Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g04020 | OGI:11005890 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1671493-1675232 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGCCTCCATTTTCGGCGCTCTGCTCTCTCCTTTGCGTCGGATTCAAGTAAGGCTTGTTGAGTTCGGTGCCCCATATCCCTCAATCTCGGGTGCGATTCGATCGGGTTTGCTTCGAATTCGTCGTTCGATTGAGGTATGTGATTTCTTGTTTCTTCTTGGTTCTTTCCCCTTTCTGTTCCCTGTTCTTCGTAGCAAGTATGTTGCCGATTGGCCTGCTTGATTTGGTTTCATGGAGAGGTTGCAGTGTGGGTTTGTAGTATCTTGGTTTGCTTTGAGTATTTACAAGGAAAAAAAATGAATTAATACAGAGCAGTTGGCGCTGTTCCATTTTTGCTGCTAGTTACTGGGCATCATCATATATTAGTTCATCAAGCATGGCATTTCATGATTGAATGGTTAAAGAGACCTGCTTGATGGATAATTAATTAGGGTGAGTATCTCATGTGCAATTCAATATCTAAAGAAGAAGTCTGGCCAAGTTCGAGTTCCGGTGTGCAAGCAAGCATTGCACACTGCACATTGACCATGCCGGGAGAATGGACATGGTTTGCGAGTCCCATTGGATTGGATTTCAAACGTTCCTTTCCATGCGGACTAGTGCACCATTTCTGACTATGTTCCTCAACTCCCCCACCCCGGGCGTGTCCTTTATATATTAACATATCAAGATTCATCTCAACATAGTTGTTAAAATTGTAACGCCTCCTGCTTCACAGAATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAGTAAGTTCTAGTGTTCTACTGTTGCAAACTTTACCGTGCTACATTTCTTCCTTTCCTAGTTGTTGCTTTGTCGGTATTTTTACTTTGACGCGGAATGTTTTTCCAGTATTTCCAGAGGTTTAAGCAAATCATGTACATTTCCACCTTTGCAACACTTCTATTTTTCTTCAGGAACTTGTTAGTTTACTTTAGTGACAGTAGAATTTTATTACTGAAGTATGCCCTGAAACTCGTATGATATGACCATGTGAACTTACTTTCAGTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTAGTTTGATCATGTGTAACTGAAATGGCTCATGGGTGATTGGGTGTATTCAATTTCATTTCCTTGTTATAGGTTTCATCAGACCACCTCAAATAGAAGGAATGAACTCACATGTAGCATTATGACTGTGGCAATGCAACATGTCAGTCTTCTCTATTTACCTTTATAACTAAATAAGTGAAAATGGCCGCTGATGAAGTATAGTGATCGTAATGTATTACCACAAGTTACTCCTTTTCTCAATTGATGATTAACTGGTTTTCAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGGTAATTACTTAGATTAGGTGAAGGCGTGTACTAGTATCATACATTAATTTAAATCACAGACATTTGAGAGATTGTCACGATAGCTCTTGATTTGTTTTTTGTCAGTATTTACTCAGATTAGGTGAAGAAACGAACCGCCTTTTCTAAGAATTTAGCATGTCATGCTGCATGAGAAACTCATGCATATCTGGTAGCACTTAATTTCTCATCAGAAGTTGTTACTGATAATTCCATCTAACTTCTTTCACTATCAATTTTTTGTATGACATTAGTTTGTAAAACTTGTACCGCAAAATTTATTACATAACAAAAAATGTTAAAATTGGGACATTAGCTTGTAAAACTTGTATTGCAAAATTCATTGCAGAACAAAAACACGATAAAATTGGTAGCAGTTCAAGTTCAAATAGCTAACCTTTATCACTCAATTTGGAGTTGCAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGTATGTCTGGTTCTGTTCTATTATTGGGAGACTCTACAATATACTAGCACCATAGCACCAATAGACTATCTATACGTATCGTTTTTTGAAGACTTTTGATCTATTGTGATGAATCAACCTTATCTCCACTTATCCAGGGATTTGAGGCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTAACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTAAGTCACATAAGCTTGATGATCTATCGAGCCTGAAAGTTAAAATGAACAGACAGCAATCTGATCTGAGAATTTGCAAAATTTGATTGTCATAGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTATTGATTTTGTTGCCTTTACTGCTTTCAGCATGTCATTTCCTGGTTTATATATTTTTGCGCATTTAAAACTACTTTCAAAAGCGATGATACGTTTTTTTGAAAGCATTGCAGTCCTAATCCATAAAACATGCCGACACATTACTTGCTAATCATGTGATTTCAATTGTTCGAACTTTTCTACATGATAGTATGAGCCACTTCTCATTGGGAATTTCCTGCTCCTTGTTATCTTATTTGTTTCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAGTAAGCAACCACACTTCACATCCTGCCAATGCCAATGAACAAACCATCTTACTGAAAAACAGACACAGAACAACCAGAAATGCTCTGTTGGTCTAACATTTCCTTTTGTATTACCAGCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAAGTCCCTGATGATCATAATAGGGATTCAGAAAAGAAGTCCGAAGATACATCGGTTGGCGTCAGTTTAATGTTTTTACACAAGTCATATGTGATTGTAACCTGTAAACCGTCTCAATTTAGTCCCAATATGGGTGAAAGTAAACAGAAACCATATATGTATAGACACATTTGTGTTTAAGTTCTTGGATTGAATAATCAATGCCCTTCATACAAAAATCGTTCTTTAGGATGAGTATATGTTTCCTAGCATAAGTATCACTCTCGGGTATAATAAGGTCTTGGTTCCTTTTTTGA
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| CDS seq | ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGGATTTGAGGCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTAACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA
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| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT |
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| Function | Hydroxymethylglutaryl-CoA lyase, mitochondrial [UniProtKB/Swiss-Prot:O81027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04020 | LOC_Os12g04020.1 | Chr12 | 1671493 | 1675232 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCAAGCCTCGAGGAGCCACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGGATTTGAGGCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTAACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA
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| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPSACRASVDDSNTNNYKHRNGGNNQTIFHSSAHSWHMQGQYTDSSCNGVDMEFRALPRKVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04020 | LOC_Os12g04020.2 | Chr12 | 1671493 | 1675232 | + | MSU_osa1r7 | ||
| CDS seq | ATGACAGCAACACCAACAATTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGGTTTCATCAGACCACCTCAAATAGAAGGAATGAACTCACATGTAGCATTATGACTGTGGCAATGCAACATGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGGACGGTCTGCAAAATGAGAAGAATACTGTACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGAGGATTTGAGGCTGCTGTTGCAGCTGGTGCAAAAGAAGTTGCAGTTTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAATTGTACCATCAAGGAAAGCCTTGTTCGGTACCATGATGTTGTAACTTCTGCCAAGAAACATGGAATACGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGGTAGCGTACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAA
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| Protein seq | MTATPTITSIAMVATIRRSFTAVLIHGICKANILIHPAMGWIWSSELFHGRFHQTTSNRRNELTCSIMTVAMQHVLWDLPRFVKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.450163 | 0.812106 | 1.036543 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0134000 | RBH | 0.701532 | 1.272483 | 4.243569 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04210 | RBH | 0.946719 | 0.812714 | 0.671900 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0134000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002280 | RBH | 0.105134 | 18.682791 | 4.442235 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002490 | RBH | 0.341113 | 3.553256 | 1.890482 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002500 | RBH | 0.419114 | 14.287927 | 6.154527 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002310 | RBH | 0.045820 | 0.360436 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002560 | RBH | 6.987005 | 10.092646 | 9.068815 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0033300 | SBH | 8.1722335 | 12.441556 | 3.1256595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002540 | RBH | 0.0 | 0.816412 | 1.517299 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0030800 | RBH | 6.9794535 | 5.426337 | 1.9582275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002330 | RBH | 0.517394 | 0.178594 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002550 | RBH | 0.273433 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002570 | RBH | 3.236275 | 5.927447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002390 | SBH | 0.345489 | 0.0 | 1.535953 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002480 | SBH | 0.341007 | 3.918729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002390 | RBH | 0.000000 | 0.363199 | 1.233342 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002640 | RBH | 0.687279 | 2.193708 | 6.331213 |
