Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNaBo_02g0004030 | OGI:02009420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:2855537-2858485 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atgCcgcgctctcttcacgcgcgccagtgcgcctccttcgacatggtcagttgcgctgccttctctttcagctccatgctagtccctagcatttgtgctggtattttatcaacgcatttcacaaccaacttagcAaaatatcttggttagcagaatttcacaaccaacatggTtagtagtgctgacctagttaattttttcaataacacattgatgatcggaaacaaactgcttatagcagaatatcttggtatctttctaacctttttgacgttgtttctaccTttttgtcatgcctgtacaacttgagcataaatagtgtttcaacaaACcagtgAaggatcaaagcaagacgaattctttcagcactcaatgccctgaaatgatagtagtctgtcacaagccgcggagaacgaactataagacaagtcagtcagaagtactaattctagtgaaattacataaactCctgttgggtgaaagtacaaaattatctatcattgatgttaTGtgtttcggtcagcgtctatactgtccagactagcaactacttccatgatagttggcctcatcaaaggattatagttgacacacttgcaggcagtttcaagcacctttagcatttgctcatcataccccatgcctcgaactgttggatccaggacctcgatctgttttcccactgatctcatctcctgtacccacGggacaagttcctttgatgtagacagtaaaggaacaggccgtcttcccgtgagaagctcaagcaggaccactccgaaactgtatatgtcgcctctcaatgtagcaatccatgattgcccatactcaGgggggatgtaacccagggtgccaactagctcagttgtgacatgagTtttgctaggaaggatcaaccttgatagtccAaaatctgcaatataagctttgaattctttgtcgagcaggatgttgctggatttgatgtcacgatggacaatatgaggcttgcatacatcatggatgtaagaaatacctaggcttgctccttgagcaatcttgagcctggttggccaatcaagaaatgagctagcatcatcatccctgttgtgaagccaatcgtctaagctgccattctccatgtaagaatatataagcagcctcgagtttccatgtatacagtaaccccagagtggcacaagattgtcatgctgcgccatggtgagtgcttcaatctctgcagtgaattccctttccatcaggcAcatttcactattgagcttcttgatagctaacttggagccatcaggtagctcagccttgtagactaatccataacctccacaacctatgatgttctccttatcgaagttatttgtagtcttcatgatgtctgcaaacgtaagcttgttattgtctCccttgccttgtggcatcaccatcaatgaatggtctgaatttggattgaatgaggctgtttcttcatttctgttgttagctaattccccttttctcatcaactttgtagccctgagtgACacgaggagactactcagggataaaaGaatgataatgcctccAacagacacgctgagtgtgattgctaaaataactttctttttgtgttgttttctGgacactgaaggtgctcttgatgaatcacagctgcggaagatatttgagccacacagctttgagtttccaacAaagctagaattttgaaatgtactAaactgacctccagttggaatagacccttccagatcattgttagaaacattgagcttagaaaggaaatgcagattgttcagtgcagatgggattgtacctatgagatggttattGgataagtcgagcacctgcagatccgtaaggttgcaaagcggttgtgggatctctcctgaaatactattgaagctgatattgagtgtccggagcatttttagttggccaatctcttgtGggattgcacccatgagatggttcctggctagaTttaatgttgctGggaaagcacgaaatccacggtattcaagtgatggtcctgtatAaataggaagctgcaggatccctgggtcAaaatatggtgtagaatttgctgatatgagccttggtatctccatcaaagctgttgggatcccccctgtcAagctattgtttgatatatcaagatagaAGaggaagtttagtctgttaatccaggcaggtatttgtccagtgagttgattgttagataaatctaacatctgcaaattagtgagttttgataaccAaaatggtatgttcccAatcAatgaaCAGTcatcaattgatacaaattgcagaTtctcaaagccatcaattgtttcatcctctggcataagctcaccattgaagttcactcccataagcaaagtgctgaggctcctggagttcttgagtatctgaagtgtatcagtgatattcgtAagagaattgttggAaattgaaaggaaggagagggacttcagattgcctattccctttggcagctggccatggaattTAttggaagacatccgcaatgcaattagattgctgcatgaatagatgTtttgcggaattgttccattgaagttgttaagcagaagatctaaagtttGtaaattGggtagggtGgagaaattgatcttggagagctctccactgaagctgttgctcttgatatctatggttttgagatttgtgcagttgctcagagtcgatggcacctctccatacatgttGttgtggcccaaaaggagttcctctaatttcttgagttcacctatagattctggaatcctgccattgaaaTtgttCcctccaagatcaagtgtaaccagattacttagtttcatgatatgcgcactatcgagtgttccatttAaaccattgttGggaacagacaggtgctccaaggaggtggcattgAagagttcatcaGggagagtcccactgagattgttttga
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CDS seq | atgCcgcgctctcttcacgcgcgccagtgcgcctccttcgacatggcagtttcaagcacctttagcatttgctcatcataccccatgcctcgaactgttggatccaggacctcgatctgttttcccactgatctcatctcctgtacccacGggacaagttcctttgatgtagacagtaaaggaacaggccgtcttcccgtgagaagctcaagcaggaccactccgaaactgtatatgtcgcctctcaatgtagcaatccatgattgcccatactcaGgggggatacccttccagatcattgttagaaacattgagcttagaaaggaaatgcagattgttcagtgcagatgggattgtacctatgagatgttgctcagagtcgatggcacctctccatacatgttGttgtggcccaaaaggagttcctctaatttcttgagttcacctatagattctggaatcctgccattgaaaTtgttCcctccaagatcaagtgtaaccagattacttagtttcatgatatgcgcactatcgagtgttccatttAaaccattgttGggaacagacaggtgctccaaggaggtggcattgAagagttcatcaGggagagtcccactgagattgttttga
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Protein seq | MPRSLHARQCASFDMAVSSTFSICSSYPMPRTVGSRTSICFPTDLISCTHGTSSFDVDSKGTGRLPVRSSSRTTPKLYMSPLNVAIHDCPYSGGIPFQIIVRNIELRKEMQIVQCRWDCTYEMLLRVDGTSPYMLLWPKRSSSNFLSSPIDSGILPLKLFPPRSSVTRLLSFMICALSSVPFKPLLGTDRCSKEVALKSSSGRVPLRLF |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNaBo_02g0004030 | OsNaBo_02g0004030.01 | Chr02 | 2855537 | 2858485 | + | NAM | ||
CDS seq | atgCcgcgctctcttcacgcgcgccagtgcgcctccttcgacatggcagtttcaagcacctttagcatttgctcatcataccccatgcctcgaactgttggatccaggacctcgatctgttttcccactgatctcatctcctgtacccacGggacaagttcctttgatgtagacagtaaaggaacaggccgtcttcccgtgagaagctcaagcaggaccactccgaaactgtatatgtcgcctctcaatgtagcaatccatgattgcccatactcaGgggggatacccttccagatcattgttagaaacattgagcttagaaaggaaatgcagattgttcagtgcagatgggattgtacctatgagatgttgctcagagtcgatggcacctctccatacatgttGttgtggcccaaaaggagttcctctaatttcttgagttcacctatagattctggaatcctgccattgaaaTtgttCcctccaagatcaagtgtaaccagattacttagtttcatgatatgcgcactatcgagtgttccatttAaaccattgttGggaacagacaggtgctccaaggaggtggcattgAagagttcatcaGggagagtcccactgagattgttttga
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Protein seq | MPRSLHARQCASFDMAVSSTFSICSSYPMPRTVGSRTSICFPTDLISCTHGTSSFDVDSKGTGRLPVRSSSRTTPKLYMSPLNVAIHDCPYSGGIPFQIIVRNIELRKEMQIVQCRWDCTYEMLLRVDGTSPYMLLWPKRSSSNFLSSPIDSGILPLKLFPPRSSVTRLLSFMICALSSVPFKPLLGTDRCSKEVALKSSSGRVPLRLF
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0153600 | RBH | 0.000000 | 0.000000 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0153600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004140 | RBH | 0.000000 | 0.000000 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004280 | RBH | 0.035066 | 0.000000 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004190 | RBH | 0.000000 | 0.000000 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004040 | RBH | 0.000000 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004130 | RBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004090 | RBH | 0.000000 | 0.000000 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004280 | SBH | 0.0 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003970 | SBH | 0.000000 | 0.000000 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004230 | SBH | 0.000000 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004200 | SBH | 0.000000 | 0.000000 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004100 | RBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004050 | SBH | 0.000000 | 0.000000 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027070 | SBH | 0.000000 | 0.000000 | 0.000000 |