Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_02g0004140 | OGI:02009420 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr02:3035504-3038452 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGCGCTCTCTTCACGCGCGCCAGTGCGCCTCCTTCGACATGGTCAATTGTGCTGCCTTCTCTTTCAGCTCCATGCTAGTCCCTAGCATTTGTGCTGGTATTTTATCAACGCATTTCACAACCAACTTAGCAAAATATCTTGGTTAGCAGAATTTCACAACCAACATGGTTAGTTGTGCTGACCTAGTTAATTTTTTCAATAACACATTGATGATCGGAAACAAACTGCTTATAGCAGAATATCTTGGTATCTTTCTAACCTTTTTGACGTTGTTTCTACCTTTTTGTCATGCCTGTACAACTTGAGCATAAATAGTGTTTCAACAAACAAGTGAAGGATCAAAGCAAGACGAATTCTTTCAGCACTCAATGCCCTGAGATGATAGTAGTCTGTCACAAGCCGCGGAGAACGAACTATAAGACAAGTCAGTCAGAAGTACTAATTCTAGTGAAATTACATAAACTCCTGTTGGGTGAAAGTACAAAATTATCTATCATTGATGTTATGTGTTTCAGTCAGCGTCTATACTGTCCAGACTAGCAACTACTTCCATGATAGTTGGCCTCATCAAAGGATTATAGTTGACACACTTGCAGGCAGTTTCAAGCACCTTTAGCATTTGCTCATCATACCCCATGCCTCGAACTGTTGGATCCAGGACCTTGATCTGTTTTCCCACTGATCTCATCTCCTGTACCCACGGGACAAGTTCCTTTGATGTAGACAGTAAAGGAACAGGCCGTCTTCCCGTGAGAAGCTCAAGCAGGACCACTCCGAAACTGTATATGTCGCCTCTCAATGTAGCAATCCATGATTGCCCATACTCAGGGGGGATGTAACCCAGGGTGCCAACTAGCTCAGTTGTGACATGAGTTTTGCTAGGAAGGATCAACCTTGATAGTCCAAAATCTGCAATATAAGCTTTGAATTCTTTGTCGAGCAGGATGTTGCTGGATTTGATGTCACGATGGACAATATGAGGCTTGCATACATCATGGATGTAAGAAATACCTAGGCTTGCTCCTTGAGCAATCTTGAGCCTGGTTGGCCAATCAAGAAATGAGCTAGCATCATCATCCCTGTTGTGAAGCCAATCGTCTAAGCTGCCATTCTCCATGTAAGAATATATAAGCAGCCTCGAGTTTCCATGTATACAGTAACCCCAGAGTGGCACAAGATTGTCATGCTGCGCCATGGTGAGTGCTTCAATCTCTGCAGTGAATTCCCTTTCCATCAGGCACATTTCACTATTGAGCTTCTTGATAGCTAACTTGGAGCCATCAGGTAGCTCAGCCTTGTAGACTAATCCATAACCTCCACAACCTATGATGTTCTCCTTATCGAAGTTATTTGTAGTCTTCATGATGTCTGCAAACGTAAGCTTGTTATTGTCTCCCTTGCCTTGTGGCATCACCATCAATGAATGGTCTGAATTTGGATTGAATGAGGCTGTTTCTTCATTTCTGTTGTTAGCTAATTCCCCTTTTCTCATCAACTTTGTAGCCCTGAGTGACACGAGGAGACTACTCAGGGATAAAAGAATGATAATGCCTCCAACAGACACGCTGAGTGTGATTGCTAAAATAACTTTCTTTTTGTGTTGTTTTCTGGACACTGAAGGTGCTTTTGATGAATCACAGCTGCGGAAGATATTTGAGCCACACAGCTTTGAATTTCCAACAAAGCTAGAATTTTGAAATGTACTAAACTGACCTCCAGTTGGAATAGACCCTTCCAGATCATTGTTAGAAACATTGAGCTTAGAAAGGAAATGCAGATTGTTCAGTGCAGATGGGATTGTACCTATGAGATGGTTATTGGATAAGTCGAGCACCTGCAGATCCGTAAGGTTGCAAAGCGGTTGTGGGATCTCTCCTGAAATACTATTGAAGCTGATATTGAGTGTCCGGAGCATTTTTAGTTGGCCAATCTCTTGTGGGATTGCACCCATGAGATGGTTCCTGGCTAGATTTAGTGTTGCTGGGAAAGCACGAAATCCACGGTATTCAAGTGATGGTCCTGTATAAATAGGAAGCTGCAGGATCCCTGGGTCAAAATATGGTGTAGAATTTGCTGATATGAGCCTTGGTATCTCCATCAAAGCTGTTGGGATCCCCCCTGTCAAGCTATTGTTTGATATATCAAGATAGAAGAGGAAGTTTAGTCTGTTAATCCAGGCAGGTATTTGTCCAGTGAGTTGATTGTTAGATAAATCTAACATCTGCAAATTAGTGAGTTTTGATAACCAAAATGGTATGTTCCCAATCAATGAACAGTCATCAATTGATACAAATTGCAGATTCTCAAAGCCATCAATTGTTTCATCCTCTGGCATAAGCTCACCATTGAAGTTCACTCCCATAAGCAAAGTGCTGAGGCTCCTGGAGTTCTTGAGTATCTGAAGTGTATCAGTGATATTCGTAAGAGAATTGTTGGAAATTGAAAGGAAGGAGAGGGACTTCAGATTGCCTATTCCCTTTGGCAGCTGGCCATGGAATTTATTGGAAGACATCCGCAATGCAATTAGATTGCTGCATGAATAGATGTTTTGCGGAATTGTTCCATTGAAGTTGTTAAGCAGAAGATCTAAAGTTTGTAAATTGGGTAGGGTGGAGAAATTGATCTTGGAGAGCTCTCCACTGAAGCTGTTGCTCTTGATATCTATGGTTTTGAGATTTGTGCAGTTGCTCAGAGTCGATGGCACCTCTCCATACATGTTGTTGTGGCCCAAAAGGAGTTCCTCTAATTTCTTGAGTTCACCTATAGATTCTGGAATCCTGCCATTGAAATTGTTCCCTCCAAGATCAAGTGTAACCAGATTACTTAGTTTCATGATATGCGCACTATCGAGTGTTCCATTTAAACCATTGTTGGGAACAGACAGGTGCTCCAAGGAGGTGGCATTGAAGAGTTCATCAGGGAGAGTCCCACTGAGATTGTTTTGA
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| CDS seq | ATGCCGCGCTCTCTTCACGCGCGCCAGTGCGCCTCCTTCGACATGGCAGTTTCAAGCACCTTTAGCATTTGCTCATCATACCCCATGCCTCGAACTGTTGGATCCAGGACCTTGATCTGTTTTCCCACTGATCTCATCTCCTGTACCCACGGGACAAGTTCCTTTGATGTAGACAGTAAAGGAACAGGCCGTCTTCCCGTGAGAAGCTCAAGCAGGACCACTCCGAAACTATTGTTCAGTGCAGATGGGATTGTACCTATGAGATGGTTATTGGATAAGTCGAGCACCTGCAGATCCGTAAGGTTGCAAAGCGGTTGTGGGATCTCTCCTGAAATACTATTGAAGCTGATATTGAGTGTCCGGAGCATTTTTAGTTGGCCAATCTCTTGTGGGATTGCACCCATGAGATGGTTCCTGGCTAGATTTAGTGTTGCTGGGAAAGCACGAAATCCACGGGTGGAGAAATTGATCTTGGAGAGCTCTCCACTGAAGCTGTTGCTCTTGATATCTATGTTGCTCAGAGTCGATGGCACCTCTCCATACATGTTGTTGTGGCCCAAAAGGAGTTCCTCTAATTTCTTGAGTTCACCTATAGATTCTGGAATCCTGCCATTGAAATTGTTCCCTCCAAGATCAAGTGTAACCAGATTACTTAGTTTCATGATATGCGCACTATCGAGTGTTCCATTTAAACCATTGTTGGGAACAGACAGGTGCTCCAAGGAGGTGGCATTGAAGAGTTCATCAGGGAGAGTCCCACTGAGATTGTTTTGA
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| Protein seq | MPRSLHARQCASFDMAVSSTFSICSSYPMPRTVGSRTLICFPTDLISCTHGTSSFDVDSKGTGRLPVRSSSRTTPKLLFSADGIVPMRWLLDKSSTCRSVRLQSGCGISPEILLKLILSVRSIFSWPISCGIAPMRWFLARFSVAGKARNPRVEKLILESSPLKLLLLISMLLRVDGTSPYMLLWPKRSSSNFLSSPIDSGILPLKLFPPRSSVTRLLSFMICALSSVPFKPLLGTDRCSKEVALKSSSGRVPLRLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0004140 | OsAzu_02g0004140.01 | Chr02 | 3035504 | 3038452 | + | NAM | ||
| CDS seq | ATGCCGCGCTCTCTTCACGCGCGCCAGTGCGCCTCCTTCGACATGGCAGTTTCAAGCACCTTTAGCATTTGCTCATCATACCCCATGCCTCGAACTGTTGGATCCAGGACCTTGATCTGTTTTCCCACTGATCTCATCTCCTGTACCCACGGGACAAGTTCCTTTGATGTAGACAGTAAAGGAACAGGCCGTCTTCCCGTGAGAAGCTCAAGCAGGACCACTCCGAAACTATTGTTCAGTGCAGATGGGATTGTACCTATGAGATGGTTATTGGATAAGTCGAGCACCTGCAGATCCGTAAGGTTGCAAAGCGGTTGTGGGATCTCTCCTGAAATACTATTGAAGCTGATATTGAGTGTCCGGAGCATTTTTAGTTGGCCAATCTCTTGTGGGATTGCACCCATGAGATGGTTCCTGGCTAGATTTAGTGTTGCTGGGAAAGCACGAAATCCACGGGTGGAGAAATTGATCTTGGAGAGCTCTCCACTGAAGCTGTTGCTCTTGATATCTATGTTGCTCAGAGTCGATGGCACCTCTCCATACATGTTGTTGTGGCCCAAAAGGAGTTCCTCTAATTTCTTGAGTTCACCTATAGATTCTGGAATCCTGCCATTGAAATTGTTCCCTCCAAGATCAAGTGTAACCAGATTACTTAGTTTCATGATATGCGCACTATCGAGTGTTCCATTTAAACCATTGTTGGGAACAGACAGGTGCTCCAAGGAGGTGGCATTGAAGAGTTCATCAGGGAGAGTCCCACTGAGATTGTTTTGA
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| Protein seq | MPRSLHARQCASFDMAVSSTFSICSSYPMPRTVGSRTLICFPTDLISCTHGTSSFDVDSKGTGRLPVRSSSRTTPKLLFSADGIVPMRWLLDKSSTCRSVRLQSGCGISPEILLKLILSVRSIFSWPISCGIAPMRWFLARFSVAGKARNPRVEKLILESSPLKLLLLISMLLRVDGTSPYMLLWPKRSSSNFLSSPIDSGILPLKLFPPRSSVTRLLSFMICALSSVPFKPLLGTDRCSKEVALKSSSGRVPLRLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0153450 | RBH | 0.067110 | 0.0 | 0.346779 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0153450 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027320 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004280 | RBH | 0.035066 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004190 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004040 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004130 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0055400 | SBH | 0.7668005 | 0.463171 | 2.2909955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004440 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004240 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004580 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004510 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004100 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004350 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004030 | RBH | 0.000000 | 0.000000 | 0.000000 |
