Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0002490 | OGI:11005890 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:1783660-1787373 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttcctttcccttggcggagacgcggaggcgcaagccgcggcctccattttcggcgctctgctctctcctttgcgtcggattcaagtaaggcttgttgagttcggtgccccatatCcctcaatctcgggtgcgattcgatcgggtttgcttcgaattcgtcgttcgattgaggtatgtgatttcttgtttcttcttggttctttcccctttctgttccctgttcttcgtagcaagtatgttgccgattggcctgcttgatttggtttcatggagaggttgcagtgtgggtttgtagtatcttggtttgctttgagtatttacaaggaaaaaaaaatgaattaatacagagcagttggcgctgttccatttttgctgctagttactgggcatcatcatatattagttcatcaagcatggcatttcatgattgaatggttaaagagacctgcttgatggataattaattagggtgagtatctcatgtgcaattcaatatctaaagaagaagtcgggccaagttcgagttccggtgtgcaagcaagcattgcacactgcacattgaccatgccgggagaatggacatggtttgcgagtcccattggattggatttcaaacgttcctttccatgcggactagtgcaccatttctgactatgttcctcaactcccccaccccgggcgtgtcctttatatattaacatatcaagattcatctcaacatagttgttaaaattgtaacgcctcctgcttcacagaatgtcaagcctcgaggagccacttggtcttggggacctgccaaagttgagtattaacagacttgaaaggttctctccaagtgcctgcagagcaagtgttgatgacagcaacaccaacaagtaagttctagtgttctactgttgcaaactttaccgtgctacatttcttcctttcctagttgttgctttgtcggtatttttactttgacgcggaatgtttttccagtatttccagaggtttaagcaaatcatgtacatttccacctttgcaacacttctatttttcttcaggaacttgttagtttactttagtgacagtagaattttattactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagttacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggtagtttgatcatgtgtaactgaaatggctcatgggtgattgggtgtattcaatttcatttccttgttataggtttcatcagaccacctcaaatagaaggaatgaactcacatgtagcattatgactgtggcaatgcaacatgtcagtcttctctatttacctttataactaaataagtgaaaatggccgctgatgaagtatagtgatcgtaatgtattaccacaagttactccttttctcaattgatgattaactggttttcaggttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacaggtaattacttagattaggtgaagacgtgtactagtatcatacattaatttaaatcacagacatttgagagattgtcacgatagctcttgatttgttttttgtcagtatttactcagattaggtgaagaaacgaaccgccttttctaagaatttagcatgtcttgctgcatgagaaactcatgcatatctggtagcacttaatttctcatcagaagttgttactgataattccatctaacttctttcactatcaattttttgtatgacattagtttgtaaaacttgtaccgcaaaatttattacataacaaaaaatgttaaaattgggacattagcttgtaaaacttgtattgcaaaattcattgcagaacaaaaacacgataaaattggtagcagttcaagttcaaatagctaacctttatcactcaatttggagttgcagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagagtatgtctggttctgttctattattgggagactctacaatatactagcaccatagcaccaatagactatctatacatatcgttttttggagacttttgatctattgtgatgaatcaaccttatctccacttatccagggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtaagtcacataagcttgatgatctatcgagcctgaaagttaaaatgaacagacagcaatctgatctgagaatttgcaaaatttgattgtcataggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtattgattttgttgcctttactgctttcagcatgtcatttcctggtttatatatttttgcgcatttaaaactactttcaaaagcgatgatacgtttttttgaaagcattgcagtcctaatccataaaacatgccgacacattacttgctaatcatgtgatttcaattgttcgaacttttctacatgatagtatgagccacttctcattgggaatttcctgctccttgttatcttatttgtttcaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaagtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacagaacaaccagaaatgctctgttggcctaacatttccttttgtattaccagctggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaagtccctgatgatcataatagggattcagaaaagaagtccgaagatacatcggttggcgtcagtttaatgtttttacacaagtcatatgtgattgtaacctgtaaaccgtctcaatttagtcccaatatgggtgaaagtaaacagaaaccatatatgtatacacacatttgtgtttaagttcttggattgaataatcaatgcccttcatacaaaaatcgttctttaggat
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| CDS seq | atgtcaagcctcgaggagccacttggtcttggggacctgccaaagttgagtattaacagacttgaaaggttctctccaagtgcctgcagagcaagtgttgatgacagcaacaccaacaatatttccagaggtttaagcaaatcatgtacatttccacctttgcaacacttctatttttcttcaggaacttttacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggtttcatcagaccacctcaaatagaaggaatgaactcacatgtagcattatgactgtggcaatgcaacatgttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagaggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
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| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNISRGLSKSCTFPPLQHFYFSSGTFTSIAMVATIRRSFTAVLIHGICKANILIHPAMGWIWSSELFHGRFHQTTSNRRNELTCSIMTVAMQHVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT |
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| Function | Hydroxymethylglutaryl-CoA lyase, mitochondrial [UniProtKB/Swiss-Prot:O81027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0002490 | OsLaMu_12g0002490.01 | Chr12 | 1783660 | 1787373 | + | NAM | ||
| CDS seq | atgtcaagcctcgaggagccacttggtcttggggacctgccaaagttgagtattaacagacttgaaaggttctctccaagtgcctgcagagcaagtgttgatgacagcaacaccaacaattacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagaggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
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| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0002490 | OsLaMu_12g0002490.02 | Chr12 | 1783660 | 1787352 | + | NAM | ||
| CDS seq | atgtcaagcctcgaggagccacttggtcttggggacctgccaaagttgagtattaacagacttgaaaggttctctccaagtgcctgcagagcaagtgttgatgacagcaacaccaacaatatttccagaggtttaagcaaatcatgtacatttccacctttgcaacacttctatttttcttcaggaacttttacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggtttcatcagaccacctcaaatagaaggaatgaactcacatgtagcattatgactgtggcaatgcaacatgttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagaggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
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| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNISRGLSKSCTFPPLQHFYFSSGTFTSIAMVATIRRSFTAVLIHGICKANILIHPAMGWIWSSELFHGRFHQTTSNRRNELTCSIMTVAMQHVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr12 | 1784535 | 1784799 | + | OsLaMu_12g0002490.02 | OsLaMu_12g0002490.02,OsLaMu_12g0002490.01 | All |
| SE | Chr12 | 1784931 | 1785197 | + | OsLaMu_12g0002490.02 | OsLaMu_12g0002490.02,OsLaMu_12g0002490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.324951 | 3.788222 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0134000 | RBH | 0.701532 | 1.272483 | 4.243569 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04020 | SBH | 0.450163 | 0.812106 | 1.036543 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0134000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002450 | SBH | 0.000000 | 19.189066 | 8.467495 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002490 | RBH | 0.341113 | 3.553256 | 1.890482 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002500 | RBH | 0.419114 | 14.287927 | 6.154527 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002420 | SBH | 0.000000 | 0.144960 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002560 | RBH | 6.987005 | 10.092646 | 9.068815 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0029200 | RBH | 4.112485 | 6.8839255 | 1.428601 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002460 | SBH | 0.340505 | 0.490512 | 0.770703 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0030800 | RBH | 6.9794535 | 5.426337 | 1.9582275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002340 | SBH | 0.052044 | 0.078039 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002480 | SBH | 0.311087 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002470 | SBH | 5.098277 | 34.494919 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002490 | RBH | 0.938693 | 0.0 | 1.962903 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002480 | RBH | 0.341007 | 3.918729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002390 | RBH | 0.000000 | 0.363199 | 1.233342 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002640 | RBH | 0.687279 | 2.193708 | 6.331213 |
