Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0946100 | OGI:01122260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:41582224-41583931 | ||||||||
| Gene Symbol | OsWD40-31 | ||||||||||
| DNA seq | GGGGGGGAAGATAAAAACAGCACGCGCTAGCTCGGTCGAGTCGTCGTCGTCGCCTCAAACCACCCGCCTCGGCCTCTCTGTCCCGGACGAACACCTCGCAGCCTCTGCTATTCTCGCCACCACCTCCGCGTCCGCTCGCCTCAAGAAAGCATCCCCGCACGCGGCCATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCGTCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGAATCGTGTCAGGTCAGGTCAAAATGTGTTCTTGATTTGTGTTGTGTTTGTAGATCGTAGTTTGGATTGTTTGGTAGCACACTGCCTTGGTTGGGTTGATGATCTACTCTGATGGATATATTGGAGGATATGAATTAAGGAGTCATGAAGGTATTAGTTTTAGATTTGGGTGTAAATGGCTGTATACTTTTATACCTAATTCATACACATTTTGATTAAATGGAAATATCAGTAATAATGGTTATCAT
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| CDS seq | ATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCGTCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGA
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| Protein seq | MAMPLRDPTDRAAMSAPLLPRSAFVSSASFSSFSSVASFSSTSSSFSDPAVPSDVVEALPMSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAGGRVFSAHQDGRVRVWRVSRRSENAFKLVAALPTTRDYLGKIFRHASYVQTRRNHRRLWIEHADSISCLAVHDGVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADSGTIYSASADGHVKAWGKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSGDGDGAAAAALARVGVIRGHEGPVKCIQASWCRVSNGCMVYSGGLDKSIRVWWVPNGWKANEQKQQQENDTKDHKNCVFLR |
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| Function | Protein JINGUBANG [UniProtKB/Swiss-Prot:O48716] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0946100 | OsNip_01t0946100-02 | Chr01 | 41582224 | 41583931 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCGTCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGA
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| Protein seq | MAMPLRDPTDRAAMSAPLLPRSAFVSSASFSSFSSVASFSSTSSSFSDPAVPSDVVEALPMSRDSFKALAVLRDHQGSVSSLSLCGEFLLSASTGADIVAWQQPDLRRFARFGHGEGSVKALAAAGGRVFSAHQDGRVRVWRVSRRSENAFKLVAALPTTRDYLGKIFRHASYVQTRRNHRRLWIEHADSISCLAVHDGVVYSGSWDKTLKVWRISDLKCLESIHAHDDAINAVAADSGTIYSASADGHVKAWGKGKAAHFLQGILISRDGVSWNALVASADAGARRVYAAGSDGHVVGWDRVGGRGSRWSLSCDVKAHDMAVLCLCVAGDLVFTGSADKTIGLWRWQTSGDGDGAAAAALARVGVIRGHEGPVKCIQASWCRVSNGCMVYSGGLDKSIRVWWVPNGWKANEQKQQQENDTKDHKNCVFLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.871102 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71780 | RBH | 0.0 | 0.0 | 0.222544 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046840 | RBH | 0.0 | 4.574317 | 0.734582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046370 | RBH | 0.073444 | 0.394054 | 1.106005 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046800 | RBH | 0.0 | 1.295443 | 0.768161 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046270 | RBH | 0.0 | 0.052262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045780 | RBH | 0.0 | 1.485655 | 0.769222 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0682000 | RBH | 0.562006 | 0.4984595 | 0.31538 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045310 | RBH | 0.0 | 0.0 | 0.143894 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0684300 | RBH | 0.782822 | 0.0738595 | 2.8743995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046040 | RBH | 0.0 | 7.524074 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046030 | RBH | 0.0 | 0.0 | 0.313210 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046070 | RBH | 0.0 | 0.000000 | 0.696207 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045880 | RBH | 0.0 | 0.0 | 0.446713 |
