Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0013390 | OGI:08000190 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:18189982-18192384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtacagtctgctatcacaaattaattccaccaggcataattggcgtataaaggtcagagttgctagatcatggcatctatctggaacttccaaagggagagattttactgctttggaacttatcttggtcaatgaagaggtacaaaattaatcatattaattatatcagtttatttacaggacatggatgacattatttttattttccatggtatggatttaatttcttagggggtaggcattatagcttgtgtgggagaaaatgaaatacagaagttttcaacgtctatagtggagggacatgcctacttcttacggaatttccatgttagtagacagacaaaaaagctcaatgctgtgcctagcacatatgccatcttttttacaccatggactattgttgaagagatccctacagagatatctggcagtcttccactctacatttttaattttgtggactttgaggatttggatgaaagggcaaggcatccaaatggtttagtaggtatggatttcgaccctttttagtattatatttttattttcccatctacttttgttatttttatagtcaatgacataggttccttttgttttttttaaaagatgttattggacaactcacggttgtgcaccctctagtacaaagcaacggtttgaatgggccatctgttaggcggaatgtggaattacgagaccttaggtttgttttctcgcaaattatttttgttcatgccttctggtttcgaaaaaatagcgtagtgtttcttaccaataattttacagcgatcggctcttggagatcactttatgggctgagcatgcaacttcttttgaagatgagttcattattgaaactattggtaaagatgcaccagtcataattgtttttgctggccttaatatgaaattattctcaggtgagctttagtttatatcatgccgtacgttgttgattcatgctataaaattagatgataattgtaaacaaacatatgtgtgtttataaatacataggtgctccaagttgccggagcagtgctgccacaaaatggtacattaacattgatattccggagattaatgcctttcgttcaaggtaatgtatgcactttatttggttactatatatggcacaatatttgcccatgatgtaatatccgcatcattatgtgtttattcaacctgcaaggaagaggttgcgaggttcttctcgtacctagtgatggtgctgcactaggagcggctgacgaggcagatgctaataggaagtctatatccgagcttttatccttgaatcctcatgacaacaacgtaagcgtgctttgaagataggtatagtttaaacttttatgtaatatatattattttgaaattggtcctctattttgttttaggatgtacgcttcacttgtgacgcacgtataaaggaaattgatgtctcaagtggttggtggtataaggcctgcagtatttgaagaaagggtgtgaagccaactcttcaaggatttgaatgtgttaactgtgacaacacagagccaataatcacacccaggtattgcttatttttaattacggtgtaacacatgaaagggtaacttgtcctccttaaatttgctgacttttattcactatgcagctataagttaaatgttgtgattgaggatagcactggccgcgcaaaaatattcatgtttggtggtatggcggagcaagttgtgcgacgaacagctgctgatctagttgaagaaagctcagccaatcagctcttactgccgtcacccctccgtgctctcattggccgtaggtatgttttccaaatagttataagtgagcagacctttcggactggacaattgtgctttcaagtaaggaaagtgtttaatccacccccaattgatgggcaaaacaatggtgttcatgccactcttggaaatagtcttagccatgcaaccttggctagaacgtcaggtgctcaaaagaaatgtgatcctacccctttaatggaggcatcggggagtagctccaacaaagcatccaccttgcagacatatggtgtaactgaactcccaacagatcctaaaggaagcgccactccaccacctccttttgctcatggggctatcacagaaacatcaccacagaaggggaatgagatttctgaagaacatgggtacgcaccatattgctacttctcaagctacatgtaattaatatgttgttatagcctcataatagactcatcttatagttaaaaaatatcatcctatgcatttattattcctttggactatcttgtaatgctagatatttatgctgtagaactccggttgggaaacgatctaggtctactcgcaaggaactattctccacgaaaaaagtaaaggcaaggtaa
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| CDS seq | atggagtacagtctgctatcacaaattaattccaccaggcataattggcgtataaaggtcagagttgctagatcatggcatctatctggaacttccaaagggagagattttactgctttggaacttatcttggtcaatgaagagggggtaggcattatagcttgtgtgggagaaaatgaaatacagaagttttcaacgtctatagtggagggacatgcctacttcttacggaatttccatgttagtagacagacaaaaaagctcaatgctgtgcctagcacatatgccatcttttttacaccatggactattgttgaagagatccctacagagatatctggcagtcttccactctacatttttaattttgtggactttgaggatttggatgaaagggcaaggcatccaaatggtttagtagatgttattggacaactcacggttgtgcaccctctagtacaaagcaacggtttgaatgggccatctgttaggcggaatgtggaattacgagaccttagcgatcggctcttggagatcactttatgggctgagcatgcaacttcttttgaagatgagttcattattgaaactattggtaaagatgcaccagtcataattgtttttgctggccttaatatgaaattattctcaggtgctccaagttgccggagcagtgctgccacaaaatggtacattaacattgatattccggagattaatgcctttcgttcaagaggttgcgaggttcttctcgtacctagtgatggtgctgcactaggagcggctgacgaggcagatgctaataggaagtctatatccgagcttttatccttgaatcctcatgacaacaacgatgtacgcttcacttgtgacgcacgtataaaggaaattgatgtctcaagtggttggtggtataaggcctgcagatttgaatgtgttaactgtgacaacacagagccaataatcacacccagctataagttaaatgttgtgattgaggatagcactggccgcgcaaaaatattcatgtttggtggtatggcggagcaagttgtgcgacgaacagctgctgatctagttgaagaaagctcagccaatcagctcttactgccgtcacccctccgtgctctcattggccgtaggtatgttttccaaatagttataagtgagcagacctttcggactggacaattgtgctttcaagtaaggaaagtgtttaatccacccccaattgatgggcaaaacaatggtgttcatgccactcttggaaatagtcttagccatgcaaccttggctagaacgtcaggtgctcaaaagaaatgtgatcctacccctttaatggaggcatcggggagtagctccaacaaagcatccaccttgcagacatatggtgtaactgaactcccaacagatcctaaaggaagcgccactccaccacctccttttgctcatggggctatcacagaaacatcaccacagaaggggaatgagatttctgaagaacatggaactccggttgggaaacgatctaggtctactcgcaaggaactattctccacgaaaaaagtaaaggcaaggtaa
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| Protein seq | MEYSLLSQINSTRHNWRIKVRVARSWHLSGTSKGRDFTALELILVNEEGVGIIACVGENEIQKFSTSIVEGHAYFLRNFHVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFVDFEDLDERARHPNGLVDVIGQLTVVHPLVQSNGLNGPSVRRNVELRDLSDRLLEITLWAEHATSFEDEFIIETIGKDAPVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEINAFRSRGCEVLLVPSDGAALGAADEADANRKSISELLSLNPHDNNDVRFTCDARIKEIDVSSGWWYKACRFECVNCDNTEPIITPSYKLNVVIEDSTGRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRALIGRRYVFQIVISEQTFRTGQLCFQVRKVFNPPPIDGQNNGVHATLGNSLSHATLARTSGAQKKCDPTPLMEASGSSSNKASTLQTYGVTELPTDPKGSATPPPPFAHGAITETSPQKGNEISEEHGTPVGKRSRSTRKELFSTKKVKAR |
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| Function | Replication protein A 70 kDa DNA-binding subunit B [UniProtKB/Swiss-Prot:Q9SD82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0013390 | OsCMeo_12g0013390.01 | Chr12 | 18189982 | 18192384 | + | NAM | ||
| CDS seq | atggagtacagtctgctatcacaaattaattccaccaggcataattggcgtataaaggtcagagttgctagatcatggcatctatctggaacttccaaagggagagattttactgctttggaacttatcttggtcaatgaagagggggtaggcattatagcttgtgtgggagaaaatgaaatacagaagttttcaacgtctatagtggagggacatgcctacttcttacggaatttccatgttagtagacagacaaaaaagctcaatgctgtgcctagcacatatgccatcttttttacaccatggactattgttgaagagatccctacagagatatctggcagtcttccactctacatttttaattttgtggactttgaggatttggatgaaagggcaaggcatccaaatggtttagtagatgttattggacaactcacggttgtgcaccctctagtacaaagcaacggtttgaatgggccatctgttaggcggaatgtggaattacgagaccttagcgatcggctcttggagatcactttatgggctgagcatgcaacttcttttgaagatgagttcattattgaaactattggtaaagatgcaccagtcataattgtttttgctggccttaatatgaaattattctcaggtgctccaagttgccggagcagtgctgccacaaaatggtacattaacattgatattccggagattaatgcctttcgttcaagaggttgcgaggttcttctcgtacctagtgatggtgctgcactaggagcggctgacgaggcagatgctaataggaagtctatatccgagcttttatccttgaatcctcatgacaacaacgatgtacgcttcacttgtgacgcacgtataaaggaaattgatgtctcaagtggttggtggtataaggcctgcagatttgaatgtgttaactgtgacaacacagagccaataatcacacccagctataagttaaatgttgtgattgaggatagcactggccgcgcaaaaatattcatgtttggtggtatggcggagcaagttgtgcgacgaacagctgctgatctagttgaagaaagctcagccaatcagctcttactgccgtcacccctccgtgctctcattggccgtaggtatgttttccaaatagttataagtgagcagacctttcggactggacaattgtgctttcaagtaaggaaagtgtttaatccacccccaattgatgggcaaaacaatggtgttcatgccactcttggaaatagtcttagccatgcaaccttggctagaacgtcaggtgctcaaaagaaatgtgatcctacccctttaatggaggcatcggggagtagctccaacaaagcatccaccttgcagacatatggtgtaactgaactcccaacagatcctaaaggaagcgccactccaccacctccttttgctcatggggctatcacagaaacatcaccacagaaggggaatgagatttctgaagaacatggaactccggttgggaaacgatctaggtctactcgcaaggaactattctccacgaaaaaagtaaaggcaaggtaa
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| Protein seq | MEYSLLSQINSTRHNWRIKVRVARSWHLSGTSKGRDFTALELILVNEEGVGIIACVGENEIQKFSTSIVEGHAYFLRNFHVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFVDFEDLDERARHPNGLVDVIGQLTVVHPLVQSNGLNGPSVRRNVELRDLSDRLLEITLWAEHATSFEDEFIIETIGKDAPVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEINAFRSRGCEVLLVPSDGAALGAADEADANRKSISELLSLNPHDNNDVRFTCDARIKEIDVSSGWWYKACRFECVNCDNTEPIITPSYKLNVVIEDSTGRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRALIGRRYVFQIVISEQTFRTGQLCFQVRKVFNPPPIDGQNNGVHATLGNSLSHATLARTSGAQKKCDPTPLMEASGSSSNKASTLQTYGVTELPTDPKGSATPPPPFAHGAITETSPQKGNEISEEHGTPVGKRSRSTRKELFSTKKVKAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0511750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0511750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013480 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005780 | SBH | 0.0 | 0.0 | 1.508445 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0233600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006290 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0266600 | RBH | 2.2516225 | 0.127896 | 1.8298095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005710 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005710 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0039160 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005900 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012830 | RBH | 0.0 | 0.0 | 0.0 |
