Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0027490 | OGI:04092930 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:31550708-31552480 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagcaatgttgtagaagtttcaatttgttcactggaggagcttgtgttgattaaaatgccaaagttgaagagatgcttctgcacttcaatcaggaacttgaacgacaatttaagggttctcatgattaagacgtgccctgcactggaggtctttccgttgtttgataactgccagcaatttaaaatcgagcagccatcttggttgttccgtcttagcaagcttgtcatccataaatgtccccatttgcatgtccacaatcctctgccgccttcaactaatgtttcaaaattatccatcaccggagtttcaacgcttccaacggttgagtggtccagaggaatattaagaatcggggttctcgatcattctgatgatccttcggttattgatgagccttctgatcagctgataacgctagacgacaaagtattgtcattccataacctgaggttcctaactgaattggtaatagcaggttgccaaaatctcacgtccatttcattgcaaggtttgaggcaactcatatatttgaggactttggaaatacgcggctgcccaaaacttttctcttccaatatgccaccagagcttgtacgtgagaacatggcagctacatatcacaatgccctcccatctcttgaatatctctttattgctgcctgtggaataacggggaagtggctatctttgatactgcaatatgcgcaggccttacaggacttagatttatatgagtgcgagcagataacagggctatcgataggagaggaagaaagcagtcaaccaaatcttatgtcaactccagaaactttgtcattaggacatcaaggtgactcgccaacaagctcagctcgagatggacttgtgcgcattccgttaaatctcatctcctctctgaagcacatatatattggtgactgccctggtctaacatataatgggaacgatgaaggtttcgctaaactcacctcccttgagagtctacgaattatgaatggcgccaagctactctcgtccttggtgcatggtaatggatacgatgagcggaagaacataaagctcatcccactatcacttgaagtactggagctcagaggttatgatttaccagaagaagtggtgcctgattttctaaggaaccccatccgcctcaaaaaattatctgttatggacactttaagtttaaaatatctacagttgcaatcctgcacggcactcgaagagttggagattgtaaactgtgaatcgcttgccacactagagggtttgcaatccctgcgaagcctcaagaatttgattatatggggatgccccatcttgccacaatggttgcggagttcattagagcaggtccaggagcttttgcctcgactggaaaggctcaagatccaagacgcctctgtccttaccacatctttctgcaagcacctcacctccctccaacgcctaacgcttttcgcttgcaactgggaattggtgagacaaacagatgagcaagacatcgcgcttcagctcctcacatccctgcaagagctctcatttacgtgttgccgcaacctcggagattttcccgttgatctgtacagccttccctcactcaagaggttgaatatctattattgtaaggacatctcgaggctgcctgaaaagggcctcccaccttctctagaagaactggatatcaatgattgcagtgaagagctaaatgaccagtgcagaatgcttccaagcaagctgaaggtcaaaatcaatcagaaatatgtgaattga
More
|
||||||||||
| CDS seq | atgagcaatgttgtagaagtttcaatttgttcactggaggagcttgtgttgattaaaatgccaaagttgaagagatgcttctgcacttcaatcaggaacttgaacgacaatttaagggttctcatgattaagacgtgccctgcactggaggtctttccgttgtttgataactgccagcaatttaaaatcgagcagccatcttggttgttccgtcttagcaagcttgtcatccataaatgtccccatttgcatgtccacaatcctctgccgccttcaactaatgtttcaaaattatccatcaccggagtttcaacgcttccaacggttgagtggtccagaggaatattaagaatcggggttctcgatcattctgatgatccttcggttattgatgagccttctgatcagctgataacgctagacgacaaagtattgtcattccataacctgaggttcctaactgaattggtaatagcaggttgccaaaatctcacgtccatttcattgcaaggtttgaggcaactcatatatttgaggactttggaaatacgcggctgcccaaaacttttctcttccaatatgccaccagagcttgtacgtgagaacatggcagctacatatcacaatgccctcccatctcttgaatatctctttattgctgcctgtggaataacggggaagtggctatctttgatactgcaatatgcgcaggccttacaggacttagatttatatgagtgcgagcagataacagggctatcgataggagaggaagaaagcagtcaaccaaatcttatgtcaactccagaaactttgtcattaggacatcaaggtgactcgccaacaagctcagctcgagatggacttgtgcgcattccgttaaatctcatctcctctctgaagcacatatatattggtgactgccctggtctaacatataatgggaacgatgaaggtttcgctaaactcacctcccttgagagtctacgaattatgaatggcgccaagctactctcgtccttggtgcatggtaatggatacgatgagcggaagaacataaagctcatcccactatcacttgaagtactggagctcagaggttatgatttaccagaagaagtggtgcctgattttctaaggaaccccatccgcctcaaaaaattatctgttatggacactttaagtttaaaatatctacagttgcaatcctgcacggcactcgaagagttggagattgtaaactgtgaatcgcttgccacactagagggtttgcaatccctgcgaagcctcaagaatttgattatatggggatgccccatcttgccacaatggttgcggagttcattagagcaggtccaggagcttttgcctcgactggaaaggctcaagatccaagacgcctctgtccttaccacatctttctgcaagcacctcacctccctccaacgcctaacgcttttcgcttgcaactgggaattggtgagacaaacagatgagcaagacatcgcgcttcagctcctcacatccctgcaagagctctcatttacgtgttgccgcaacctcggagattttcccgttgatctgtacagccttccctcactcaagaggttgaatatctattattgtaaggacatctcgaggctgcctgaaaagggcctcccaccttctctagaagaactggatatcaatgattgcagtgaagagctaaatgaccagtgcagaatgcttccaagcaagctgaaggtcaaaatcaatcagaaatatgtgaattga
More
|
||||||||||
| Protein seq | MSNVVEVSICSLEELVLIKMPKLKRCFCTSIRNLNDNLRVLMIKTCPALEVFPLFDNCQQFKIEQPSWLFRLSKLVIHKCPHLHVHNPLPPSTNVSKLSITGVSTLPTVEWSRGILRIGVLDHSDDPSVIDEPSDQLITLDDKVLSFHNLRFLTELVIAGCQNLTSISLQGLRQLIYLRTLEIRGCPKLFSSNMPPELVRENMAATYHNALPSLEYLFIAACGITGKWLSLILQYAQALQDLDLYECEQITGLSIGEEESSQPNLMSTPETLSLGHQGDSPTSSARDGLVRIPLNLISSLKHIYIGDCPGLTYNGNDEGFAKLTSLESLRIMNGAKLLSSLVHGNGYDERKNIKLIPLSLEVLELRGYDLPEEVVPDFLRNPIRLKKLSVMDTLSLKYLQLQSCTALEELEIVNCESLATLEGLQSLRSLKNLIIWGCPILPQWLRSSLEQVQELLPRLERLKIQDASVLTTSFCKHLTSLQRLTLFACNWELVRQTDEQDIALQLLTSLQELSFTCCRNLGDFPVDLYSLPSLKRLNIYYCKDISRLPEKGLPPSLEELDINDCSEELNDQCRMLPSKLKVKINQKYVN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0027490 | OsCMeo_04g0027490.01 | Chr04 | 31550708 | 31552480 | + | NAM | ||
| CDS seq | atgagcaatgttgtagaagtttcaatttgttcactggaggagcttgtgttgattaaaatgccaaagttgaagagatgcttctgcacttcaatcaggaacttgaacgacaatttaagggttctcatgattaagacgtgccctgcactggaggtctttccgttgtttgataactgccagcaatttaaaatcgagcagccatcttggttgttccgtcttagcaagcttgtcatccataaatgtccccatttgcatgtccacaatcctctgccgccttcaactaatgtttcaaaattatccatcaccggagtttcaacgcttccaacggttgagtggtccagaggaatattaagaatcggggttctcgatcattctgatgatccttcggttattgatgagccttctgatcagctgataacgctagacgacaaagtattgtcattccataacctgaggttcctaactgaattggtaatagcaggttgccaaaatctcacgtccatttcattgcaaggtttgaggcaactcatatatttgaggactttggaaatacgcggctgcccaaaacttttctcttccaatatgccaccagagcttgtacgtgagaacatggcagctacatatcacaatgccctcccatctcttgaatatctctttattgctgcctgtggaataacggggaagtggctatctttgatactgcaatatgcgcaggccttacaggacttagatttatatgagtgcgagcagataacagggctatcgataggagaggaagaaagcagtcaaccaaatcttatgtcaactccagaaactttgtcattaggacatcaaggtgactcgccaacaagctcagctcgagatggacttgtgcgcattccgttaaatctcatctcctctctgaagcacatatatattggtgactgccctggtctaacatataatgggaacgatgaaggtttcgctaaactcacctcccttgagagtctacgaattatgaatggcgccaagctactctcgtccttggtgcatggtaatggatacgatgagcggaagaacataaagctcatcccactatcacttgaagtactggagctcagaggttatgatttaccagaagaagtggtgcctgattttctaaggaaccccatccgcctcaaaaaattatctgttatggacactttaagtttaaaatatctacagttgcaatcctgcacggcactcgaagagttggagattgtaaactgtgaatcgcttgccacactagagggtttgcaatccctgcgaagcctcaagaatttgattatatggggatgccccatcttgccacaatggttgcggagttcattagagcaggtccaggagcttttgcctcgactggaaaggctcaagatccaagacgcctctgtccttaccacatctttctgcaagcacctcacctccctccaacgcctaacgcttttcgcttgcaactgggaattggtgagacaaacagatgagcaagacatcgcgcttcagctcctcacatccctgcaagagctctcatttacgtgttgccgcaacctcggagattttcccgttgatctgtacagccttccctcactcaagaggttgaatatctattattgtaaggacatctcgaggctgcctgaaaagggcctcccaccttctctagaagaactggatatcaatgattgcagtgaagagctaaatgaccagtgcagaatgcttccaagcaagctgaaggtcaaaatcaatcagaaatatgtgaattga
More
|
|||||||
| Protein seq | MSNVVEVSICSLEELVLIKMPKLKRCFCTSIRNLNDNLRVLMIKTCPALEVFPLFDNCQQFKIEQPSWLFRLSKLVIHKCPHLHVHNPLPPSTNVSKLSITGVSTLPTVEWSRGILRIGVLDHSDDPSVIDEPSDQLITLDDKVLSFHNLRFLTELVIAGCQNLTSISLQGLRQLIYLRTLEIRGCPKLFSSNMPPELVRENMAATYHNALPSLEYLFIAACGITGKWLSLILQYAQALQDLDLYECEQITGLSIGEEESSQPNLMSTPETLSLGHQGDSPTSSARDGLVRIPLNLISSLKHIYIGDCPGLTYNGNDEGFAKLTSLESLRIMNGAKLLSSLVHGNGYDERKNIKLIPLSLEVLELRGYDLPEEVVPDFLRNPIRLKKLSVMDTLSLKYLQLQSCTALEELEIVNCESLATLEGLQSLRSLKNLIIWGCPILPQWLRSSLEQVQELLPRLERLKIQDASVLTTSFCKHLTSLQRLTLFACNWELVRQTDEQDIALQLLTSLQELSFTCCRNLGDFPVDLYSLPSLKRLNIYYCKDISRLPEKGLPPSLEELDINDCSEELNDQCRMLPSKLKVKINQKYVN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0626500 | SBH | 1.449855 | 1.839052 | 2.533673 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53040 | RBH | 0.000000 | 0.078972 | 0.144442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0626500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027010 | RBH | 0.0 | 0.0 | 0.467856 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027730 | RBH | 0.032582 | 0.091726 | 0.118973 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027540 | SBH | 0.0 | 0.685567 | 0.152697 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027430 | RBH | 0.803315 | 0.589062 | 0.756611 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0497500 | RBH | 0.03479 | 11.0440005 | 0.078461 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026250 | RBH | 0.000000 | 0.066579 | 0.089628 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0501700 | RBH | 0.0299505 | 4.152743 | 0.129798 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026670 | RBH | 0.0 | 0.220850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026500 | RBH | 0.000000 | 7.015451 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026560 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026990 | RBH | 0.000000 | 0.076545 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027190 | RBH | 0.0 | 1.444748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026410 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026310 | RBH | 0.000000 | 0.000000 | 0.0 |
