Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_01g0006600 OGI:01016130 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr01:4874850-4879798
Gene Symbol OsWD40-7
DNA seq

CCCTCACCTCACGCTGACGATCGCCACCGCCTCCCCCGCAAAACCGTCGCGCCGACTCACTCTCGCCGCCGCCGCCGCCGCCGCCGCGAGATCCGATCGCCATGACGATCTCCTAGTCCCTCGCCTCCCGCCTCGGCCCCGGCGGCCCCACGAGGTGGAGCCCCTACGCCCGGGCCCCCGATCCCGGCCACGGGGCGGGGAGGAGCTCCGTTCCTCCCGGTGGTGGTGGTAACTCCCGCCCTCCCCTCCGCGTCGCCCCCGCCACGGCGAGGCTCCTCGGCCACCCCGCGCGGAAGGGGGCCGCGGCGCCGCCCGGATCGAGGTGCCGCGCGGAGGCGGAGGCGGAGGCCACAGCCGCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGTGATTATTGTCTCCCCCCACTCAACTATTTTCTGCGATGAATTTGCGTCGATTCTATAACCTAATCATATGATGAGTGAGGATTTTGCTATATTCTATATAACCTAATCATCTGACGAGTGAGGAATTTGGTCGATTCTATAACCTAATCATCTGATGAGTGAGGAATTTGCTCGATTCTATAACCTAATCATCTGATGAGTGAGGAATTTGCTCGATTCTATAACCTAATCATCTGATTGAGAGGAATTTGCGTCGATTCTATAACCTAATCTTCTGATGAGTAATTGTCCAACGCTGCAGGCTATCAGTGGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGGCTCTCCGCTCTCGGCACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGATTCCTCCGTTGATTGTGGCGGTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTATCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATTGGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGCTTGTGTACTGTTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTTGTCAAAAAAAAAGTAGTGAAAAAAAGAAAGAGAAAGTAAAAAAAAAAGAAAAAAAAAGATGTGAGATGATTGATGATTATATTTTCTTGGAAAGAGAAGACTGAACAAGGAGGAAAAGATAGGTGTCTGGCTGATAAAAAAATTCTAATATTTATTACATTGCATTGTTTTCTTAATGTTTCTGTCATAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGTAATATTTTAATTTCGTTGATTTTTTTTTGTGGGAGTAGTCCATTTTGTGTTACATATTGCGATGTTACTATTGTGCATTGAACTGTTGATATTGATCCCTACAATGAATTGTAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGTAATGCTGCAAAACTTGTGCAAACTTGTGCTTCTGTGTTGGCTACTAAGGAGTATTATGTTAGTACTAGTATTTGACCATAAAACTCTATTCATCAGGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGTAAGTTCTACTCTGGCCTGCATCCTCTGTAGCAATGGTTGCACAAGTTTTATAGCATTGAAATTTCAGGCACAAATTTATTTAGCTACTTAACCAGTTAAAATAGTCAATAAGATGACATTTTTGTGTATCTAAACTGCATATTAGGTTGACATGTTTTTTGACCGGAGGGAGTACTATTGTGCGTATTTTCTTGTGTTGAACATTACTATTCTCCAACACTCAAATAGTTTCTGGCTGCTAAATCACTTAGGGCATTTTTATTTCAGATGATGTAGTAACTAAATTAAACTTAGTTTAAGAGTTAAGTCACATTACTTTCTGTTTTTAAACTGCATTTCAATGCTAATGCAGTTATACTATGTTGAATGGGAGCACTACGTAGCTTTTGCACAATTAAAAAAAAGACACTATGTTGAAACCTTTTTTTTTTGGGGTGGTCGTGCCTAGCACCAAATATGGTATATAAACTGCACTGTTTACTATCTACTTTACTTTTCTATCTTTTATTTATATAAAGTTTTTCTTGGCGTGTTCTATGCATTGAGCAGCTCCTTCCTGTTGTCGAATGGCAGCAAAATCCCTTCATAAGCACAATTAGTTCTCTTAATTGACTTGGAAGATCTTTGCTCAAGAGTAGTTTTGTTGCCGCAATTGGTCTTGTGTTATTTATGTCTATTAATGAGTCCATCTTCATTCAGTCAAGCAAGGGTACCTTCAATATGTAGGATTTCAGTGTTCTAGACTTATTCTGTACTGTATGTAGGGGTGGAAACGAGCCGAGCCGGCTCGGCTTGCAGTGGCTCGCAAAAAACTAGGCTTGGCTTGGCTCGGCTTGGTTAGGGAAACAAGCTAAAACTTAAGCTCGGCTCGGCTCGTTTCCTGGCTCGAGCCAGCTCGAGCTGGCTTGCAAGCCTTCCTGTTGAAACACCTCTTCATATATATTTTGTAATTATTAAAAAAAGTAAAAACAAATCATCAACATGTAAAATTTAAATAAGTTTTTATATTCAATTCTTCAAAATCTTGATGATAAATTTCAAGTTGACAAATAATAACACTATATAAAGTAAAATAATCAATATAAACACACGATGGCCTAGGCTCGCGAGCTAAAACAAGCGGCTCGCGAGCTAGCTCGGCTCAGCTCATTTCAGCAACGAGCTAAAAAGGAGGCTTGGGCTTGGCTTGTTTGGCTTACGAGCTGAGCCAAGCCAACCAAGCTCGAGCCAAGCCCGAGCTGAGCTCACGAGCCCGAGCTTTTTTTCCACCCCTAACTGTATGGGTGGTTCAGTGTTCTTGGTTAGCTGGTAGTGAAGAGTGAACTTATAATGATCAGCATATTTCATTGTGGCATCAAGACCAAGGAGAGACCCTCTACCCGTTTTCTATTTAATCCTTGTAATTAATCTCCATATTAATCGGCTTGGAGAAACGAAACGACGTTACTGCCGCTGCATGATTGCACAGGCAAGGAATGTTCCATGCTGCATGCAGCTCGAAAATCGCATGGCCTACTCGATCTCCGTGATAACTAGTTAATCCATCCAACATGCACATGCTACCAGCGTTAATATGCTGATCAAATCGGAATATCTCCACTTTCGTTATGCGCTGATCATTATGGAATGGAGGGAGTAATAATTTGGTTGGCTGGTAGTGAAGAGTGAACTTAAAGTAATAAGGACTAAACATCCGCTTGGGAAACTTTAGAAGGCTGCTCAGTTCATCTGGTTCCCTTGAAAGAGTATCAATAAGGGAGTATGATGTAATTGAGGAAGCTATTGATGGAAGTGTCTCAGGCTCTCAGCAACAATTGAATGATTTGTACAATCTGCATCAAAGCATGAACAAATGGGGTCGTGAATTGTCAATTCTTAGTTCTGGATATTCTTCTTGCTTTTCTGCCCAGTATTGCTACCAACCCTCTATATCCAAGTATTCTTTAATCCTTTTCAAGATACTGCTCTAGAATCTGTTGATCGCTTTGGGTGTTTTTGTTGTGGTGCTTGTTGTGGAGAAACATTCTGTATTTATTGTGGTGCATGGTTATGGAAACCATGTAAGTTCAATGCTAGTGTCCAGTTTGCAAGTTCAGTTTTCTTTGGATGAGAATGCTCTGCTTCTGAACCTTACTCCTTTCAACAGTCTTCAGTTGTTCCCCTGTTGCTAAACATGCACTTCTGTTGCAGGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTAAGTGCATAAAAAATCTGTAGGCCATCGAAGAACGTACTGCTCCCTTACTGGAAGTCTCAAAAATGGTTTGGTCTTGGTCTTTCAGGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAGAAGCACTGTAGCGTCGTTGAGTAAAGATAGCAGCTCCTGCGAATTGTCGTGAGCTCCATCTCAGAATCCATGTAGTAATAACTTATGACAATGCTGATGTAAATATATTTGCCCAATCCTGAGGCCTGATTAGCAATATTATGTTCCATTCTCCC

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CDS seq

ATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MRLVWLISKGLSGITLQFSLADGPYMCVDAIKMGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLREPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILSGHERQVISLGVSVTRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

Function Zinc finger CCCH domain-containing protein 17 [UniProtKB/Swiss-Prot:Q0DYP5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_01g0006600 OsAzu_01g0006600.03 Chr01 4876086 4879798 + NAM
CDS seq

ATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MRLVWLISKGLSGITLQFSLADGPYMCVDAIKMGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLREPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILSGHERQVISLGVSVTRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

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Gene Transcript Chromosome Start End Strand Source
OsAzu_01g0006600 OsAzu_01g0006600.02 Chr01 4874850 4879798 + NAM
CDS seq

ATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLREPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILSGHERQVISLGVSVTRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

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Gene Transcript Chromosome Start End Strand Source
OsAzu_01g0006600 OsAzu_01g0006600.01 Chr01 4874850 4879798 + NAM
CDS seq

ATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCGTGAACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLREPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILSGHERQVISLGVSVTRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

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OsAzu_01g0006600.03OsAzu_01g0006600.02OsAzu_01g0006600.01AS4875000 bp4876000 bp4877000 bp4878000 bp4879000 bp4880000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 4875680 4876448 + OsAzu_01g0006600.02 OsAzu_01g0006600.01,OsAzu_01g0006600.02 All

Expression

Leaf Root Panicle
FPKM 0.263695 3.695562 5.912740

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0946100 SBH 0.0 0.0 0.871102
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g09252 RBH 1.046536 0.843435 0.544385
Nipponbare | IRGSP 1.0 | RAP-db Os01g0575500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0006240 RBH 0.295995 1.143075 3.619409
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0006550 RBH 0.195700 1.708816 3.103149
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0006070 RBH 0.099323 0.053953 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0006260 RBH 4.750277 6.413085 15.447327
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0079900 RBH 2.7927765 5.477164 7.9023565
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0006210 RBH 0.566588 0.104805 1.352865
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0080200 RBH 3.5346815 11.047866 11.270938
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0006010 RBH 0.159580 0.118016 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0006220 RBH 0.121806 2.793710 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0006270 RBH 0.000000 5.819687 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0006220 RBH 0.192152 0.110933 0.213595
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0006180 RBH 0.301167 0.640094 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G006220 RBH 0.284849 0.403314 4.376122
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0006120 RBH 1.236629 7.628105 4.085769
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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