGAAAAATGTACACCTTAAGTGAGATATCAGCTATGCCTATTTCAGCCTTTCAGATGTATCTAACTAATGTACAATGCTTCAGGTACAAACTCCCTGTCACGATTACAGATGAATCAGGGAGTTTAGATGCAGTAGCATTTTCTTTTGTTGCTGAAGATTTGGTAGAGCTTGATGCAGCCCAAGCTTCCCAAAACATGAAGATAGACCCGGACGATCATCCAACAACACTCAATAATGCCATTGGTAAAACAAAAATTTTTGCTATAGGGATGAATACTGATACATCTTCTAAGTTCCCTATCAGCTATGTGCTTAAGAAGAGTTTCACAATTGAGCCTACTATGTCGGTCCCTATGCTCACAGATGGAGAGAACAAAGAGTTACTACAGCTTCCACCACCTGCACCACATACAGATAACCCAAGCACAACTATTCATAATACAGGAGCATCAAGCAAAAGTACACCTCCTGAAATATCTTTGGCTGATAAAACTCCAACTGAAAAAACCAGCTCAACTACAAAGAGAGCCATTGATTTCACTAAAGACTCCATGGAGGAAACCAGAAGCAAAAAACTACAGCATACAGAGGGAAAGGCTGACTTTCCTGAAGACTCCATTGAAGGAACCAAAGGGTGA
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| Protein seq | MANPATSLKDISVGQQNCKVFGRLIRLWDAINMRSKSADPLISIDGILLDEHGSIAQITVPKRLAKQFRPLLNKGSVYLISNTVAIDAKRKTYIYQCQNYILQFKHDTRIQPLESRGLTIPKFLFDFCPFDEVLGKNISSKPLIDLIGVIRHIGPYDFASPTSDKKLRRIKIQNLEEQTQDVLLWGQYGESFNEDATLHKSKDGIVVAIFVGLTAGKFSAITEASSSSATEIYIDLDTPQVREFRTSYQWERPTLEQQLPKVIRLTPIQAAGKMYTLSEISAMPISAFQMYLTNVQCFRYKLPVTITDESGSLDAVAFSFVAEDLVELDAAQASQNMKIDPDDHPTTLNNAIGKTKIFAIGMNTDTSSKFPISYVLKKSFTIEPTMSVPMLTDGENKELLQLPPPAPHTDNPSTTIHNTGASSKSTPPEISLADKTPTEKTSSTTKRAIDFTKDSMEETRSKKLQHTEGKADFPEDSIEGTKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g27370 | RBH | 3.558578 | 5.142900 | 0.928795 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002450 | RBH | 0.253824 | 11.154471 | 2.787909 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013480 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013390 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0233600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012450 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0255700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002440 | SBH | 0.114200 | 0.113879 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002360 | SBH | 0.465925 | 14.443913 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002470 | SBH | 1.555149 | 34.331482 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012260 | RBH | 0.0 | 0.0 | 0.0 |
