Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0007730 | OGI:07002380 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:5663575-5665643 | ||||||||
| Gene Symbol | MSL16, OsMSL16, - | ||||||||||
| DNA seq | CCGTGGCCCTTCGCGCTTCTTCCAGAAAAAAAGAGAGAGAGAGAGAAAGATGGGAACGAGAACACCGAGGACCACATATTAGCAGCCAAGAAAGCCAACTGTGATAGAGATAGACAGCAGCTTGAGCCGGCCGCTGGGGGTGCAAGGCGGAGGCGAGACTCGCCGGCTCAGTCGCGTATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATTGATTTGGTATTTGTCTGCACTTTTGAGCTTTCATACTTGACTTATTATTGACTTATTAGTGCTTCTGTACTTTGGATCTATGGATTAGTGAATTTTTAAGCTGACTACTTGGAACTAGTTTGTTTCATTGGCACTGTAGGTGTAAATCCCTCTCTGATAAGGATTGTGTATTTCTTTTTTCTTTCTTTTTTTTTGGGGGTTAGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGAGACTGCAGAGCGTCAAGAAATAGGTAATATTTGCAAATTCAGTTTCACTTGTTGTTTGCATCAAACCTTTTTTGTTTCATATTGCTGCTGAAACTGAAATTGTTAAATGTTTGTCAAATTTAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTGAGCTTTATATTTTTTTTTATCAGTGGTTTGTTTGTTTTGTTGATATGTTTTAGGCAAGTTATGCTGATCGTGAGGAGAATATAATTGTGCAGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGAGTACTTTTGTGAAACATATGGCATGCAAGTAGTAGGATAGTACTTTTGTGAAATAGATGGCATGCAAATAGAAGGATAGTACTTTTGTGAAACAAAGGGGGTACTTTTGTGAAGCAGATAGTAGTAGGATATACTTTTGCTTAGAGAGAGTGCATGCAAGTAGTTACTTCATTAAGTAGAATGTGACAAACTTGGAGTACAAGACTAGTAATTGACCTTGAATGCCATGGTGGTCAAATGC
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| CDS seq | ATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | MRLPLGTPAQQLAARSNQAQHPSGAQESNAIERLFSDDHDKSTQFVRSTSPATSITGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0007730 | OsARC_03g0007730.01 | Chr03 | 5663575 | 5665643 | + | NAM | ||
| CDS seq | ATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | MRLPLGTPAQQLAARSNQAQHPSGAQESNAIERLFSDDHDKSTQFVRSTSPATSITGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643100 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44130 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027800 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027540 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027600 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015140 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007610 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0093100 | RBH | 0 | 0.0094075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0093400 | RBH | 0 | 0 | 0.018606 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007570 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007620 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027280 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007600 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016500 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
