Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0027310 | OGI:04092990 | 2/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:30541800-30544552 | ||||||||
| Gene Symbol | XA1, Xa1(Xe), Xe, Xa1, Xa-1, RGAf | ||||||||||
| DNA seq | ATGGAATCCATAAAAAATCTGATCATGAGAAATAAATCCAATGGTATAACCGTCCTGCCAATTGTAGGCATCGGAGGGATAGGGAAAACCACTCTGTCCCAATGTGTCTACAATGATCCGGAAATCGGAAATCAGTTTGAGATCAAGATATGGGTCCATGTATCTCATAAATTTGATGTGGTTAGGATTACAAGGGAGATTTTAGAGTGCGTCTCCCACCAGAGTTATCAAGGAATAAGCAACTTTAACATGCTTCAGCAGGATCTTGAGAAACACATGAAATCTAAGAAGTTCCTGATTGTTTTGGATGATGTCTGGGATGTCACTACAGAAGAATGTTGGAATAAACTACTGGGTCCTTTAAGACCTAATCATGTGAATACACCACAAGAAGTAACAGGTAATATGATCATTGTGACAACTCGAATACAAAATTTCGCCAAAAGGTGTGGAACGGCAGGATCAATAAATTTAAAAGCTCTGCAAGATGGTGATATATGGTCACTATTTAAAGCATATGCATTTAGTAGTAATGATCAACATGGTAGTAATCCAAATTTGGAGAATCTCGGGAGGAAAATAGTTAAGGAACTAAAAGGCAACCCCTTGGCAGCAAAAACCGTGGGCTCCCTACTACAAAGGAATCTTACTGAAGACCATTGGATCAGCATTATAGAGAACAAAGAATGGCAGTCCCTGAAACATACTGATGGCATCATGCATGTGCTGAAGTTCAGTTATGATTATCTACCTAACCAACTACAACAATCTTTCTCTTATTGTTCTCTTTTCCCCAAGGGTTACTATTTCCGTAAAGCACAACTGATACAAATATGGATTGCTCAAGGATTTGTAGAAAAATCCAGTGAGAAGTTGGAGCATAAAGGATGCAAATATCTAGCTGAGTTGGTGAACTCTGGTTTCTTTCAGCAAGCTGAAAGTTGTTCGTCTTCATCAGAAGTTTTTGTTATGCATGATCTTATGCATGATTTAGCACGAATGGTTTCACAAACAGAATGTGCAACTATAGATGACTCAGAGTGCAGAAAGTTAGCACCGAGTATACGTCATTTGTCAATAGTAACTCATTCTTCATATCGCTGGGATCAAAATGGAAAAATATTTCGTAACGAGGAGTTTGAGAAAAGTTTGCTGAAAGTTACGTCAAGGAATAAGTTGAGGACATTGGTACTTATTGGGCAATATGACCCTCATTTTTTTAAATCCTTCCAAGATGCTTTCAAGGAGGCTCAATATTTGCGACTGCTGCATATCACTGAAAGTTATGATGGTCTTGATTCCTTTCTTTCCAGTTTGGTGAACACTACACATCTCAGGTATCTAAGACTTGAGAGAGTAGGGTCCAACAGAGCTCTGAGCAAGTGTTACCATCTTCAAGTACTAGATATTGGTCCAAATGGATTTCTTGTTATACCTGATGACATAAATAATCTTGTCAGCCTGCGGCATCTTGTTGCACAAAATAAAAATAGAGTGTGCTCTTCCATTGCTAGCATAGGTGAAATGGCCTCACTTCAGAAACTAACAAATTTCAAGGTTGAGAATTCTATTGGCTTTGAAATAACACAACTTCAACGCATGAGTGAGCTTGTAGAACTGCGTGTGTCTCAACTTGAAAATGTTAGAACTAAGCAGGAGGCCAGTGGGGCAAGCCTGAAAGACAAACATCACTTGGAGAGACTACATTTGTTCTGGAAGGGTGTACGGAATGGGTATGACAGTGATGAGAGCTACAATGAATACGACAGTGATTGGAGCTTTGAAAATGAATGCGATGGTAACATGATACCCGAACCTTCTATGCACTCAGAAACAGAAGGGGAGAGACTGCAAATGAGTGATAGCAATGGTGCCCCTATTTTAGATCATATTCCAGACATAGCAAGTGAGGTGCTTGAAGGTCTTGAACCACATTACAACCTCAAATATCTACGGATATCTTGGTACAATGGAGCTAAAGCTCCAACTTGGCTTGCCACTTCACTTACCTATCTGCAAACACTCCGTCTAGAAAATTGTGGAGAATGGCAAAGACTTCCTTTAGAAAGGTTATCACTAATTCACTACTTAGAAAGCTTGTGTTGATCGAAATGAAGAATGCATCGGTACTCTCAATTCGTTCACCGGAGGAGATTACTCTAATTGGGATGCAAAAGCTTCACACGTGCTCCTGCACTTCCATGGTGGACTTGAACTCCAGTTTAAGGGTCCTGAAGATTAAAAGGTGCCCTGTTCTGAAGGTCTTCCCGTTGTTTGATAACTGCCATAACTTGGGGTGCTCAAGGTTGCCCCACCTCAGCACGCTCATCATCCATGATTGTCCTGATTTGACTGTGCCTCGTCCTTTCCCCCCTTCAACAATTGTTTCAAAGTTATCCATCAAGGGATTTTTAACACTTCCAACGATGACGACATACGGAGGAACAACATTAGCAATTGGGTCATTTTCTGATAAGCTGACAGTGATGGATAAAACAATGTTGTCGTACCTTAGGTTTGTAACTACTTTGCAGATATCAAATTACCAAAATCTGAGGTATATTTCGTTGAAAGGACTTAGGCAACTCATCCATTTAAAGAGTCTGTCCATATGTTACTGTCCAAATCTTTTCTCTTCAGATGTTCCGCAAGAGCCTACTTTTACCTGTGAAGACATGGTAGCTGGAAATCTCAATGACCACCCATCTCTTGAACTTCTCAGTATTGGAAATTGTGGAATAATGGGGAAGTGA
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| CDS seq | ATGGAATCCATAAAAAATCTGATCATGAGAAATAAATCCAATGGTATAACCGTCCTGCCAATTGTAGGCATCGGAGGGATAGGGAAAACCACTCTGTCCCAATGTGTCTACAATGATCCGGAAATCGGAAATCAGTTTGAGATCAAGATATGGGTCCATGTATCTCATAAATTTGATGTGGTTAGGATTACAAGGGAGATTTTAGAGTGCGTCTCCCACCAGAGTTATCAAGGAATAAGCAACTTTAACATGCTTCAGCAGGATCTTGAGAAACACATGAAATCTAAGAAGTTCCTGATTGTTTTGGATGATGTCTGGGATGTCACTACAGAAGAATGTTGGAATAAACTACTGGGTCCTTTAAGACCTAATCATGTGAATACACCACAAGAAGTAACAGGTAATATGATCATTGTGACAACTCGAATACAAAATTTCGCCAAAAGGTGTGGAACGGCAGGATCAATAAATTTAAAAGCTCTGCAAGATGGTGATATATGGTCACTATTTAAAGCATATGCATTTAGTAGTAATGATCAACATGGTAGTAATCCAAATTTGGAGAATCTCGGGAGGAAAATAGTTAAGGAACTAAAAGGCAACCCCTTGGCAGCAAAAACCGTGGGCTCCCTACTACAAAGGAATCTTACTGAAGACCATTGGATCAGCATTATAGAGAACAAAGAATGGCAGTCCCTGAAACATACTGATGGCATCATGCATGTGCTGAAGTTCAGTTATGATTATCTACCTAACCAACTACAACAATCTTTCTCTTATTGTTCTCTTTTCCCCAAGGGTTACTATTTCCGTAAAGCACAACTGATACAAATATGGATTGCTCAAGGATTTGTAGAAAAATCCAGTGAGAAGTTGGAGCATAAAGGATGCAAATATCTAGCTGAGTTGGTGAACTCTGGTTTCTTTCAGCAAGCTGAAAGTTGTTCGTCTTCATCAGAAGTTTTTGTTATGCATGATCTTATGCATGATTTAGCACGAATGGTTTCACAAACAGAATGTGCAACTATAGATGACTCAGAGTGCAGAAAGTTAGCACCGAGTATACGTCATTTGTCAATAGTAACTCATTCTTCATATCGCTGGGATCAAAATGGAAAAATATTTCGTAACGAGGAGTTTGAGAAAAGTTTGCTGAAAGTTACGTCAAGGAATAAGTTGAGGACATTGGTACTTATTGGGCAATATGACCCTCATTTTTTTAAATCCTTCCAAGATGCTTTCAAGGAGGCTCAATATTTGCGACTGCTGCATATCACTGAAAGTTATGATGGTCTTGATTCCTTTCTTTCCAGTTTGGTGAACACTACACATCTCAGGTATCTAAGACTTGAGAGAGTAGGGTCCAACAGAGCTCTGAGCAAGTGTTACCATCTTCAAGTACTAGATATTGGTCCAAATGGATTTCTTGTTATACCTGATGACATAAATAATCTTGTCAGCCTGCGGCATCTTGTTGCACAAAATAAAAATAGAGTGTGCTCTTCCATTGCTAGCATAGGTGAAATGGCCTCACTTCAGAAACTAACAAATTTCAAGGTTGAGAATTCTATTGGCTTTGAAATAACACAACTTCAACGCATGAGTGAGCTTGTAGAACTGCGTGTGTCTCAACTTGAAAATGTTAGAACTAAGCAGGAGGCCAGTGGGGCAAGCCTGAAAGACAAACATCACTTGGAGAGACTACATTTGTTCTGGAAGGGTGTACGGAATGGGTATGACAGTGATGAGAGCTACAATGAATACGACAGTGATTGGAGCTTTGAAAATGAATGCGATGGTAACATGATACCCGAACCTTCTATGCACTCAGAAACAGAAGGGGAGAGACTGCAAATGAGTGATAGCAATGGTGCCCCTATTTTAGATCATATTCCAGACATAGCAAGTGAGGTGCTTGAAGGTCTTGAACCACATTACAACCTCAAATATCTACGGATATCTTGGTACAATGGAGCTAAAGCTCCAACTTGGCTTGCCACTTCACTTACCTATCTGCAAACACTCCGTCTAGAAAATTGTGGAGAATGGCAAAGACTTCCTTTAGAAAGTTTAAGGGTCCTGAAGATTAAAAGGTGCCCTGTTCTGAAGGTCTTCCCGTTGTTTGATAACTGCCATAACTTGGGGTGCTCAAGGTTGCCCCACCTCAGCACGCTCATCATCCATGATTGTCCTGATTTGACTGTGCCTCGTCCTTTCCCCCCTTCAACAATTGTTTCAAAGTTATCCATCAAGGGATTTTTAACACTTCCAACGATGACGACATACGGAGGAACAACATTAGCAATTGGGTCATTTTCTGATAAGCTGACAGTGATGGATAAAACAATGTTGTCGTACCTTAGGTTTGTAACTACTTTGCAGATATCAAATTACCAAAATCTGAGGTATATTTCGTTGAAAGGACTTAGGCAACTCATCCATTTAAAGAGTCTGTCCATATGTTACTGTCCAAATCTTTTCTCTTCAGATGTTCCGCAAGAGCCTACTTTTACCTGTGAAGACATGGTAGCTGGAAATCTCAATGACCACCCATCTCTTGAACTTCTCAGTATTGGAAATTGTGGAATAATGGGGAAGTGA
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| Protein seq | MESIKNLIMRNKSNGITVLPIVGIGGIGKTTLSQCVYNDPEIGNQFEIKIWVHVSHKFDVVRITREILECVSHQSYQGISNFNMLQQDLEKHMKSKKFLIVLDDVWDVTTEECWNKLLGPLRPNHVNTPQEVTGNMIIVTTRIQNFAKRCGTAGSINLKALQDGDIWSLFKAYAFSSNDQHGSNPNLENLGRKIVKELKGNPLAAKTVGSLLQRNLTEDHWISIIENKEWQSLKHTDGIMHVLKFSYDYLPNQLQQSFSYCSLFPKGYYFRKAQLIQIWIAQGFVEKSSEKLEHKGCKYLAELVNSGFFQQAESCSSSSEVFVMHDLMHDLARMVSQTECATIDDSECRKLAPSIRHLSIVTHSSYRWDQNGKIFRNEEFEKSLLKVTSRNKLRTLVLIGQYDPHFFKSFQDAFKEAQYLRLLHITESYDGLDSFLSSLVNTTHLRYLRLERVGSNRALSKCYHLQVLDIGPNGFLVIPDDINNLVSLRHLVAQNKNRVCSSIASIGEMASLQKLTNFKVENSIGFEITQLQRMSELVELRVSQLENVRTKQEASGASLKDKHHLERLHLFWKGVRNGYDSDESYNEYDSDWSFENECDGNMIPEPSMHSETEGERLQMSDSNGAPILDHIPDIASEVLEGLEPHYNLKYLRISWYNGAKAPTWLATSLTYLQTLRLENCGEWQRLPLESLRVLKIKRCPVLKVFPLFDNCHNLGCSRLPHLSTLIIHDCPDLTVPRPFPPSTIVSKLSIKGFLTLPTMTTYGGTTLAIGSFSDKLTVMDKTMLSYLRFVTTLQISNYQNLRYISLKGLRQLIHLKSLSICYCPNLFSSDVPQEPTFTCEDMVAGNLNDHPSLELLSIGNCGIMGK |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0027310 | OsARC_04g0027310.01 | Chr04 | 30541800 | 30544552 | + | NAM | ||
| CDS seq | ATGGAATCCATAAAAAATCTGATCATGAGAAATAAATCCAATGGTATAACCGTCCTGCCAATTGTAGGCATCGGAGGGATAGGGAAAACCACTCTGTCCCAATGTGTCTACAATGATCCGGAAATCGGAAATCAGTTTGAGATCAAGATATGGGTCCATGTATCTCATAAATTTGATGTGGTTAGGATTACAAGGGAGATTTTAGAGTGCGTCTCCCACCAGAGTTATCAAGGAATAAGCAACTTTAACATGCTTCAGCAGGATCTTGAGAAACACATGAAATCTAAGAAGTTCCTGATTGTTTTGGATGATGTCTGGGATGTCACTACAGAAGAATGTTGGAATAAACTACTGGGTCCTTTAAGACCTAATCATGTGAATACACCACAAGAAGTAACAGGTAATATGATCATTGTGACAACTCGAATACAAAATTTCGCCAAAAGGTGTGGAACGGCAGGATCAATAAATTTAAAAGCTCTGCAAGATGGTGATATATGGTCACTATTTAAAGCATATGCATTTAGTAGTAATGATCAACATGGTAGTAATCCAAATTTGGAGAATCTCGGGAGGAAAATAGTTAAGGAACTAAAAGGCAACCCCTTGGCAGCAAAAACCGTGGGCTCCCTACTACAAAGGAATCTTACTGAAGACCATTGGATCAGCATTATAGAGAACAAAGAATGGCAGTCCCTGAAACATACTGATGGCATCATGCATGTGCTGAAGTTCAGTTATGATTATCTACCTAACCAACTACAACAATCTTTCTCTTATTGTTCTCTTTTCCCCAAGGGTTACTATTTCCGTAAAGCACAACTGATACAAATATGGATTGCTCAAGGATTTGTAGAAAAATCCAGTGAGAAGTTGGAGCATAAAGGATGCAAATATCTAGCTGAGTTGGTGAACTCTGGTTTCTTTCAGCAAGCTGAAAGTTGTTCGTCTTCATCAGAAGTTTTTGTTATGCATGATCTTATGCATGATTTAGCACGAATGGTTTCACAAACAGAATGTGCAACTATAGATGACTCAGAGTGCAGAAAGTTAGCACCGAGTATACGTCATTTGTCAATAGTAACTCATTCTTCATATCGCTGGGATCAAAATGGAAAAATATTTCGTAACGAGGAGTTTGAGAAAAGTTTGCTGAAAGTTACGTCAAGGAATAAGTTGAGGACATTGGTACTTATTGGGCAATATGACCCTCATTTTTTTAAATCCTTCCAAGATGCTTTCAAGGAGGCTCAATATTTGCGACTGCTGCATATCACTGAAAGTTATGATGGTCTTGATTCCTTTCTTTCCAGTTTGGTGAACACTACACATCTCAGGTATCTAAGACTTGAGAGAGTAGGGTCCAACAGAGCTCTGAGCAAGTGTTACCATCTTCAAGTACTAGATATTGGTCCAAATGGATTTCTTGTTATACCTGATGACATAAATAATCTTGTCAGCCTGCGGCATCTTGTTGCACAAAATAAAAATAGAGTGTGCTCTTCCATTGCTAGCATAGGTGAAATGGCCTCACTTCAGAAACTAACAAATTTCAAGGTTGAGAATTCTATTGGCTTTGAAATAACACAACTTCAACGCATGAGTGAGCTTGTAGAACTGCGTGTGTCTCAACTTGAAAATGTTAGAACTAAGCAGGAGGCCAGTGGGGCAAGCCTGAAAGACAAACATCACTTGGAGAGACTACATTTGTTCTGGAAGGGTGTACGGAATGGGTATGACAGTGATGAGAGCTACAATGAATACGACAGTGATTGGAGCTTTGAAAATGAATGCGATGGTAACATGATACCCGAACCTTCTATGCACTCAGAAACAGAAGGGGAGAGACTGCAAATGAGTGATAGCAATGGTGCCCCTATTTTAGATCATATTCCAGACATAGCAAGTGAGGTGCTTGAAGGTCTTGAACCACATTACAACCTCAAATATCTACGGATATCTTGGTACAATGGAGCTAAAGCTCCAACTTGGCTTGCCACTTCACTTACCTATCTGCAAACACTCCGTCTAGAAAATTGTGGAGAATGGCAAAGACTTCCTTTAGAAAGTTTAAGGGTCCTGAAGATTAAAAGGTGCCCTGTTCTGAAGGTCTTCCCGTTGTTTGATAACTGCCATAACTTGGGGTGCTCAAGGTTGCCCCACCTCAGCACGCTCATCATCCATGATTGTCCTGATTTGACTGTGCCTCGTCCTTTCCCCCCTTCAACAATTGTTTCAAAGTTATCCATCAAGGGATTTTTAACACTTCCAACGATGACGACATACGGAGGAACAACATTAGCAATTGGGTCATTTTCTGATAAGCTGACAGTGATGGATAAAACAATGTTGTCGTACCTTAGGTTTGTAACTACTTTGCAGATATCAAATTACCAAAATCTGAGGTATATTTCGTTGAAAGGACTTAGGCAACTCATCCATTTAAAGAGTCTGTCCATATGTTACTGTCCAAATCTTTTCTCTTCAGATGTTCCGCAAGAGCCTACTTTTACCTGTGAAGACATGGTAGCTGGAAATCTCAATGACCACCCATCTCTTGAACTTCTCAGTATTGGAAATTGTGGAATAATGGGGAAGTGA
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| Protein seq | MESIKNLIMRNKSNGITVLPIVGIGGIGKTTLSQCVYNDPEIGNQFEIKIWVHVSHKFDVVRITREILECVSHQSYQGISNFNMLQQDLEKHMKSKKFLIVLDDVWDVTTEECWNKLLGPLRPNHVNTPQEVTGNMIIVTTRIQNFAKRCGTAGSINLKALQDGDIWSLFKAYAFSSNDQHGSNPNLENLGRKIVKELKGNPLAAKTVGSLLQRNLTEDHWISIIENKEWQSLKHTDGIMHVLKFSYDYLPNQLQQSFSYCSLFPKGYYFRKAQLIQIWIAQGFVEKSSEKLEHKGCKYLAELVNSGFFQQAESCSSSSEVFVMHDLMHDLARMVSQTECATIDDSECRKLAPSIRHLSIVTHSSYRWDQNGKIFRNEEFEKSLLKVTSRNKLRTLVLIGQYDPHFFKSFQDAFKEAQYLRLLHITESYDGLDSFLSSLVNTTHLRYLRLERVGSNRALSKCYHLQVLDIGPNGFLVIPDDINNLVSLRHLVAQNKNRVCSSIASIGEMASLQKLTNFKVENSIGFEITQLQRMSELVELRVSQLENVRTKQEASGASLKDKHHLERLHLFWKGVRNGYDSDESYNEYDSDWSFENECDGNMIPEPSMHSETEGERLQMSDSNGAPILDHIPDIASEVLEGLEPHYNLKYLRISWYNGAKAPTWLATSLTYLQTLRLENCGEWQRLPLESLRVLKIKRCPVLKVFPLFDNCHNLGCSRLPHLSTLIIHDCPDLTVPRPFPPSTIVSKLSIKGFLTLPTMTTYGGTTLAIGSFSDKLTVMDKTMLSYLRFVTTLQISNYQNLRYISLKGLRQLIHLKSLSICYCPNLFSSDVPQEPTFTCEDMVAGNLNDHPSLELLSIGNCGIMGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.027418 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0620950 | SBH | 0.579718 | 0.477920 | 1.161857 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53120 | SBH | 1.143008 | 1.394336 | 0.197501 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0620950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006880 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005810 | RBH | 0.243371 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027430 | SBH | 0.803315 | 0.589062 | 0.756611 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0499000 | SBH | 1.749997 | 7.9508665 | 2.0694785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026370 | SBH | 0.000000 | 0.286755 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0502200 | RBH | 0.261116 | 1.325423 | 0.0422675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026730 | SBH | 0.235404 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026600 | SBH | 0.466128 | 0.514007 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026620 | SBH | 3.561647 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027060 | SBH | 0.000000 | 0.355311 | 0.177425 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027290 | SBH | 0.118455 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026470 | SBH | 0.331817 | 0.000000 | 0.035477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026300 | SBH | 0.000000 | 1.734133 | 0.0 |
