Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0006960 | OGI:12015420 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:5741567-5744615 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTGTTCCTTTCTCATGAGGCTTCCCCATACAATCAGGATTGTCATTGCAAAAGAAAGGCCAAATCCCAATGCAGTGAAGAGGAGAAGTACAACATCTATGGATTTCTCCGAAGTGTATGGCATCTCAGTTGGCCCTTTTGGGTTGTCACATTGTCTAGATAATGGTGGTCCACACAAGCCAGTGTTTCCCAGAAAGGAGCTATTGGAAAATGTGGAAAACTGATATGAGTCTGGTATTCTTCCAACCAACACATTGTAGGACAAGTTCAGTGTTGAAAGGAAGTTCAGTGATGCTAGCTCATTGGGGATCTCCCCAGAAAGCTTATTTGAGGAGAGGTCCAATGTCTCAAGTTGATTCAACCTGCCAAGCTGAGGTGGAATTGGCCCCGTAAGGGCATTGTGTGACATGTTGAGCCCATGAAGAAGAATAAGCTCCCCGATAGTCTCAGGGATGGTGCCATGGAATGCATTATTTGAGAAATCAATCAACACAAGGGTCCTCAAGATCTTGGAAATTGTCATGGAACTCCCTTTGTATGTAACTGTAGCAGTAAACTGGTATGTTTGCCCATGATAATATTGATTTTCCATAACTAATGTCTCATTATCAGACCTGGACATCATGGACTTGAGCATCTTAAACCATGCCTCTGGCAATGTTCCATTGAAGTTGTTTGAAGCCATATCAGCAATTCTCAGTTCAGTAAATTCACAGGTGTCTCCACCAGCCATATATGAAGGATCCATTACTTGTCCAGTGAACTTGTTAGATTTGAGGACAAGGACTTGAAGTTTGGGAAGTTCACTCATCCAACATGGGAAGGTATCACTAATCTGATTGCTTCCAATGTCGAGGAACTCCAAGTTCTTGCAAGCAACTAGAGATCTGGGTATCTTCCCTTCAATCAAATTGCCACTTAAATCTAGTGCCTCAAGTACACAACCTTCTTTAATGCTATCAGGTAATTTTCTAACAAGTTTATTTTCCTTTAGACTTAATACTTGTAATGCAGTCAGATCGTCCATTAAACAAGATGGAATTGGACCACTGAAGTTATTGTACGAGAGATCAATGAGTTGCAGTCTCCTAACAGCGGTACAGATTGATGATGGAATATTTCCAGAGAGTTTGTTTTTGGAGGCCTTGAAAACAAGAGTTTTACCAAGGTATGTTGAGTAATGAAGAGGCATGGCTGAGAATTGGTTGCTTGAGTAATCCAACGTGCTACTGCCATCTCGTGGTATCGGTATGGGCCCTTCAATACTGTTGAAACTGACATCAAAGTAGTCTATATGTAGAGGAAGCAAAGAATCAGGTCCAAGACTCGTAAAGTTATTGTGTGATATGTTCAGCAGGTAAAACTGCAATCCTTTCCATGTCCCCCATGCCCACTGAGGTATTGCTCCCTGGATTTGGTTACATGAAAGGTCAAGACTAGTGATCTCATTGAGACTCTTCAAGATGTTGGGGAAGGTAGATATGCTGCACGATGCTAAACGTAGGAATTTTATTTTTGGGAAGGACAACACCTTTGTACTATTTTCTCCATCTACCACAAGTAGTTCATTGTTTGAGAGATTCAGGACAGACAGATTTTCCAATTTTGAGAATGAGGTGATTTCCACAGTGCCAGTAAAATTGTTCGAATGAAGTAGGAGAGTTTGCAACCGTGTCAAATTTAAGATCTATGGAGGCATCTTCCCTGAAAACTTGCAGTTATACAATGCTAATTTTCTCAATTCCCTTAAGTTTCCTATTGAAGAAGGCACTTGTCCAGACAATCCACAGTTAGAGAACTGGAGAACTGTGAGAGAAGTCAGGTTTGAGATCCATGATGGAATGGATCCTACTAGTTGTAACCCGGACACTTCTAGCAAATCCAAGTATTTGAGGGTAGCTAATGAAGATGGAAGCATTCCAGATAAGCCGCTGCAACCGAGGTCCAACTTCCTAAGAGATTCTAGATTGCTAATGGAACTCGGTATTGTACCTGTGAAGTTTGTGAGACTGATGAAAACATTCTCCAGACTACTTGCCTGTGAGAAATTAGGCAGATGACCAGATAACCCCGGATTATTAATGATGTTAATTGTTATCAACTTCTTGTGGTGGAAGATGGTGGGAGGAAACCATCCGTCAAACTTGTCCCTAGACAACTGAAGAACAGTGAGGTTGGAGAAGGTTGCCAAGAACTCTGGCACTGAACCTGACAAGTGATTGTAGTGAAGCTCAATCGTATACAGAGATTGCATGGCCGATAACGATGTGCAGATGGGGCCTGAGTAAGCACCAGGGCAAACTTAGAACCTGAAGCTTCGGTGTGGACTTGGCTATGTGGTCACACCACTGATCGCCGTTGCCGGACATGTTCACCATTCCCATGTGGAGCTCCTCCAGGTTGGTGAGGTTTCCGAGCAAGGTCTCCAAGTTTGGCGCTGAGAGCTGCCTAAATAAGTCGGAGTTGTATGTCATTTTGCCGTTCTCGTTGTCGAACTCGACAATATAGAAGCTGGTGGAGAGGTCGAGGTAGACCAAGCTCGTGAGGCGCCCGATGGCTGATGGCACCTCGCCGGCGATGTTGGTGTCGGAAAGGTCAAGGTGGGTGAGTTCGGTGAGCTGCTCTAACCCGTTGATCACCGGGAGGATTGACATGCTAAAATTGTTACCAGAGAGGTCAAGGTACCTGAATGAGGTTAACCTGAACAGTGCAGGGTCGACGATGCTGGCTTGCAGGTGGTGGCCGCCCAAGTCGAGGGAGGTGACACGGCCATCTGCGCCGCCGCAGGCGATGCCGTCCCAGTGGCAGCAGTCTATGCCGGTGATCCATGACCGAAAGGCGGTGGAGTAGTCGCCGGCCTTCGCGTTGAAGGAGCGCTTCAGCTGGAGCAGCGCGGAGGCCTGGTCCGGAAGGCACGGAATTGGTGGTGGCACGGAGGAGCTCGTACGGTCAGTGAGGATGGTGGCGGCCTGGGCTTGCAGGACGATCTGCAGCACGGTTAGCAGTAAGGGAAGATGGCGAGCAACTCTCATGGAGGACGATGACAT
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| CDS seq | ATGTCATCGTCCTCCATGAGAGTTGCTCGCCATCTTCCCTTACTGCTAACCGTGCTGCAGATCGTCCTGCAAGCCCAGGCCGCCACCATCCTCACTGACCGTACGAGCTCCTCCGTGCCACCACCAATTCCGTGCCTTCCGGACCAGGCCTCCGCGCTGCTCCAGCTGAAGCGCTCCTTCAACGCGAAGGCCGGCGACTACTCCACCGCCTTTCGGTCATGGATCACCGGCATAGACTGCTGCCACTGGGACGGCATCGCCTGCGGCGGCGCAGATGGCCGTGTCACCTCCCTCGACTTGGGCGGCCACCACCTGCAAGCCAGCATCGTCGACCCTGCACTGTTCAGGTTAACCTCATTCAGGTACCTTGACCTCTCTGGTAACAATTTTAGCATGTCAATCCTCCCGGTGATCAACGGGTTAGAGCAGCTCACCGAACTCACCCACCTTGACCTTTCCGACACCAACATCGCCGGCGAGGTGCCATCAGCCATCGGGCGCCTCACGAGCTTGGTCTACCTCGACCTCTCCACCAGCTTCTATATTGTCGAGTTCGACAACGAGAACGGCAAAATGACATACAACTCCGACTTATTTAGGCAGCTCTCAGCGCCAAACTTGGAGACCTTGCTCGGAAACCTCACCAACCTGGAGGAGCTCCACATGGGAATGGTGAACATGTCCGGCAACGGCGATCAGTGGTGTGACCACATAGCCAAGTCCACACCGAAGCTTCAGGGAGCAATACCTCAGTGGGCATGGGGGACATGGAAAGGATTGCAGTTTTACCTGCTGAACATATCACACAATAACTTTACGAGTCTTGGACCTGATTCTTTGCTTCCTCTACATATAGACTACTTTGATGTCAGTTTCAACAGTATTGAAGGGCCCATACCGATACCACGAGATGGCAGTAGCACGTTGGATTACTCAAGCAACCAATTCTCAGCCATGCCTCTTCATTACTCAACATACCTTGGTAAAACTCTTGTTTTCAAGGCCTCCAAAAACAAACTCTCTGGAAATATTCCATCATCAATCTGTACCGCTGTTAGGAGACTGCAACTCATTGATCTCTCGTACAATAACTTCAGTGGTCCAATTCCATCTTGTTTAATGGACGATCTGACTGCATTACAAGTATTAAGTCTAAAGGAAAATAAACTTGTTAGAAAATTACCTGATAGCATTAAAGAAGGTTGTGTACTTGAGGCACTAGATTTAAGTGGCAATTTGATTGAAGGGAAGATACCCAGATCTCTAGTTGCTTGCAAGAACTTGGAGTTCCTCGACATTGGAAGCAATCAGATTAGTGATACCTTCCCATGTTGGATGAGTGAACTTCCCAAACTTCAAGTCCTTGTCCTCAAATCTAACAAGTTCACTGGACAAGTAATGGATCCTTCATATATGGCTGGTGGAGACACCTGTGAATTTACTGAACTGAGAATTGCTGATATGGCTTCAAACAACTTCAATGGAACATTGCCAGAGGCATGGTTTAAGATGCTCAAGTCCATGATGTCCAGGTCTGATAATGAGACATTAGTTATGGAAAATCAATATTATCATGGGCAAACATACCAGTTTACTGCTACAGTTACATACAAAGGGAGTTCCATGACAATTTCCAAGATCTTGAGGACCCTTGTGTTGATTGATTTCTCAAATAATGCATTCCATGGCACCATCCCTGAGACTATCGGGGAGCTTATTCTTCTTCATGGGCTCAACATGTCACACAATGCCCTTACGGGGCCAATTCCACCTCAGCTTGGCAGACAATGTGACAACCCAAAAGGGCCAACTGAGATGCCATACACTTCGGAGAAATCCATAGATGTTGTACTTCTCCTCTTCACTGCATTGGGATTTGGCCTTTCTTTTGCAATGACAATCCTGATTGTATGGGGAAGCCTCATGAGAAAGGAACACTGA
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| Protein seq | MSSSSMRVARHLPLLLTVLQIVLQAQAATILTDRTSSSVPPPIPCLPDQASALLQLKRSFNAKAGDYSTAFRSWITGIDCCHWDGIACGGADGRVTSLDLGGHHLQASIVDPALFRLTSFRYLDLSGNNFSMSILPVINGLEQLTELTHLDLSDTNIAGEVPSAIGRLTSLVYLDLSTSFYIVEFDNENGKMTYNSDLFRQLSAPNLETLLGNLTNLEELHMGMVNMSGNGDQWCDHIAKSTPKLQGAIPQWAWGTWKGLQFYLLNISHNNFTSLGPDSLLPLHIDYFDVSFNSIEGPIPIPRDGSSTLDYSSNQFSAMPLHYSTYLGKTLVFKASKNKLSGNIPSSICTAVRRLQLIDLSYNNFSGPIPSCLMDDLTALQVLSLKENKLVRKLPDSIKEGCVLEALDLSGNLIEGKIPRSLVACKNLEFLDIGSNQISDTFPCWMSELPKLQVLVLKSNKFTGQVMDPSYMAGGDTCEFTELRIADMASNNFNGTLPEAWFKMLKSMMSRSDNETLVMENQYYHGQTYQFTATVTYKGSSMTISKILRTLVLIDFSNNAFHGTIPETIGELILLHGLNMSHNALTGPIPPQLGRQCDNPKGPTEMPYTSEKSIDVVLLLFTALGFGLSFAMTILIVWGSLMRKEH |
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| Function | Receptor-like protein 43 [UniProtKB/Swiss-Prot:Q9LJW7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0006960 | OsARC_12g0006960.01 | Chr12 | 5741567 | 5744615 | - | NAM | ||
| CDS seq | ATGTCATCGTCCTCCATGAGAGTTGCTCGCCATCTTCCCTTACTGCTAACCGTGCTGCAGATCGTCCTGCAAGCCCAGGCCGCCACCATCCTCACTGACCGTACGAGCTCCTCCGTGCCACCACCAATTCCGTGCCTTCCGGACCAGGCCTCCGCGCTGCTCCAGCTGAAGCGCTCCTTCAACGCGAAGGCCGGCGACTACTCCACCGCCTTTCGGTCATGGATCACCGGCATAGACTGCTGCCACTGGGACGGCATCGCCTGCGGCGGCGCAGATGGCCGTGTCACCTCCCTCGACTTGGGCGGCCACCACCTGCAAGCCAGCATCGTCGACCCTGCACTGTTCAGGTTAACCTCATTCAGGTACCTTGACCTCTCTGGTAACAATTTTAGCATGTCAATCCTCCCGGTGATCAACGGGTTAGAGCAGCTCACCGAACTCACCCACCTTGACCTTTCCGACACCAACATCGCCGGCGAGGTGCCATCAGCCATCGGGCGCCTCACGAGCTTGGTCTACCTCGACCTCTCCACCAGCTTCTATATTGTCGAGTTCGACAACGAGAACGGCAAAATGACATACAACTCCGACTTATTTAGGCAGCTCTCAGCGCCAAACTTGGAGACCTTGCTCGGAAACCTCACCAACCTGGAGGAGCTCCACATGGGAATGGTGAACATGTCCGGCAACGGCGATCAGTGGTGTGACCACATAGCCAAGTCCACACCGAAGCTTCAGGGAGCAATACCTCAGTGGGCATGGGGGACATGGAAAGGATTGCAGTTTTACCTGCTGAACATATCACACAATAACTTTACGAGTCTTGGACCTGATTCTTTGCTTCCTCTACATATAGACTACTTTGATGTCAGTTTCAACAGTATTGAAGGGCCCATACCGATACCACGAGATGGCAGTAGCACGTTGGATTACTCAAGCAACCAATTCTCAGCCATGCCTCTTCATTACTCAACATACCTTGGTAAAACTCTTGTTTTCAAGGCCTCCAAAAACAAACTCTCTGGAAATATTCCATCATCAATCTGTACCGCTGTTAGGAGACTGCAACTCATTGATCTCTCGTACAATAACTTCAGTGGTCCAATTCCATCTTGTTTAATGGACGATCTGACTGCATTACAAGTATTAAGTCTAAAGGAAAATAAACTTGTTAGAAAATTACCTGATAGCATTAAAGAAGGTTGTGTACTTGAGGCACTAGATTTAAGTGGCAATTTGATTGAAGGGAAGATACCCAGATCTCTAGTTGCTTGCAAGAACTTGGAGTTCCTCGACATTGGAAGCAATCAGATTAGTGATACCTTCCCATGTTGGATGAGTGAACTTCCCAAACTTCAAGTCCTTGTCCTCAAATCTAACAAGTTCACTGGACAAGTAATGGATCCTTCATATATGGCTGGTGGAGACACCTGTGAATTTACTGAACTGAGAATTGCTGATATGGCTTCAAACAACTTCAATGGAACATTGCCAGAGGCATGGTTTAAGATGCTCAAGTCCATGATGTCCAGGTCTGATAATGAGACATTAGTTATGGAAAATCAATATTATCATGGGCAAACATACCAGTTTACTGCTACAGTTACATACAAAGGGAGTTCCATGACAATTTCCAAGATCTTGAGGACCCTTGTGTTGATTGATTTCTCAAATAATGCATTCCATGGCACCATCCCTGAGACTATCGGGGAGCTTATTCTTCTTCATGGGCTCAACATGTCACACAATGCCCTTACGGGGCCAATTCCACCTCAGCTTGGCAGACAATGTGACAACCCAAAAGGGCCAACTGAGATGCCATACACTTCGGAGAAATCCATAGATGTTGTACTTCTCCTCTTCACTGCATTGGGATTTGGCCTTTCTTTTGCAATGACAATCCTGATTGTATGGGGAAGCCTCATGAGAAAGGAACACTGA
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| Protein seq | MSSSSMRVARHLPLLLTVLQIVLQAQAATILTDRTSSSVPPPIPCLPDQASALLQLKRSFNAKAGDYSTAFRSWITGIDCCHWDGIACGGADGRVTSLDLGGHHLQASIVDPALFRLTSFRYLDLSGNNFSMSILPVINGLEQLTELTHLDLSDTNIAGEVPSAIGRLTSLVYLDLSTSFYIVEFDNENGKMTYNSDLFRQLSAPNLETLLGNLTNLEELHMGMVNMSGNGDQWCDHIAKSTPKLQGAIPQWAWGTWKGLQFYLLNISHNNFTSLGPDSLLPLHIDYFDVSFNSIEGPIPIPRDGSSTLDYSSNQFSAMPLHYSTYLGKTLVFKASKNKLSGNIPSSICTAVRRLQLIDLSYNNFSGPIPSCLMDDLTALQVLSLKENKLVRKLPDSIKEGCVLEALDLSGNLIEGKIPRSLVACKNLEFLDIGSNQISDTFPCWMSELPKLQVLVLKSNKFTGQVMDPSYMAGGDTCEFTELRIADMASNNFNGTLPEAWFKMLKSMMSRSDNETLVMENQYYHGQTYQFTATVTYKGSSMTISKILRTLVLIDFSNNAFHGTIPETIGELILLHGLNMSHNALTGPIPPQLGRQCDNPKGPTEMPYTSEKSIDVVLLLFTALGFGLSFAMTILIVWGSLMRKEH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0215950 | SBH | 1.611026 | 0.375488 | 1.967587 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11370 | SBH | 0.598032 | 0.140762 | 0.256654 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0215950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006920 | SBH | 0.000000 | 0.0 | 1.701963 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007010 | SBH | 0.045362 | 0.000000 | 0.369254 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006980 | SBH | 0.0 | 0.097104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006830 | SBH | 0.712860 | 9.405777 | 8.661645 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0089100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006810 | SBH | 0.032944 | 0.0 | 0.613373 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094900 | SBH | 0.209193 | 2.515343 | 2.3913045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006700 | SBH | 0.033740 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006980 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006830 | SBH | 1.982386 | 3.527051 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006870 | SBH | 0.062552 | 0.0 | 0.306906 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006730 | RBH | 0.043974 | 0.518187 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006800 | SBH | 0.000000 | 0.0 | 0.313244 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006830 | SBH | 0.708414 | 0.0 | 2.183305 |
