Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0027160 | OGI:04092930 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:30370084-30372074 | ||||||||
| Gene Symbol | RGAc | ||||||||||
| DNA seq | ATGTCCTTCTTCAAACACCTCAACTCCCTCCGACACTTGACGCTTTCAAGCTCGCGAAGTTATTGGAGAGTGGTGAGACTGTCAGAGGGGCAAGGGAGAGTGCTTCAGAAGCTCACCCACCTCCAGGAGCTCAGATTCCTCTGCTGCGATGATCTCCTCGTGCTGCCTGAACAGTTGCATTGCCTGTCCTCCCTCAAGAAGTTGGAGATTGGCTACTGTCCGGGTATCTTACGTTTGCCGGAAGAGGGACTCCCTCTTTTATCACTTGAAGAATTGGAAACCAGAGGCTGCACTGAGGAACTAAATAGGCAGTGCAGACTAGCAGCGACAGAAAAGCTAAAGGTCCTAATTGATGGGAAAGTGTGTAGGGTCTGATAGAAGCTTGAAAACCTCGCCTCTCTATTTGTTGTATGCTCCGCAAATGGACCAGTACTGAGCTGCTTATGAGGTACTAGTATAATCTAAAATTTACAATATTCCATAGTTAACTGAAATATTCAGTTTTCTCTTGCTAAAGTAAAACTTATAAGAGTTTTTGTACTGCACTGCAGGCCAAGATGTTATTTATGCAGTTGAGGACCATCATTCGCCTAAAATTCCAGCAAACATTCTTGTGATGAGTTGATGATAGTAGCTTATTGAATCTAATATGATTCCTAGCCGAGGCTCTGTCATTGCTTGTGCAAGCAAGTTTTGTGGCCGCAGTTTACTGCCTTCTGTTCTTCTGCAGCGCTTCATGCTGGGTACTTTTGAAGACTAATACACGCAGTGTAATTTGGTGTGAGTTTGTGTCTGCCCTCTGCAGTGTGGATTTGTCGCTGTTTACTATTGGTAGTATTCTCTGGTTTCATTTGGCTAGTCGCACTCAACCGCTGCTGGACGGCGGACAGGTTAAGCATCAGGGGCTTGCCTCACCCCAGCATGTGTGTCTTATGCGATCAGCACGAAGAAAGCATCAATCACATTTTGGTCGCATGCCCAGAATTAAGGCAGCTCTGGTGGCTACTGCTCTCGGCCATCGGTCGCCCGGAATGCTTGCCTGTCAATGAAATCTCATTCCATTCCTGGTTGTGTGACAAGAGGGAAATCTTCCCGAGCTCTCAACGGCGAGGTTTTGATACCATTGCTACACTCGCAGCATGGACAATTTGGAAGGAACGGAATAACAGGGTGTTCAACCAGAAGCAGAGAAGCTGGACAGAAGTGGCAAGGGCAATGGCGGAAGAGGCAGTGCTGTGGCGGCTCGCCAATACTGCCATGCCGGCCATGCCTTTAGGGCGCTCAGGTCGCAACATTGTGTCGCGAGAATAGGGTTTAATGTTTTTGGGTGACTTCCTGTAATCCCGTCTCCTTATGTTTCTCTCTTTCACCTGTACAGACTTTTACTCCTCTTAATACAAAGATGCGCTCCTTGCGTATTCCCGGAAAAAAAAAAACTTGAATGGAATCGCTACTTCTTGTTCATAGTTCTCACCTCTTTCACTGGCGCATGCAAATCAACAGGCATGCATTAGGAGACGATTCAAGTCAAGAATCTTTAATCTGTGAGTGTAAATGCGTAAATACTGGAGTAGTACATTTCCTTGACCACAAACTCACTGATATAGTACTGTCATTTATCATGCTATTGCATATTCAGTATTCAGATAAATTTTTAAGTCAGTTGATCGTATGGTTGTAACTGAGAAACGATGAGGGGTCTTTTGGCTAGCTCCACAAGATAGTGACATCCATTCTAATTATTATTTGATATTAGGTCATTCTCTAATATTCGTGTTTTTTTATGGTTGTAAATAGTTGGAAGGCTATTCTTCCTCCCCTCTTCAATTGTTACCTCGTGCTAATTAATCGTGAGAAACGCCCAGGGGTCTAGTCAGGTGTTTTTTTTTTTCTTTTTAAGGGTTTTTTAATGAAGTTTTGTAGTATTTCTGTTTTTTCTTTACTCCTTCGAGTTGGATCGCGTCCCTGGATTCTCGAATCCTTCGAGTTAG
More
|
||||||||||
| CDS seq | ATGTCCTTCTTCAAACACCTCAACTCCCTCCGACACTTGACGCTTTCAAGCTCGCGAAGTTATTGGAGAGTGGTGAGACTGTCAGAGGGGCAAGGGAGAGTGCTTCAGAAGCTCACCCACCTCCAGGAGCTCAGATTCCTCTGCTGCGATGATCTCCTCGTGCTGCCTGAACAGTTGCATTGCCTGTCCTCCCTCAAGAAGTTGGAGATTGGCTACTGTCCGGGTATCTTACGTTTGCCGGAAGAGGGACTCCCTCTTTTATCACTTGAAGAATTGGAAACCAGAGGCTGCACTGAGGAACTAAATAGGCAGTGCAGACTAGCAGCGACAGAAAAGCTAAAGGTCCTAATTGATGGGAAATTGGATCGCGTCCCTGGATTCTCGAATCCTTCGAGTTAG |
||||||||||
| Protein seq | MSFFKHLNSLRHLTLSSSRSYWRVVRLSEGQGRVLQKLTHLQELRFLCCDDLLVLPEQLHCLSSLKKLEIGYCPGILRLPEEGLPLLSLEELETRGCTEELNRQCRLAATEKLKVLIDGKLDRVPGFSNPSS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0027160 | OsARC_04g0027160.01 | Chr04 | 30370084 | 30372074 | + | NAM | ||
| CDS seq | ATGTCCTTCTTCAAACACCTCAACTCCCTCCGACACTTGACGCTTTCAAGCTCGCGAAGTTATTGGAGAGTGGTGAGACTGTCAGAGGGGCAAGGGAGAGTGCTTCAGAAGCTCACCCACCTCCAGGAGCTCAGATTCCTCTGCTGCGATGATCTCCTCGTGCTGCCTGAACAGTTGCATTGCCTGTCCTCCCTCAAGAAGTTGGAGATTGGCTACTGTCCGGGTATCTTACGTTTGCCGGAAGAGGGACTCCCTCTTTTATCACTTGAAGAATTGGAAACCAGAGGCTGCACTGAGGAACTAAATAGGCAGTGCAGACTAGCAGCGACAGAAAAGCTAAAGGTCCTAATTGATGGGAAATTGGATCGCGTCCCTGGATTCTCGAATCCTTCGAGTTAG
More
|
|||||||
| Protein seq | MSFFKHLNSLRHLTLSSSRSYWRVVRLSEGQGRVLQKLTHLQELRFLCCDDLLVLPEQLHCLSSLKKLEIGYCPGILRLPEEGLPLLSLEELETRGCTEELNRQCRLAATEKLKVLIDGKLDRVPGFSNPSS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0621500 | RBH | 0.234283 | 0.758905 | 0.758510 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53030 | SBH | 0.183174 | 0.513526 | 0.189823 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0621500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027010 | SBH | 0.0 | 0.0 | 0.467856 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027730 | SBH | 0.032582 | 0.091726 | 0.118973 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027490 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027280 | SBH | 0.147217 | 0.112011 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027430 | SBH | 0.803315 | 0.589062 | 0.756611 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0497400 | SBH | 0.7699455 | 1.2640205 | 1.43007 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026250 | RBH | 0.000000 | 0.066579 | 0.089628 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0501600 | SBH | 0.6534845 | 0.8790395 | 6.51907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026660 | SBH | 0.016158 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026480 | SBH | 0.000000 | 0.535674 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026550 | SBH | 0.000000 | 1.231571 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026990 | RBH | 0.000000 | 0.076545 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027170 | SBH | 0.071858 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026400 | RBH | 0.000000 | 0.429317 | 0.108574 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026260 | SBH | 0.0 | 2.343623 | 0.470135 |
