Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0549300 | OGI:01039680 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:20518681-20521502 | ||||||||
| Gene Symbol | MSL04, OsMSL04, MSL4 | ||||||||||
| DNA seq | GCAATAAAAGGCTAATATGCCCATCTTTTTCCCTAGATTATATATACTCCATATTAGTAGTATAGTGTATCACTGAACAAGCACCAAAATAGGCTTAGTGGATTGAGCATGAACAAAAATTATATAAACTGAGACATACACTGAACCTGCTGAAAGATTAAACATAACTTGCCAATAGCCAGAGTTTAGGATAGAAAAAGTGGAAAAGTTGGTTTAGGATAGAAAAAACAGCAAGATAATTTGGCATTCACCAGATAGCCAAAGATAGTAGCCTCCACTTGCAAAATTGACATATCTGTATCAATAACAGTAAGGTTCATATTAGACACTGAAGGGACTGCCTAAGACACTTGTAATCACACATATTTGTGGCAATAACATGTAAGTTTCAGATATTGCATAATTGTTTACCTGTTCAATCAGATTCAGGGAAAAGAGTTTTCATAAGACACTTCATCATACTAACTCGCTGCGCCTTTTCCTCAGCAGACATTGAACTTGTATCTTGTGAGATGAGGCTGTTATAAGTCTCCATCATCTTTGACTCTTTCTCAAGCTTCCTTCCTTCTTTGTACTCTTGTGCTGTAAGGTGGGCAATTTTTGTGGCCTCTAGCTTCTCAGAAGATATTTTTTCCTGTCTGTCCAATAGTTTCATGCGCTTGTCATTGTTTTCCTCCTGGAATTTGCTATATCTATCAAATTTGTCTAACTGAATAGGAGACTCCTTTGAGTGACCATCATCACTACTGCCCAAACCATTTGACTTGATTTTTGCATCTAGAGCTGCCTTTTTAGCGGCCTTCTGACCCATTGGTCGCTTTGGCATCTCATCAAAAGTGTCATCAGCTTCCTCAGAGTCTCCTTCCAAGTGAAATGATTTCCTTTTACGTGCATTCCTCAGGTTATCATTGTATGTTTTCCACTTTGAGACTTCTCGGCATATTTTCCAAACCTCCATCAGCACAAAGGGTCCTAGCTTTGCCTCTTTATTGTCATCCACATAAAACTTGTGTGCTGCATCAATCCACATTTGATTAGAATATCCACTTGTAAAAATTCTACGAGCCTTTACATAAGCACACTCAAAGAGATCCGTCCACCTATTAATCTTGTGCCATCTATCCTTGCATTGCTTCAGATTTCTTTTTCTGAGAGGTGGGGTAGTCTTGTTGTACGATTCAACAACTTCACCCCAATATTGGCCACCTCCCTTATCTGCTCCACATGTAGAGTCAGTTGAATGCTCTATCCAAGCACTCATCAATATGATATCCTCTTCCTCTGTCCACAGTATCCTCTTCTCAGTCCTAACATTGCCATTGCCATTTCCATCATCATTGCCTTGTAAAATTTCCACCTCTGGTGGTGAACTAGCATCAGCAATGTAAATAGGCGCACCAACCAAATGAGAGTTTTGTGCATGATTTCCAAAATAGCTCATGAAACCACCACGTGGATGTACATCTTTATCCCTGCAGGATAATAGCATATATTTGAGGCAAATAAATTGGATAATATCTTAGATCACAGGGATAATCTCTGCATTTGAGTTTGGCTCGCTTTTGCGAATTATCTCATGGCAGCTAGTTCATTTCAGTTACAGGGTTCTAGCTAACTACTGTGACCATATAACAAAGGAAGGGATTACTGACATTACTAATCAGGTAGTATAAACAAAGTAACATCTAGAGATAGCTTCATCCAATCCACAAGAAATTTATAATATAAACAACCATCAGATTTTTATTTCTCTCAAAAGTTGAATATAACCTCAATAACATTAGGATAACATGCTACATGATGCAAAAAATTCCAGAGTCAAGTAATTAAATTGTAGAATGCCTTTTCCAATCAGTACTAAATTAGCAGTTATAAACATTTAAGTAAACTGTGAATGGTTAAGTTGCAGAATGCAGAGAAGCTCATCACATGGCAGGGGATGTACAATAAAGCCTGATTTTTATGACTTTGTAACACTAAAATTAGTTCTAACACAGAACATAGTAGGCATTCAGATGGGAAAAAACAAGCATATTCTATGTTCTCTTGTGATGTAAGGGGCAATTTTTAACCCACAAGAATCAGTAGCAGTTCATGAATCAAACATCCACAAGGAAACAAATCACACAAGCATATTCTGCTGGAACAGAGAACAAGAATAAAAGATTACCATGATCCAGGAGAAGATTCATCACCACCGGACGCATCCAACCAAGCTGAAGAGCTGGGGAATCCACCTCTGTAGGATCCATCAAAAGGTGGAGGGAAGGGAAATCCATCCATGGACGCTGAATAACTGGGGAAGCCGCCTGGAGGGATTGCTGCCACTGCTGGCCCGCCACCACGGCCGAGAGAGCGGGGCGGCGGTGCTAACCCGACACCGCGGCCGCCACGACTGAAGGGGAGAGCCGCCGTCGCCGACCCAACACCACAACCTAGGGTACGGGCTGGGGCTGCCGCCGCCGCATCTGAGGCCTCAGGTGTGCCTCCCTTCTTCTTCCTACCTGCAGCCGCCGTGGACATCTCAGCAGCACCCAAATCAAGCGAGGGGAGTTGGAGATTGGGAGAGATTGCTGCGCTATATGCTGGAGCAAATTTCCTGGATTTCGCGGGCAAATTTCCCGGATTGGGGGAGTGGGAGGGGAGTTGGACGAACCTGGATTTTGCGGGGAAATTTCCCGCACGCGCGCTCTCCGCGCGAGATCCTGCCGCGCCGTCGCCTCGGGACGACGAGCTCGTACAACGGTGCTGAGCTTGCCTCTTCCGCCTCGGAGCACGGGTCGTCGCCGTCGCCTCGCGAGAGGACGCAGCTCCCGTCGCTT
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| CDS seq | AAGCGACGGGAGCTGCGTCCTCTCGCGAGGCGACGGCGACGACCCGTGCTCCGAGGCGGAAGAGGCAAGCTCAGCACCGTTGTACGAGCTCGTCGTCCCGAGGCGACGGCGCGGCAGGATCTCGCGCGGAGAGCGCGCGTGCGGGAAATTTCCCCGCAAAATCCAGGTAGGAAGAAGAAGGGAGGCACACCTGAGGCCTCAGATGCGGCGGCGGCAGCCCCAGCCCGTACCCTAGGTTGTGGTGTTGGGTCGGCGACGGCGGCTCTCCCCTTCAGTCGTGGCGGCCGCGGTGTCGGGTTAGCACCGCCGCCCCGCTCTCTCGGCCGTGGTGGCGGGCCAGCAGTGGCAGCAATCCCTCCAGGCGGCTTCCCCAGTTATTCAGCGTCCATGGATGGATTTCCCTTCCCTCCACCTTTTGATGGATCCTACAGAGGTGGATTCCCCAGCTCTTCAGCTTGGTTGGATGCGTCCGGTGGTGATGAATCTTCTCCTGGATCATGGGATAAAGATGTACATCCACGTGGTGGTTTCATGAGCTATTTTGGAAATCATGCACAAAACTCTCATTTGGTTGGTGCGCCTATTTACATTGCTGATGCTAGTTCACCACCAGAGGTGGAAATTTTACAAGGCAATGATGATGGAAATGGCAATGGCAATGTTAGGACTGAGAAGAGGATACTGTGGACAGAGGAAGAGGATATCATATTGATGAGTGCTTGGATAGAGCATTCAACTGACTCTACATGTGGAGCAGATAAGGGAGGTGGCCAATATTGGGGTGAAGTTGTTGAATCGTACAACAAGACTACCCCACCTCTCAGAAAAAGAAATCTGAAGCAATGCAAGGATAGATGGCACAAGATTAATAGGTGGACGGATCTCTTTGAGTGTGCTTATGTAAAGGCTCGTAGAATTTTTACAAGTGGATATTCTAATCAAATGTGGATTGATGCAGCACACAAGTTTTATGTGGATGACAATAAAGAGGCAAAGCTAGGACCCTTTGTGCTGATGGAGGTTTGGAAAATATGCCGAGAAGTCTCAAAGTGGAAAACATACAATGATAACCTGAGGAATGCACGTAAAAGGAAATCATTTCACTTGGAAGGAGACTCTGAGGAAGCTGATGACACTTTTGATGAGATGCCAAAGCGACCAATGGGTCAGAAGGCCGCTAAAAAGGCAGCTCTAGATGCAAAAATCAAGTCAAATGGTTTGGGCAGTAGTGATGATGGTCACTCAAAGGAGTCTCCTATTCAGTTAGACAAATTTGATAGATATAGCAAATTCCAGGAGGAAAACAATGACAAGCGCATGAAACTATTGGACAGACAGGAAAAAATATCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAAGAGTACAAAGAAGGAAGGAAGCTTGAGAAAGAGTCAAAGATGATGGAGACTTATAACAGCCTCATCTCACAAGATACAAGTTCAATGTCTGCTGAGGAAAAGGCGCAGCGAGTTAGTATGATGAAGTGTCTTATGAAAACTCTTTTCCCTGAATCTGATTGA
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| Protein seq | KRRELRPLARRRRRPVLRGGRGKLSTVVRARRPEATARQDLARRARVREISPQNPGRKKKGGTPEASDAAAAAPARTLGCGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPPGGFPSYSASMDGFPFPPPFDGSYRGGFPSSSAWLDASGGDESSPGSWDKDVHPRGGFMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNGNGNVRTEKRILWTEEEDIILMSAWIEHSTDSTCGADKGGGQYWGEVVESYNKTTPPLRKRNLKQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFVLMEVWKICREVSKWKTYNDNLRNARKRKSFHLEGDSEEADDTFDEMPKRPMGQKAAKKAALDAKIKSNGLGSSDDGHSKESPIQLDKFDRYSKFQEENNDKRMKLLDRQEKISSEKLEATKIAHLTAQEYKEGRKLEKESKMMETYNSLISQDTSSMSAEEKAQRVSMMKCLMKTLFPESD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0549300 | Os01t0549300-01 | Chr01 | 20518681 | 20521502 | - | irgsp1_rep | ||
| CDS seq | AAGCGACGGGAGCTGCGTCCTCTCGCGAGGCGACGGCGACGACCCGTGCTCCGAGGCGGAAGAGGCAAGCTCAGCACCGTTGTACGAGCTCGTCGTCCCGAGGCGACGGCGCGGCAGGATCTCGCGCGGAGAGCGCGCGTGCGGGAAATTTCCCCGCAAAATCCAGGTAGGAAGAAGAAGGGAGGCACACCTGAGGCCTCAGATGCGGCGGCGGCAGCCCCAGCCCGTACCCTAGGTTGTGGTGTTGGGTCGGCGACGGCGGCTCTCCCCTTCAGTCGTGGCGGCCGCGGTGTCGGGTTAGCACCGCCGCCCCGCTCTCTCGGCCGTGGTGGCGGGCCAGCAGTGGCAGCAATCCCTCCAGGCGGCTTCCCCAGTTATTCAGCGTCCATGGATGGATTTCCCTTCCCTCCACCTTTTGATGGATCCTACAGAGGTGGATTCCCCAGCTCTTCAGCTTGGTTGGATGCGTCCGGTGGTGATGAATCTTCTCCTGGATCATGGGATAAAGATGTACATCCACGTGGTGGTTTCATGAGCTATTTTGGAAATCATGCACAAAACTCTCATTTGGTTGGTGCGCCTATTTACATTGCTGATGCTAGTTCACCACCAGAGGTGGAAATTTTACAAGGCAATGATGATGGAAATGGCAATGGCAATGTTAGGACTGAGAAGAGGATACTGTGGACAGAGGAAGAGGATATCATATTGATGAGTGCTTGGATAGAGCATTCAACTGACTCTACATGTGGAGCAGATAAGGGAGGTGGCCAATATTGGGGTGAAGTTGTTGAATCGTACAACAAGACTACCCCACCTCTCAGAAAAAGAAATCTGAAGCAATGCAAGGATAGATGGCACAAGATTAATAGGTGGACGGATCTCTTTGAGTGTGCTTATGTAAAGGCTCGTAGAATTTTTACAAGTGGATATTCTAATCAAATGTGGATTGATGCAGCACACAAGTTTTATGTGGATGACAATAAAGAGGCAAAGCTAGGACCCTTTGTGCTGATGGAGGTTTGGAAAATATGCCGAGAAGTCTCAAAGTGGAAAACATACAATGATAACCTGAGGAATGCACGTAAAAGGAAATCATTTCACTTGGAAGGAGACTCTGAGGAAGCTGATGACACTTTTGATGAGATGCCAAAGCGACCAATGGGTCAGAAGGCCGCTAAAAAGGCAGCTCTAGATGCAAAAATCAAGTCAAATGGTTTGGGCAGTAGTGATGATGGTCACTCAAAGGAGTCTCCTATTCAGTTAGACAAATTTGATAGATATAGCAAATTCCAGGAGGAAAACAATGACAAGCGCATGAAACTATTGGACAGACAGGAAAAAATATCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAAGAGTACAAAGAAGGAAGGAAGCTTGAGAAAGAGTCAAAGATGATGGAGACTTATAACAGCCTCATCTCACAAGATACAAGTTCAATGTCTGCTGAGGAAAAGGCGCAGCGAGTTAGTATGATGAAGTGTCTTATGAAAACTCTTTTCCCTGAATCTGATTGA
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| Protein seq | KRRELRPLARRRRRPVLRGGRGKLSTVVRARRPEATARQDLARRARVREISPQNPGRKKKGGTPEASDAAAAAPARTLGCGVGSATAALPFSRGGRGVGLAPPPRSLGRGGGPAVAAIPPGGFPSYSASMDGFPFPPPFDGSYRGGFPSSSAWLDASGGDESSPGSWDKDVHPRGGFMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNGNGNVRTEKRILWTEEEDIILMSAWIEHSTDSTCGADKGGGQYWGEVVESYNKTTPPLRKRNLKQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFVLMEVWKICREVSKWKTYNDNLRNARKRKSFHLEGDSEEADDTFDEMPKRPMGQKAAKKAALDAKIKSNGLGSSDDGHSKESPIQLDKFDRYSKFQEENNDKRMKLLDRQEKISSEKLEATKIAHLTAQEYKEGRKLEKESKMMETYNSLISQDTSSMSAEEKAQRVSMMKCLMKTLFPESD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0549300 | RBH | 0.0 | 0.0 | 0.320443 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36850 | RBH | 0.0 | 0.0 | 0.080790 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0178900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021030 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020640 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020970 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015250 | SBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0348200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0101200 | RBH | 0 | 0 | 0.01697 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040940 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002460 | SBH | 0.0 | 0.0 | 0.0 |
