Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_01g0006070 OGI:01016130 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr01:4507463-4517324
Gene Symbol OsWD40-7
DNA seq

CCCTCACCTCACGCTGACGATCGCCACCGCCTCCCCCGCAAAACCGTCGCGCCGACTCACTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCGAGATCCGATCGCCATGACGATCTCCTCGTCCCTCGCCTCCCGCCTCGGCCCCGGCGGCCCCACGAGGTGGAGCCCCTACGCCCGGGCCCCCGATCCCGGCCACGGGGCGGGGAGGAGCTCCGTTCCTCCCGGTGGTGGTGGTAACTCACGCCCTCCCCTCCGCGTCGCCCCCGCCACGGCGAGGCTCCTCGGCCACCCCGCGCGGAAGGGGGCCGCGGCGCCGCCCGGATCGAGGTGCCGCGCGGAGGCGGAGGCGGAGGCCACAGCCGCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGTGATTATTGTCTCCCCCCACTCAACTATTTTCTGCGATGAATTTGCGTCGATTCTATAACCTAATCATATGATGAGTGAGGATTTTGCTATATTCTATATAACCTAATCATCTGACGAGTGAGGAATTTGGTCGATTCTATAACCTAATCATCTGATGAGTGAGGAATTTGCTCGATTCTATAACCTAATCATCTGATTGAGAGGAATTTGCGTCGATTCTATAACCTAATCTTCTGATGAGTAATTGTCCAACGCTGCAGGCTATCAGTGGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGGCTCTCCGCTCTCGGCACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGAGTAAATTCAAGTTGGGGGTTGCATCTGCGTCGATTCCTCCGTTGATTGTGGCGGTCTTTGAAGTGCTTCCATGAGATCAATTGGGGAGTACTATCTGATTGCTTCCTGTGGTCAGACATATTGGTACCAAATCAGTTTTTTCTTTGCAAGATTGGGGTTATCGGCATGCCGGACCGAATTGTTACGGGAATCTTTTCGCCTGCTTGTGTACTGTTGATCAGTATATCAGGGTCAGTTTGCGAGCAAGGCAATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGGTTTTGTCAAAAAAAAGAAGTAGTGAAAAAAAGAAAGAGAAAGTAAAAAAAAAAAAGAAAAAAAAAGATGTGAGATGATTGATGATTATATTTTCTTGGAAAGAGAAGACTGAACAAGGAGGAAAAGATAGGTGTCTGGCTGATAAAAAAATTCTAATATTTATTACATTGCATTGTTTTCTTAATGTTTCTGTCATAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGTAATATTTTAATTTCGTTGATTTTTTTTTGTGGGAGTAGTCCATTTTGTGTTACATATTGCGATGTTACTATTGTGCATTGAACTGTTGATATTGATCCCTACAATGAATTGTAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCATGGACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCGGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGCAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGTAATGCTGCAAAACTTGTGCAAACTTGTGCTTCTGTGTTGGCTACTAAGGAGTATTATGTTAGTACTAGTATTTGACCATAAAACTCTATTCATCAGGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGTAAGTTCTACTCTGGCCTGCATCCTCTGTAGCAATGGTTGCACAAGTTTTATAGCATTGAAATTTCAGGCACAAATTTATTTAGCTACTTAACCAGTTAAAATAGTCAATAAGATGACATTTTTGTGTATCTAAACTGCATATTAGGTTGACATGTTTTTTGACTGGAGGGAGTACTATTGTGCGTATTTTCTTGTGTTGAACGTTACTATTCTCCAACACTCAAATAGTTTCTGGCTGCTAAATCACTTAGGGCATTTTTATTTCAGATGATGTAGTAACTAAATTAAACTTAGTTTAAGAGTTAAGTCACATTACTTTCTGTTTTTAAACTGCATTTCAATGCTAATGCAGTTATACTATGTTGAATGGGAGCACTACGTAGCTTTTGCACAATTAAAAAAAAGACACTATGTTGAAACCTTTTTTTTTTGGGGTGGTCGTGCCTAGCACCAAATATGGTATATAAACTGCACTGTTTACTATCTACTTTACTTTTCTATCTTTTATTTATATAAAGTTTTTCTTGGCATGTTCTATGCATTGAGCAGCTCCTTCCTGTTGTCGAATGGCAGCAAAATCCCTTCATAAGCACAATTAGTTCTCTTAATTGACTTGGAAGATCTTTGCTCAAGAGTAGTTTTGTTGCCGCAATTGGTCTTGTGTTATTTATGTCTATTAATGAGTCCATCTTCATTCAGTCAAGCAAGGGTACCTTCAATATGTAGGATTTCAGTGTTCTAGACTTATTCTGTACTGTATGTAGGGGTGGAAACGAGCCGAGCCAAGCCTGGCTCGGCTCGGCTTGCAGTGGCTCGCAAAAAACTTGGCTTGGCTCGGCTTGGTTAGGGAAACAAGCTAAAACTTAAGCTCGGCTCGGCTCGTTTCCTGACTCGAGCCAGCTCGAGCTGGCTTGCAAGCCTTCTTGTTGAAACACCTCTTCATATATATTTTGTAATTATTAAAAAAAGTAAAAACAAATCATCAACATGTAAAATTTAAATAAGTTTTTATATTCAATTCTTCAAAATCTTGATGATAAATTTCAAGTTGACAAATAATAACACTATATAAAGTAAAATAATCAATATAAACACACGATGGCCTAGGCTCGCGAGCTAAAACAAGCGGCTCGCGAGCTAGCTCGGCTCAGCTCATTTCAGCAACGAGCTAAAAAGGAGGCTTGGGCTTGGCTTGTTTGGCTTACGAGCTGAGCCAAGCCAACCAAGCTCGGGCCAAGCCCGAGCTGAGCTCACGAGCCCGAGCTTTTTTTCCACCCCTAACTGTATGGGTGGTTCAGTGTTCTTGGTTAGCTGGTAGTGAAGAGTGAACTTATAATGATCAGCATATTTCATTGTGGCATCAAGACCAAGGAGAGACCCTCTACCCGTTTTCTATTTAATCCTTGTAATTAATCTCCATATTAATCGGCTTGGAGAAACGAAACGACGTTACTGCTGCTGCATGATTGCACAGGCAAGGAATGTTCCATGTGTTGGTAGGATCACTTCTGAACTACACTCAATAGTCTAGCTGAAACTGAAACTGAAAATGAGCTGAAAAGCTTACTAACTCAAGAGGGGTACATGTCCTTTTATAGGGCTTTAAGTCGGTGCTACAGTATGCTACAGTAACCGACATACTATTCATCTTGCTGTTTACAGCTAAAGTAAAGACTAATTTTACTACTACTACCAGCTGTTAAGCAGCTGTACATTCTTACTAGCTAAGGAACCTACAGTACCAAGGATTATGCTAACAATTCTCCCCCTAATCCTTGCACATCAGATTTTGATTGATTTGGACCATTCCAATCTTAGCTCGCAATTCTTGGAATTTCACCCGTCCTAATGCCTTCGTTAGAATGTCAGCGAGCTGGTCCATGGTGGTGATGAAGCTGGCGTTGATGCTTCCTTCCTCCAAGCAGTCTCTGATAAAGTGATAGCGCAAATCAATATGCTTGCTGCGCTCATGGAAGACAGGGTTCTTTGCCAGCGCCAAGGCAGACTTGCTGTCCACCTTTAGCTCGATCGCTTTAGGTTGCTTCCCAAGGAGTTCACCAAGCAATCGAGCCAACCAAATTCCTTGTGTGGCAGCATTGGTGGCTGCAACATATTCTGCTTCACAGGAAGATAAAGCCACCACTCTCTGCTTGATGGATTGCCAACTCACCAAGCTTGAATCAAGGAAAAACAACATGCCACTTGTGCTTCTCCTTGTATCAATGTCGCCGGCGAGGTCGCTGTCGCTGTAACCAATCAGCCGCTGCTCCTCTTTCTCTCTTTTGTAATGAAGTCCGTACTCCATAGTGCCAGCGACATAGCGTAGAATGCGCTTCACGGCCACCATGTGCTCCTCAGTTGGCCGCTCCATGAAGCGACTCACGAACCCAACAGCAAATGCTAGGTCTGGCCGTGTGTGCACAAGATAGCGAAGGCTACCAACCAGCCGTCGGTATTTTGTTGCATCAACGGGAGGTGCCGTGCTATCACGGCTCAGCTTGAGCCTTTCTTCCATTGGAGTGGCGCAAGGGTTGCAGTCCTTGAGGCCAGCCGACTCCACAATGCGCTGAGCATAGCGCCCCTAGTTCAGGGAGATTCCATCATCTCCTTGCTTCACCTCAATTCCAAGGTAGAAAGAGAGCAAGCCAAGATCACTCATCTGAAATTTTGCCTTCATTTCTTCCTTGAATTGTTCAATTGCTCTTGTCGATGGCCCGGTGATCACAAGGTCATCTACATAGACCCCGACGAGTAGAGCAGAGCCACCATTGTTTCGTCGGTACATGGCGTGCTCATGCTTGCTTTGGTCGAAACCGAGCTCCTTCAGAGTACAATCAAGCTTCGCATTCCAGGCTCTTGGCGCCTGCCGCAGGCCATAAAGAGCCTTGCGCAGGCGGAGGACCTTGTCTTCTTCTCCGGCGACGACAAAACCAGGGGGCTGCTTCACATACACCTCCTCTGCCAAATCTCCATTGAGAAAGGCAGACTTCACGTCCATGTGATGGACGTGCCACCCTTTTTGGGTGGCGACCGCAAGCAGGAGACGAATTGACTCCATGCGCGCGACGGGCGCAAACACCTCGTCAAAATCAATCCCAGGTTGCTGGACAAATCCCATGGCGACGAGACGAGCTTTGTGCTTGACCACCTTTCCGGCCTCGTTCTTCTTCAATTTATAGACCCATTTGAGTCCAATTGGGCGATGGCCATGTGGGAGATCAACAAGCTCCCAAATCCCATTGCGATTCACCGCGTCCATCTCTTCACGCATGGCTGCTCGCCATGCATCATCACCCTCCGCCTCTGCAAACGAGCATGGCTCACCAGGTCCAGCGAGGAGCAAAGACGCCTCCTCGAGTTCCCGTTGTGCAATCCCTGGTGCCGGGGCATTCTCCCCGATCAAGTTGTCGACTGTGCGGTAGCGGACAGGGGTGTTGGAGTGCGCCGCGTCGATCCTCTCCTCGTCTTGTGAGGGAGGTGACACGAACTCTGTTGGGGCAACGCTAGGACTTGGTGCTGGTGTGGCAGGGGTTGCTGGTGAAGTCTCTTGTAGTGGCGTTGGGGATGCTGATGGGGTCACCACGCCTCCCCCCACACTAGGGATAGGATGCCCAGTGGTCTTCTCAACATGGTACTCGATGGCGAAATCGCTGCTCGATCGAGCATCTGTGCCGCTTGCTGCCGTCCAGTCCCACCCGTGGCTCTCGTCAAAGATGACATCACGGGCGAGACGTACACGCCGTGTCCTTGGATCCAGGACACGATATGCCTTCACCCCTTCTTCATAGCCAATGAAGACGACGGGTGTGCTGCGGTCGTCGAGCTTGCGCACATCGTTTAGCTCCTTCACGTACGCCAGGCACCCGAAGGTACGTAGGAAGCTGACCATCGGCTTCTTGCCGTGCCAAGCTTCATACGGCGTCTTGCCAGTGAGGCTTTTGGTTGGTGCACGATTGAGGAGGAAGACAGCCGTGCTGACAGCCTCCCCCCAAAACTCCGCAGGCATTCCCCTCTGTTTGAGAAGGGCGCGCGCCATGGACACCACTGTCTGATTCCGCCGCTCGACCACGCCATTTTGTTGTGGGGCGTAGGGCGCGGAGAAATGACGTTGGATACCCTCATCAGTGCAGTAGGTGGCGAACTCGAGCGACGTGAACACGCCGCCGTTGTCCGTGCGAAATACACACAACTTGCGCCCACAGTGAGTCTCGGCTGCCATCTGAATTTTCTTGATGGCGTCAGGTGCATTGCTCTTGGCTGCTAGGAGCGCCACCCACATGTATCGTGTGGCATCGTCGACCAGCAGCAAGAAGTAACGCCGGCCACTTGGCGTTGCCGGCGTGATAGGGCCACAGATGTCGCCATGGACGAGATCTAGCGGCTCCTGAGCGCGGTACTTGGCTGCCTTTGGAAAGGCAGCGCGCCGATGCTTGGTGATGACACACGTGTCGCAAAGCTGCTCGACATGCTCCAGTCGAGGCAGGCCACGCACGAGCTCTTGTCGGCCCATCTTCTCTAGCGAACCGAAGTGGATGTGCCCGAAGCGCTCGTGCCAGCGCCAGGCAACATCATCGTGTCGCGTAGCCAAGCAAATTGGCCTAGCAACCTCGAGGCGGAGGACGTATAGACGGCTTCGTCCCCGCTTGATCTTGGCAAGAAGACGGCGGCGGCGGTCCCAGATACGCATGATGCCGTCCTCGACCAGCACACGCGTCCCGCTTTCATCAAGCTGACCGATGCTGATGATTGAGCTCGAGGCGCGGAATGTAGTAGACGCCACTGAGAACCTTGTGCTCGCCATTCTTGCCGGTGAAGATGACGTTACCGGCACCCTTGATGTCTACGATGGAGCTGTCTCCAAATTTGACGGTGCCGGTGACGCTTCGATCGAGCTCAACAAAGATGTCACCACGGCCCGTCATGTGGTTGGTGGCTCCTGTGTCAAGGTACCACGCCTCCTCCTTGTCCTCAGCGTCCGTGGCTCCCAGGCTCACCTGCACTCGCTGTTCAACGAGGGAGACAGGAGATGGCGCGATGATGGGACCATCATTGAGCTCGCAAGCGTGGGCCATCAACAAAGTGGCATCGTCATCTTCAAGCTCGCATGCCCGCGAAAGCAGCAGGACGTCGTCATCGTCATCACCTTGGGCTAGGTGAGCGGCTTCTTTCTTGGGCTGGCGACAGTCCTTGGCCCAATGGCCAAGACGGCCACAATTGTGGCATCTGTTTGGTGCCGTGTCCCGATTGGTGTTCCCTTTCTCGCCTCCTACGCCGCCACCAAAACCTCTTTTCTTGCGATGGGAGCGAGGTCGCTGACGAGCTCCACCTTGCGACTGCTTGGAGGATCGCTCCCCTTTTTGTCGCTCCTTCTGCCGTGCGAGCCACTGCTCCTCCGTGAGGAGAAGCTGGCCTCCGGCTGGAGTAGTCGTCAACGTTGGAGCTGGTCGCCGTTCCTCCGCCACCTTGAGACGCCCAGTGACGTCCTCGATGGTGAGTGTCGAGAGATCCAACAGGGTCTCAATCGACACAGCGATTTGGGAAAATCGCTCTGGGACGACGCGCAAGAACTTCTCGATGACGTTCTGCTCCTCGATTCGTTCTCCTAATGTCCCAAGCTGAGACACTAGGCTTGTGAGCCGTAGGGCGAAGTCGTCGATCGATTCACCATCATGGAACGAGATGGATTCATACTCCCGGCGCAGCTGTTGCGCCTTCGCCTTCCTCACGCGGTCCACGCCGACGCGCATCACTTTGATGGCATCCCAGGCGTCCTTCGCGGAGTCCTTGGTGGCGAGCAGCGAGATCATCTCGCTGGGGACAGCGCGTAGGATGGCCTCCATTGCCATCCTGTCTTCTTGCTCATCGCATTCACCATGCTCCACCGCGTCCCAAAGGCCACGGGCTTGCAGCATCACCTTCATCAGCAGCGACCACTCGGTGTAGTTGGTTCGCGTGAGGGTGGGGAAAGCAGCAGCGCCGCCAACCTCCCTGACAGTCCGCTGCACAACAACCTCTCGAACAGCAGCGCCTCGACCTCGTCCTCGCCGTGGTGTTGGCGATAACGAGTGACGGCGGCCTCGGTGTTGTGGCGACCTGGAAGCATTGGCTCCAGCAGCTGGTACTCCCTCCATCTCTCTCTCACACTTCTTTAACCTAAGCTCTGGTACCAATTGTTGGTAGGATCACTTCTGAACTACACTCAATAGTCTAGCTGAAACTGAAACTGAAAATGAGCTGAAAAGCTTACTAACTCAAGAGGGGTACATGTCCTTTTATAGGGCTTTAAGTCGGTGCTACAGTATGGTACAGTAACCGACATACTATTCATCTTGCTGTTTACAGCTAAAGTAAAGACTAATTTTACTACTACTACCAGCTGTTAAGCAGCTGTACATTCTTACTAGCTAAGGAACCTACAGTACCAAGGATTATGCTAACACCATGCTGCATGCAGCTCGAAAATCGCATGGCCTACTCGATCTCCGTGATAACTAGTTAATCCATCCAACATGCACATGCTACCAGCGTTAATATGCTGATCAAATCGGAATATCTCCACTTTCGTTATGCGCTGATCATTATGGAATGGAGGGAGTAATAATTTGGTTGGCTGGTAGTGAAGAGTGAACTTAAAGTAATAAGGACTAAACATCCGCTTGGGAAACTTTAGAAGGCTGCTCAGTTCATCTGGTTCCCTTGAAAGAGTATCAATAAGGGAGTATGATGTAATTGAGGAAGCTATTGATGGAAGTGTCTCAGGCTCTCAGCAACAATTGAATGATTTGTACAATCTGCATCAAAGCATGAACAAATGGGGTCGTGAATTGTCAATTCTTAGTTCTGGATATTCTTCTTGCTTTTCTGCCCAGTATTGCTACCAACCCTCTATATCCAAGTATTCTTTAATCCTTTTCAAGATACTGCTCTAGAATCTGTTGATCGCTTTGGGTGTTTTTGTTGTGGAGAAACATTCTGTATTTATTGTGGTGCATGGTTATGGAAACCATGTAAGTTCAATGCTAGTGTCCAGTTTGCAAGTTCAGTTTTCTTTGGATGAGAATGCTCTGCTTCTGAACCTTACTCCTTTCAACAGTCTTCAGTTGTTCCCCTGTTGCTAAACATGCACTTCTGTTGCAGGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTAAGTGCATAAAAAATCTGTAGGCCATCGAAGAACGTACTGCTCCCTTACTGGAAGTCTCAAAAATGGTTTGGTCTTGGTCTTTCAGGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAGAAGCACTGTAGCGTCGTTGAGTAAAGATAGCAGCTCCTGCGAATTGTCGTGAGCTCCATCTCAGAATCCATGTAGTAATAACTTATGACAATGCTGATGTAAATATATTTGCCCAATCCTGAGGCCTGATTAGCAATATTATGTTCCATTCTCCC

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CDS seq

ATGACGATCTCCTCGTCCCTCGCCTCCCGCCTCGGCCCCGGCGGCCCCACGAGGTGGAGCCCCTACGCCCGGGCCCCCGATCCCGGCCACGGGGCGGGGAGGAGCTCCGTTCCTCCCGGTGGTGGTGGTAACTCACGCCCTCCCCTCCGCGTCGCCCCCGCCACGGCGAGGCTCCTCGGCCACCCCGCGCGGAAGGGGGCCGCGGCGCCGCCCGGATCGAGGTGCCGCGCGGAGGCGGAGGCGGAGGCCACAGCCGCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGCTATCAGTGGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCATGGACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCGGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGCAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MTISSSLASRLGPGGPTRWSPYARAPDPGHGAGRSSVPPGGGGNSRPPLRVAPATARLLGHPARKGAAAPPGSRCRAEAEAEATAASDAACPNPPRRGCEETNPNPNPKRNPKPAERGEEPPVRAVGCGGFAFLCALAGHTEAISGISLPVGSDKLYSGSADGSVRVWDCNSGKCVDAIKMGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLHGPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILGGHERQVISLGVSATRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

Function Zinc finger CCCH domain-containing protein 17 [UniProtKB/Swiss-Prot:Q0DYP5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_01g0006070 OsARC_01g0006070.01 Chr01 4507463 4517324 + NAM
CDS seq

ATGACGATCTCCTCGTCCCTCGCCTCCCGCCTCGGCCCCGGCGGCCCCACGAGGTGGAGCCCCTACGCCCGGGCCCCCGATCCCGGCCACGGGGCGGGGAGGAGCTCCGTTCCTCCCGGTGGTGGTGGTAACTCACGCCCTCCCCTCCGCGTCGCCCCCGCCACGGCGAGGCTCCTCGGCCACCCCGCGCGGAAGGGGGCCGCGGCGCCGCCCGGATCGAGGTGCCGCGCGGAGGCGGAGGCGGAGGCCACAGCCGCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGCTATCAGTGGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGGTAGCTGGGCTCTCCGCTCTCGGCACTCCCTTCAGGCTCTTTACGCACGATTCAAGTTGA

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Protein seq

MTISSSLASRLGPGGPTRWSPYARAPDPGHGAGRSSVPPGGGGNSRPPLRVAPATARLLGHPARKGAAAPPGSRCRAEAEAEATAASDAACPNPPRRGCEETNPNPNPKRNPKPAERGEEPPVRAVGCGGFAFLCALAGHTEAISGISLPVGSDKLYSGSADGSVRVWDCNSGKVAGLSALGTPFRLFTHDSS

Gene Transcript Chromosome Start End Strand Source
OsARC_01g0006070 OsARC_01g0006070.03 Chr01 4508661 4517324 + NAM
CDS seq

ATGAGGCTGGTTTGGCTGATAAGCAAGGGGCTCTCTGGAATTACATTACAGTTCTCTCTGGCTGATGGTCCATACATGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCATGGACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCGGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGCAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MRLVWLISKGLSGITLQFSLADGPYMCVDAIKMGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLHGPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILGGHERQVISLGVSATRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

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Gene Transcript Chromosome Start End Strand Source
OsARC_01g0006070 OsARC_01g0006070.02 Chr01 4507463 4517324 + NAM
CDS seq

ATGACGATCTCCTCGTCCCTCGCCTCCCGCCTCGGCCCCGGCGGCCCCACGAGGTGGAGCCCCTACGCCCGGGCCCCCGATCCCGGCCACGGGGCGGGGAGGAGCTCCGTTCCTCCCGGTGGTGGTGGTAACTCACGCCCTCCCCTCCGCGTCGCCCCCGCCACGGCGAGGCTCCTCGGCCACCCCGCGCGGAAGGGGGCCGCGGCGCCGCCCGGATCGAGGTGCCGCGCGGAGGCGGAGGCGGAGGCCACAGCCGCCTCCGATGCTGCCTGCCCTAACCCGCCGCGGCGTGGGTGCGAAGAGACGAACCCGAACCCGAACCCTAAGAGAAACCCTAAGCCGGCGGAGAGAGGGGAGGAGCCGCCCGTCCGCGCCGTCGGCTGCGGCGGATTCGCCTTCCTCTGCGCCCTCGCTGGCCACACCGAGGCTATCAGTGGGATCTCTCTGCCTGTGGGTTCCGACAAGCTTTACTCCGGCAGCGCTGACGGCTCCGTCCGCGTCTGGGACTGCAACTCTGGCAAGTGCGTTGATGCCATCAAGATGGGAGGCAAGATTGGTTGCATGATTACCCATGGCCCATGGATATTTGTTGGAATCACGAAGTCCGTGGAGGCATGGAACACACAAACAGGGATGAAGTCCAGTCTCCATGGACCTTCTGGTCTGGTTTGTTCCATGACTATCAAGGATGAGATGTTGTTTGCTGGTACCGGAGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCGGTGGCCATGAGCGCCAAGTGATTTCGCTCGGTGTCTCAGCAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTTAAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATTATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTGAGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGCAACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGAGCTCGCAGCCGGCGGCCTCCTCTTCACCGGCGACGGCGCCGGCGAGCTGAAGGTGTGGAGGTGGGCGCCCGAGGAGGAGCCTGCAACCCCGGCGCTCGTGAAATCATCAATGTAG

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Protein seq

MTISSSLASRLGPGGPTRWSPYARAPDPGHGAGRSSVPPGGGGNSRPPLRVAPATARLLGHPARKGAAAPPGSRCRAEAEAEATAASDAACPNPPRRGCEETNPNPNPKRNPKPAERGEEPPVRAVGCGGFAFLCALAGHTEAISGISLPVGSDKLYSGSADGSVRVWDCNSGKCVDAIKMGGKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLHGPSGLVCSMTIKDEMLFAGTGDGRIMAWKIPDKKGDSGPVAILGGHERQVISLGVSATRLYSGSLDKTIKVWDLKTLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGVRTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGDGAGELKVWRWAPEEEPATPALVKSSM

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OsARC_01g0006070.03OsARC_01g0006070.02OsARC_01g0006070.01AS4508000 bp4510000 bp4512000 bp4514000 bp4516000 bp4518000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 4508255 4509027 + OsARC_01g0006070.01 OsARC_01g0006070.01,OsARC_01g0006070.02 All

Expression

Leaf Root Panicle
FPKM 0.099323 0.053953 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0187500 RBH 1.593069 1.290906 2.164315
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g09252 RBH 1.046536 0.843435 0.544385
Nipponbare | IRGSP 1.0 | RAP-db Os01g0187500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0006600 RBH 0.263695 3.695562 5.912740
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0006240 RBH 0.295995 1.143075 3.619409
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0006550 RBH 0.195700 1.708816 3.103149
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0006260 RBH 4.750277 6.413085 15.447327
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0079900 RBH 2.7927765 5.477164 7.9023565
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0006210 RBH 0.566588 0.104805 1.352865
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0080200 RBH 3.5346815 11.047866 11.270938
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0006010 RBH 0.159580 0.118016 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0006220 RBH 0.121806 2.793710 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0006270 RBH 0.000000 5.819687 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0006220 RBH 0.192152 0.110933 0.213595
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0006180 RBH 0.301167 0.640094 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G006220 RBH 0.284849 0.403314 4.376122
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0006120 RBH 1.236629 7.628105 4.085769
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Huazhong Agricultural University

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