Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0007020 | OGI:11017320 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:5772305-5773549 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGAGCCCTAGATCTGTGGTGCTCTGCACATAGGAAACATAGTAAAGGAAACCAGTTGGTGCTTCACCAAGCGATACAGGTGTCAGTTATGGACTTATTGGCATTAATGGAAGCTCGATAGTAAAGGAGTTAGAATTTGACACTGTATGTTGAAGGATGTGGGGGCATAAGAGGTAATACATCATAGAATTCAACATGGTATCAGATACATGTGTGGTTTAATTGCCTATCTTGATGGGGAAATGCTCGAAATTTAGTCTAAGGCTCTGTTCGAATGTCATGGTTCCCAACTCCCCCTCTTCGTTTTCCGCGCGCACGCTTTTCAAACTGCTAAACGGTGTGTTTTTTGCAAAAGTTTGTATACGAAAGTTGCTTTAAAAAATCATATTGATCTATTTTTGAAAAAAAAATTAACAAATAATTAATTAATCACGCACTAATGGACTGCTCCGTTTTCCGTGCAGAGGAGTTGGGTTCTCAACCCTATCTAACGAACGCAGCCTAAGAGGAGTCCTACACACTTTTTTTTTTTGAAAGGTTCCAACACTACTACTTGAGTTCCCCAAATTATTAGGAGTTATTAAGAGAACTCTACAGGACCATTCCCGAACATTTCTATACATCATAAGTTTAGATAGGCACACTAACATGAGGGAGTAATATGCTGGTCTTTTTTCTCTTATTTACACGAACTTGTGAGTTTTCACGAATGTAATCTCAGGCATCTTATCTGTAATGTTTATTTTGGGTATGACCAGCACGGTAAAACAGACCTTTTACTTTTTAGTGAGCTTTAATGGCATTAGGCAACTAAACTACGCATATTTTTGGGCTGCTTCATCAACATATAAGAACTCACTAGTTGTATCCTCATGAAAGAATCCTCTGGAGTGATACAGGAAATGAATAAATTACACAATGTGATGACAGAATGTAATAGGCGCAGAACAGGAACATTATTAATATGAAGATGGGTTTGGCAGGATACATACTTTTCTTTTTATGTGAGCCAGCTTCATCACATTCTCATCTGCTGTACACCACAACTTCAATTCAGGACAGGCTGCAATATCCAGAATTAAGAGATTGGTGAGTTGTTGTATGCTCTCCGGTAAAAACTTGATGCCCCCACAATTCCAGATACTAAGTTCAGTGAGAGCGGTAAGGCCTCCCAGCCGTTCTGGGAGTTGTGGAATGCTTCCGCAATAACCCAAATGCAGCGAACGGAGGGAGTGCAGTGGCAT
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| CDS seq | ATGCCACTGCACTCCCTCCGTTCGCTGCATTTGGGTTATTGCGGAAGCATTCCACAACTCCCAGAACGGCTGGGAGGCCTTACCGCTCTCACTGAACTTAGTATCTGGAATTGTGGGGGCATCAAGTTTTTACCGGAGAGCATACAACAACTCACCAATCTCTTAATTCTGGATATTGCAGCCTGTCCTGAATTGAAGTTGTGGTGTACAGCAGATGAGAATGTGATGAAGCTGGCTCACATAAAAAGAAAAAGCACCACAGATCTAGGGCTCTAG |
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| Protein seq | MPLHSLRSLHLGYCGSIPQLPERLGGLTALTELSIWNCGGIKFLPESIQQLTNLLILDIAACPELKLWCTADENVMKLAHIKRKSTTDLGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0007020 | OsARC_11g0007020.01 | Chr11 | 5772305 | 5773549 | - | NAM | ||
| CDS seq | ATGCCACTGCACTCCCTCCGTTCGCTGCATTTGGGTTATTGCGGAAGCATTCCACAACTCCCAGAACGGCTGGGAGGCCTTACCGCTCTCACTGAACTTAGTATCTGGAATTGTGGGGGCATCAAGTTTTTACCGGAGAGCATACAACAACTCACCAATCTCTTAATTCTGGATATTGCAGCCTGTCCTGAATTGAAGTTGTGGTGTACAGCAGATGAGAATGTGATGAAGCTGGCTCACATAAAAAGAAAAAGCACCACAGATCTAGGGCTCTAG
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| Protein seq | MPLHSLRSLHLGYCGSIPQLPERLGGLTALTELSIWNCGGIKFLPESIQQLTNLLILDIAACPELKLWCTADENVMKLAHIKRKSTTDLGL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0213700 | SBH | 0.523300 | 0.590417 | 1.194303 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10760 | SBH | 0.364117 | 0.563477 | 0.341354 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0213700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007080 | RBH | 0.030859 | 0.135391 | 0.760307 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007000 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007140 | RBH | 0.064182 | 0.059509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007120 | SBH | 5.265685 | 12.773895 | 6.666517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092600 | SBH | 2.596614 | 18.283927 | 14.3694515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007110 | SBH | 0.170104 | 0.251311 | 0.873241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0097600 | RBH | 5.716607 | 4.247566 | 0.013242 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007260 | SBH | 0.212022 | 0.070946 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007010 | SBH | 1.113749 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006970 | RBH | 1.186617 | 7.702504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007010 | RBH | 0.210385 | 0.0 | 0.077995 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007230 | SBH | 0.106816 | 2.635762 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007120 | RBH | 3.073140 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007110 | SBH | 0.269171 | 3.348744 | 4.076067 |
