Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0093400 | OGI:07002380 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:5542195-5543845 | ||||||||
| Gene Symbol | MSL16, OsMSL16, MSL27, OsMSL27 | ||||||||||
| DNA seq | ATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATCGATTTGGTATTTGTCTGCACTTTTGAGCTTTCATACTTGACTTATTATTGACTTATTAGTGCTTCTGTACTTTGGATCTATGGATTAGTGAATTTTTAAGCTGACTACTTGGAACTAGTTTGTTTCATTGGCACTGTAGGTGTAAATCCCTCTCTGATAAGGATTGTGTATTTCTTTTTTCTTTCTTTTTTTTTGGGGGTTAGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGTAATATTTGCAAATTCAGTTTCACTTGTTGTTTACATCAAACCTTTTTTGTTTCATATTGCTGCTGAAACTGAAATTGTTAAATGTTTGTCAAATTTAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTGAGCTTTATATTTTTTTTTATCAGTGGTTTGTTTGTTTTGTTGAAATGTTTTAGGCAAGTTATGCTGATCGTGAGGAGAATATAATTGTGCAGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTTCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGTAGCATTAGAGTGA
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| CDS seq | ATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTTCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGTAGCATTAGAGTGA
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| Protein seq | MRLPLGTPAQQLAARSNQAQHPSGAQVYVDVDSEHGTAERQEIGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFSFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIVALE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0093400 | OsZS97_03T0093400.1 | Chr03 | 5542195 | 5543845 | + | makerRMon | ||
| CDS seq | ATGCGGCTTCCGCTGGGGACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTTCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGTAGCATTAGAGTGA
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| Protein seq | MRLPLGTPAQQLAARSNQAQHPSGAQVYVDVDSEHGTAERQEIGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFSFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIVALE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.018606 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643100 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02500 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0115800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001070 | SBH | 0.0 | 1.469663 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009800 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0014310 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007730 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007610 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0093100 | RBH | 0 | 0.0094075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0034400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
