Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0022540 | OGI:01039680 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:29054288-29054650 | ||||||||
| Gene Symbol | MSL04, OsMSL04, MSL4 | ||||||||||
| DNA seq | atgtccacggcagctgcaggtaggaagaagaagggaggcacacctgaggcctcggatgcggcggcggcagccccagcccgtaccctaggtcgtggtgttgggtcggcgacggcggctctcccctttagtcgtggcggccgcggtgtcgggttagcgccgccgccccgctctctcggccgcggtggtgggccagcagtggcagcaatccctccaggcggcttccccaattattcagcgtccatggatggatttcccttccctccacctcttgatggatcctacggaggtggattccctagctcttcagcttggttggatgcgtccggtggtgatgaatcttctcctggatcaaagctccggtag |
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| CDS seq | atgtccacggcagctgcaggtaggaagaagaagggaggcacacctgaggcctcggatgcggcggcggcagccccagcccgtaccctaggtcgtggtgttgggtcggcgacggcggctctcccctttagtcgtggcggccgcggtgtcgggttagcgccgccgccccgctctctcggccgcggtggtgggccagcagtggcagcaatccctccaggcggcttccccaattattcagcgtccatggatggatttcccttccctccacctcttgatggatcctacggaggtggattccctagctcttcagcttggttggatgcgtccggtggtgatgaatcttctcctggatcaaagctccggtag |
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| Protein seq | MSTAAAGRKKKGGTPEASDAAAAAPARTLGRGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPPGGFPNYSASMDGFPFPPPLDGSYGGGFPSSSAWLDASGGDESSPGSKLR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0022540 | OsPr106_11g0022540.01 | Chr11 | 29054288 | 29054650 | + | NAM | ||
| CDS seq | atgtccacggcagctgcaggtaggaagaagaagggaggcacacctgaggcctcggatgcggcggcggcagccccagcccgtaccctaggtcgtggtgttgggtcggcgacggcggctctcccctttagtcgtggcggccgcggtgtcgggttagcgccgccgccccgctctctcggccgcggtggtgggccagcagtggcagcaatccctccaggcggcttccccaattattcagcgtccatggatggatttcccttccctccacctcttgatggatcctacggaggtggattccctagctcttcagcttggttggatgcgtccggtggtgatgaatcttctcctggatcaaagctccggtag
More
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| Protein seq | MSTAAAGRKKKGGTPEASDAAAAAPARTLGRGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPPGGFPNYSASMDGFPFPPPLDGSYGGGFPSSSAWLDASGGDESSPGSKLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0635000 | SBH | 1.420735 | 0.983842 | 0.209596 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41670 | RBH | 0.962674 | 0.697424 | 0.051754 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0635000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007330 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0355700 | SBH | 0.009688 | 0.0172445 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0418300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002530 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007100 | RBH | 0.0 | 0.0 | 0.0 |
