Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_12g0002280 OGI:11005890 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr12:1623256-1627101
Gene Symbol -
DNA seq

GCGTCCGCACAGCCCGCCAGACTCAACTCCCTGGACCGGGTCCCGTGAGCCAACTCCCACTGACACCTGGGGCCCAGGGCGCTGCACCACGGATCTCACCGTGAACCGGGTCCACGCGCGACCTCGCCGACCAGTTCCTTTCCCTTGGCGGAGACGCGGAGGCGCAAGCCGCGGCCTCCATTTTCGGCGCTCTGCTCTCTCCTTTGCGTCGGATTCAAGTAAGGCTTGTTGAGTTCGGTGCCCCATATCCCTCAATCTCGGGTGCGATTCGATCGGGTTTGCTTCGAATTCGTCGTTCGATTGAGGTATGTGATTTCTTGTTTCTTCTTGGTTCTTTCCCCTTTCTGTTCCCTGTTCTTCGTAGCAAGTATGTTGCCGATTGGCCTGCTTGATTTGGTTTCATGGAGAGGTTGCAGTGTGGGTTTGTAGTATCTTGGTTTGCTTTGAGTATTTACAAGGAAAAAAAATGAATTAATACAGAGCAGTTGGCGCTGTTCCATTTTTGCTGCTAGTTACTGGGCATCATCATATATTAGTTCATCAAGCATGGCATTTCATGATTGAATGGTTAAAGAGACCTGCTTGATGGATAATTAATTAGGGTGAGTATCTCATGTGCAATTCAATATCTAAAGAAGAAGTCTGGCCAAGTTCGAGTTCCGGTGTGCAAGCAAGCATTGCACACTGCACATTGACCATGCCGGGAGAATGGACATGGTTTGCGAGTCCCATTGGATTGGATTTCAAACGTTCCTTTCCATGCGGACTAGTGCACCATTTCTGACTATGTTCCTCAACTCCCCCACCCCGGGCGTGTCCTTTATATATTAACATATCAAGATTCATCTCAACATAGTTGTTAAAATTGTAACGCCTCCTGCTTCACAGAATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAGTAAGTTCTAGTGTTCTACTGTTGCAAACTTTACCGTGCTACATTTCTTCCTTTCCTAGTTGTTGCTTTGTCGGTATTTTTACTTTGACGCGGAATGTTTTTCCAGTATTTCCAGAGGTTTAAGCAAATCATGTACATTTCCACCTTTGCAACACTTCTATTTTTCTTCAGGAACTTGTTAGTTTACTTTAGTGACAGTAGAATTTTATTACTGAAGTATGCCCTGAAACTCGTATGATATGACCATGTGAACTTACTTTCAGTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTAGTTTGATCATGTGTAACTGAAATGGCTCATGGGTGATTGGGTGTATTCAATTTCATTTCCTTGTTATAGGTTTCATCAGACCACCTCAAATAGAAGGAATGAACTCACATGTAGCATTATGACTGTGGCAATGCAACATGTCAGTCTTCTCTATTTACCTTTATAACTAAATAAGTGAAAATGGCCGCTGATGAAGTATAGTGATCGTAATGTATTACCACAAGTTACTCCTTTTCTCAATTGATGATTAACTGGTTTTCAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGGTAATTACTTAGATTAGGTGAAGGCGTGTACTAGTATCATACATTAATTTAAATCACAGACATTTGAGAGATTGTCACGATAGCTCTTGATTTGTTTTTTGTCAGTATTTACTCAGATTAGGTGAAGAAACGAACCGCCTTTTCTAAGAATTTAGCATGTCATGCTGCATGAGAAACTCATGCATATCTGGTAGCACTTAATTTCTCATCAGAAGTTGTTACTGATAATTCCATCTAACTTCTTTCACTATCAATTTTTTGTATGACATTAGTTTGTAAAACTTGTACCGCAAAATTTATTACATAACAAAAAATGTTAAAATTGGGACATTAGCTTGTAAAACTTGTATTGCAAAATTCATTGCAGAACAAAAACACGATAAAATTGGTAGCAGTTCAAGTTCAAATAGCTAACCTTTATCACTCAATTTGGAGTTGCAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGTATGTCTGGTTCTGTTCTATTATTGGGAGACTCTACAATATACTAGCACCATAGCACCAATAGACTATCTATACGTATCGTTTTTTGAAGACTTTTGATCTATTGTGATGAATCAACCTTATCTCCACTTATCCAGGGATTTGAGGCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTAACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTAAGTCACATAAGCTTGATGATCTATCGAGCCTGAAAGTTAAAATGAACAGACAGCAATCTGATCTGAGAATTTGCAAAATTTGATTGTCATAGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTATTGATTTTGTTGCCTTTACTGCTTTCAGCATGTCATTTCCTGGTTTATATATTTTTGCGCATTTAAAACTACTTTCAAAAGCGATGATACGTTTTTTTGAAAGCATTGCAGTCCTAATCCATAAAACATGCCGACACATTACTTGCTAATCATGTGATTTCAATTGTTCGAACTTTTCTACATGATAGTATGAGCCACTTCTCATTGGGAATTTCCTGCTCCTTGTTATCTTATTTGTTTCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAGTAAGCAACCACACTTCACATCCTGCCAATGCCAATGAACAAACCATCTTACTGAAAAACAGACACAGAACAACCAGAAATGCTCTGTTGGTCTAACATTTCCTTTTGTATTACCAGCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAAGTCCCTGATGATCATAATAGGGATTCAGAAAAGAAGTCCGAAGATACATCGGTTGGCGTCAGTTTAATGTTTTTACACAAGTCATATGTGATTGTAACCTGTAAACCGTCTCAATTTAGTCCCAATATGGGTGAAAGTAAACAGAAACCATATATGTATAGACACATTTGTGTTTAAGTTCTTGGATTGAATAATCAATGCCCTTCATACAAAAATCGTTCTTTAGGAT

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CDS seq

ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA

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Protein seq

MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT

Function Hydroxymethylglutaryl-CoA lyase, mitochondrial [UniProtKB/Swiss-Prot:O81027]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_12g0002280 OsAzu_12g0002280.02 Chr12 1623426 1627080 + NAM
CDS seq

ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA

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Protein seq

MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT

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Gene Transcript Chromosome Start End Strand Source
OsAzu_12g0002280 OsAzu_12g0002280.03 Chr12 1623575 1627080 + NAM
CDS seq

ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA

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Protein seq

MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT

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Gene Transcript Chromosome Start End Strand Source
OsAzu_12g0002280 OsAzu_12g0002280.01 Chr12 1623426 1627101 + NAM
CDS seq

ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA

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Protein seq

MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT

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Gene Transcript Chromosome Start End Strand Source
OsAzu_12g0002280 OsAzu_12g0002280.04 Chr12 1623256 1627083 + IsoSeq
CDS seq

CGTCCGCACAGCCCGCCAGACTCAACTCCCTGGACCGGGTCCCGTGAGCCAACTCCCACTGACACCTGGGGCCCAGGGCGCTGCACCACGGATCTCACCGTGAACCGGGTCCACGCGCGACCTCGCCGACCAGTTCCTTTCCCTTGGCGGAGACGCGGAGGCGCAAGCCGCGGCCTCCATTTTCGGCGCTCTGCTCTCTCCTTTGCGTCGGATTCAAGTAAGGCT

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Protein seq

RPHSPPDSTPWTGSREPTPTDTWGPGRCTTDLTVNRVHARPRRPVPFPWRRRGGASRGLHFRRSALSFASDSSKA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr12 1625626 1625905 + OsAzu_12g0002280.04 OsAzu_12g0002280.04,OsAzu_12g0002280.01,OsAzu_12g0002280.03 All

Expression

Leaf Root Panicle
FPKM 0.105134 18.682791 4.442235

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0134000 RBH 0.701532 1.272483 4.243569
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g04020 RBH 0.450163 0.812106 1.036543
Nipponbare | IRGSP 1.0 | RAP-db Os12g0134000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0002450 RBH 0.000000 19.189066 8.467495
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0002490 RBH 0.341113 3.553256 1.890482
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0002500 RBH 0.419114 14.287927 6.154527
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0002310 RBH 0.045820 0.360436 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0002560 SBH 6.987005 10.092646 9.068815
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0033300 SBH 8.1722335 12.441556 3.1256595
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0002540 RBH 0.0 0.816412 1.517299
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0030800 RBH 6.9794535 5.426337 1.9582275
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0002330 RBH 0.517394 0.178594 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0002550 RBH 0.273433 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0002570 RBH 3.236275 5.927447 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0002490 SBH 0.938693 0.0 1.962903
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0002490 SBH 0.324951 3.788222 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G002390 RBH 0.000000 0.363199 1.233342
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0002640 RBH 0.687279 2.193708 6.331213
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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