Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0007340 | OGI:01039680 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:6429016-6429372 | ||||||||
| Gene Symbol | MSL29, OsMSL29, MSL04, OsMSL04, MSL4 | ||||||||||
| DNA seq | ATGTCCACGGCGGCTGCAGGTAGGAAGAAGAAGGGAGGCACACCTGAGGCCTCGGATGCGGCGGCGGCAGCCCCAGCCCGTACCCTAGGTCGTGGTGTTGGGTCGGCGACGGCGGCTCTCCCCTTCAGTCGTGGCGGCCGCGGTGTCGGGTTAGCGCCGCCGCCCCGCTCTCTCGGCCGCGGTGGCGGGCCAGCAGTGGCAGCAATCCCTCTAGGTGGCTTCCCCAGTTATTCAGCGTCCATGGATGGATTTCCCTTCCCTCCACCTTTTGATGGATCCTACGGAGGTGCATTCCCCAGCTCTTCAGCTTGGTTGGATGCGTCCGGTGGTGATGAATCTTCTCCTGGATCATGGTAA |
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| CDS seq | ATGTCCACGGCGGCTGCAGGTAGGAAGAAGAAGGGAGGCACACCTGAGGCCTCGGATGCGGCGGCGGCAGCCCCAGCCCGTACCCTAGGTCGTGGTGTTGGGTCGGCGACGGCGGCTCTCCCCTTCAGTCGTGGCGGCCGCGGTGTCGGGTTAGCGCCGCCGCCCCGCTCTCTCGGCCGCGGTGGCGGGCCAGCAGTGGCAGCAATCCCTCTAGGTGGCTTCCCCAGTTATTCAGCGTCCATGGATGGATTTCCCTTCCCTCCACCTTTTGATGGATCCTACGGAGGTGCATTCCCCAGCTCTTCAGCTTGGTTGGATGCGTCCGGTGGTGATGAATCTTCTCCTGGATCATGGTAA |
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| Protein seq | MSTAAAGRKKKGGTPEASDAAAAAPARTLGRGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPLGGFPSYSASMDGFPFPPPFDGSYGGAFPSSSAWLDASGGDESSPGSW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0007340 | OsARC_12g0007340.01 | Chr12 | 6429016 | 6429372 | + | NAM | ||
| CDS seq | ATGTCCACGGCGGCTGCAGGTAGGAAGAAGAAGGGAGGCACACCTGAGGCCTCGGATGCGGCGGCGGCAGCCCCAGCCCGTACCCTAGGTCGTGGTGTTGGGTCGGCGACGGCGGCTCTCCCCTTCAGTCGTGGCGGCCGCGGTGTCGGGTTAGCGCCGCCGCCCCGCTCTCTCGGCCGCGGTGGCGGGCCAGCAGTGGCAGCAATCCCTCTAGGTGGCTTCCCCAGTTATTCAGCGTCCATGGATGGATTTCCCTTCCCTCCACCTTTTGATGGATCCTACGGAGGTGCATTCCCCAGCTCTTCAGCTTGGTTGGATGCGTCCGGTGGTGATGAATCTTCTCCTGGATCATGGTAA
More
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| Protein seq | MSTAAAGRKKKGGTPEASDAAAAAPARTLGRGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPLGGFPSYSASMDGFPFPPPFDGSYGGAFPSSSAWLDASGGDESSPGSW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0549300 | SBH | 0.0 | 0.0 | 0.320443 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0549300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007330 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0096600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0101200 | RBH | 0 | 0 | 0.01697 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002530 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007100 | RBH | 0.0 | 0.0 | 0.0 |
