Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsAzu_01g0038810 | OGI:01044490 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:36105827-36107131 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ACATTGTGCCTCACAACAGCGGCTGCCGAACAATATTGCTCGAGGCTGCCATGCACACCATGGACAGACTGTAACATTGCTTTCACCGCACGCACCACCAATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGGTGCACAAATATTTGTCTACAATCCTGTGCTCCATGATATATACCTATATGTACAAATCTATAGCCAATCACACTAATGACATATTTCAACACCATCTTTCAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGTAAGCCTTTCATCTGTTCACATATAACTCAGTTCTTTTCCTTCTAAAATCACCACATTAGTATCCGCATTCTGGCCACAGAGATTTTATCACACAAGCCTACCAGTACAGAGAACAAATCCGAGTCACTATTAGCATATCAACAATCATGATATAATTAATTGTCTACTAACAGAATTTATAGCCATATTTACCTATTTCATGACTTCTTTCCAATTAAACATAGCAATCTTATAAACAATGTGTGCTCACAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTAAGTATACTTACACTAGACAAACATTGGTCTATTCATGCATTCCCTAAAAAAATAACATGCAGTTCCAATTGCAGTACTTTACCAAGGAATATTCAGTGACCTACATTCAGCCACTCATGGGACGCAAAAAAACTATCTTCGTTCAGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
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CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
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Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL |
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Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_01g0038810 | OsAzu_01g0038810.01 | Chr01 | 36105827 | 36107131 | + | NAM | ||
CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTTCACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACATAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGGCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
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Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTHSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDVL
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | SBH | 4.642141 | 2.897840 | 3.125316 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g35930 | SBH | 1.183195 | 0.998598 | 0.932590 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242900 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030740 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020140 | SBH | 1.600250 | 9.037033 | 17.338793 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0019530 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0018900 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0582500 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008670 | SBH | 0.000000 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030760 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008590 | SBH | 0.0 | 0.0 | 0.0 |