Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_01g0038810 OGI:01044490 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr01:36105827-36107131
Gene Symbol -
DNA seq

ACATTGTGCCTCACAACAGCGGCTGCCGAACAATATTGCTCGAGGCTGCCATGCACACCATGGACAGACTGTAACATTGCTTTCACCGCACGCACCACCAATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGGTGCACAAATATTTGTCTACAATCCTGTGCTCCATGATATATACCTATATGTACAAATCTATAGCCAATCACACTAATGACATATTTCAACACCATCTTTCAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGTAAGCCTTTCATCTGTTCACATATAACTCAGTTCTTTTCCTTCTAAAATCACCACATTAGTATCCGCATTCTGGCCACAGAGATTTTATCACACAAGCCTACCAGTACAGAGAACAAATCCGAGTCACTATTAGCATATCAACAATCATGATATAATTAATTGTCTACTAACAGAATTTATAGCCATATTTACCTATTTCATGACTTCTTTCCAATTAAACATAGCAATCTTATAAACAATGTGTGCTCACAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTAAGTATACTTACACTAGACAAACATTGGTCTATTCATGCATTCCCTAAAAAAATAACATGCAGTTCCAATTGCAGTACTTTACCAAGGAATATTCAGTGACCTACATTCAGCCACTCATGGGACGCAAAAAAACTATCTTCGTTCAGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA

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CDS seq

ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA

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Protein seq

MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL

Function Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_01g0038810 OsAzu_01g0038810.01 Chr01 36105827 36107131 + NAM
CDS seq

ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA

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Protein seq

MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0541000 SBH 4.642141 2.897840 3.125316
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g35930 SBH 1.183195 0.998598 0.932590
Nipponbare | IRGSP 1.0 | RAP-db Os11g0242900 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0030740 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0020140 SBH 1.600250 9.037033 17.338793
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0019530 SBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0018900 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0582500 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0008670 SBH 0.000000 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G030760 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0008590 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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